| Next changeset 1:7d66b50885d1 (2014-02-14) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r 61f9ddecde82 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun Nov 24 13:25:12 2013 -0500 |
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| @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="vcftools" version="0.1.11"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.11.tar.gz</action> + <action type="shell_command">make</action> + <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action> + <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> + <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> + </action> + </actions> + </install> + <readme> + A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project + </readme> + </package> +</tool_dependency> \ No newline at end of file |