Repository 'mothur_screen_seqs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs

Changeset 3:6202ff80199f (2018-03-20)
Previous changeset 2:8743aecd26a9 (2017-09-08) Next changeset 4:7c5eba2f7131 (2018-04-06)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 3418f23b9768f5aafb86488f5ec1cb97530d4fb3
modified:
macros.xml
screen.seqs.xml
added:
test-data/Fasting_Example1.scrap.sff
test-data/amazon.an.0.03.pearson.otu.corr
test-data/amazon.otus.accnos
test-data/esophagus.fn.shared
test-data/samplebiom.biom1
test-data/stool_small.count_table
test-data/stool_small.denovo.vsearch.accnos
test-data/stool_small.names
test-data/stool_small.unique.fasta
test-data/stool_small.vsearch.chimeras
b
diff -r 8743aecd26a9 -r 6202ff80199f macros.xml
--- a/macros.xml Fri Sep 08 14:47:32 2017 -0400
+++ b/macros.xml Tue Mar 20 22:05:32 2018 -0400
[
b'@@ -1,11 +1,13 @@\n <macros>\n+    <token name="@WRAPPER_VERSION@">1.39.5</token>\n     <xml name="requirements">\n         <requirements>\n-            <requirement type="package" version="1.36.1">mothur</requirement>\n+            <requirement type="package" version="@WRAPPER_VERSION@">mothur</requirement>\n+            <yield/>\n         </requirements>\n     </xml>\n     <xml name="version_command">\n-        <version_command>mothur "#help()" | sed \'7q;d\' | cut -d" " -f2 </version_command>\n+        <version_command><![CDATA[ mothur "#help()" | sed \'7q;d\' | cut -d" " -f2 ]]></version_command>\n     </xml>\n     <xml name="stdio">\n         <stdio>\n@@ -13,20 +15,10 @@\n             <exit_code range="1:" level="fatal"/>\n         </stdio>\n     </xml>\n-    <token name="@WRAPPER_VERSION@">1.36.1</token>\n     <token name="@SHELL_OPTIONS@">set -o pipefail;</token>\n-    <token name="@MOTHUR_OVERVIEW@">\n-<![CDATA[\n-\n-**Mothur Overview**\n \n-Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team\n-in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.\n \n-.. _Mothur-Wiki: https://www.mothur.org/wiki/Main_Page\n-\n-]]>\n-    </token>\n+    <!-- Input parameters -->\n     <xml name="labeloptions">\n         <options>\n             <filter type="data_meta" ref="otu" key="labels"/>\n@@ -78,9 +70,70 @@\n         <option value="whittaker">whittaker - Community Membership Similarity the Whittaker similarity coefficient</option>\n         <yield/>\n     </xml>\n+\n+    <!-- CLUSTERING -->\n+    <xml name="param-clustermethods">\n+        <param argument="method" type="select" label="Clustering Method">\n+            <option value="opti" selected="true">Opticlust method</option>\n+            <option value="furthest">Furthest neighbor</option>\n+            <option value="nearest">Nearest neighbor</option>\n+            <option value="average">Average neighbor</option>\n+            <yield/>\n+        </param>\n+    </xml>\n+    <xml name="option-vsearch-clustermethods">\n+        <option value="agc">Abundance-based greedy clustering (agc)(VSEARCH)</option>\n+        <option value="dgc">Distance-based greedy clustering (dgc)(VSEARCH)</option>\n+    </xml>\n+    <xml name="params-opticlust">\n+        <param argument="metric" type="select" label="metric - select the metric in the opticluster method"\n+            help="Options are Matthews correlation coefficient (mcc), sensitivity (sens), specificity (spec), true positives + true negatives (tptn),\n+            false positives + false negatives (fpfn), true positives (tp), true negative (tn), false positive (fp), false negative (fn), f1score (f1score),\n+            accuracy (accuracy), positive predictive value (ppv), negative predictive value (npv), false discovery rate (fdr). Default=mcc.">\n+            <option value="mcc" selected="true">Matthews correlation coefficient (mcc)</option>\n+            <option value="sens">Sensitivity</option>\n+            <option value="spec">specificity</option>\n+            <option value="tptn">true positives + true negatives</option>\n+            <option value="fpfn">false positives + false negatives</option>\n+            <option value="tp">true positives</option>\n+            <option value="tn">true negative</option>\n+            <option value="fp">false positive</option>\n+            <option value="fn">false negative</option>\n+            <option value="f1score">f1score</option>\n+            <option value="accuracy">accuracy</option>\n+            <option value="ppv">positive predictive value</option>\n+            <option value="npv">negative predictive value</option>\n+            <option value="fdr">false discovery rate</option>\n+        </param>\n+        <param argument="initialize" type="select" label="Initial randomization"\n+            help="singleton: each sequence is randomly assigned to its own OTU; oneotu: all sequences are assigned to one'..b'ng expression="^name\\tpound\\tdash\\tplus\\tequal\\tloop\\ttilde\\ttotal\\tnumseqs$"/>\n+    </xml>\n+    <xml name="test-alignreport-format">\n+        <has_line_matching expression="^QueryName\\tQueryLength\\tTemplateName\\tTemplateLength\\tSearchMethod\\tSearchScore\\tAlignmentMethod\\tQueryStart\\tQueryEnd\\tTemplateStart\\tTemplateEnd\\tPairwiseAlignmentLength\\tGapsInQuery\\tGapsInTemplate\\tLongestInsert\\tSimBtwnQuery&amp;Template$"/>\n+    </xml>\n+    <xml name="test-axes-format">\n+        <has_line_matching expression="^group(\\taxis\\d+)+$"/>\n+    </xml>\n+    <xml name="test-chimera-format">\n+        <has_line_matching expression="Score\\tQuery\\tParentA\\tParentB\\tIdQM\\tIdQA\\tIdQB\\tIdAB\\tIdQT\\tLY\\tLN\\tLA\\tRY\\tRN\\tRA\\tDiv\\tYN"/>\n+    </xml>\n+    <xml name="test-column-format">\n+        <has_n_columns n="3"/>\n+        <has_line_matching expression="^[\\w\\d\\-]+\\t[\\w\\d\\-]+\\t[\\d\\.]+$"/>\n+    </xml>\n+    <xml name="test-contigsreport-format">\n+        <has_n_columns n="7"/>\n+        <has_line_matching expression="^Name\\tLength\\tOverlap_Length\\tOverlap_Start\\tOverlap_End\\tMisMatches\\tNum_Ns$"/>\n+    </xml>\n+    <xml name="test-count-format">\n+        <has_line_matching expression="^Representative_Sequence\\ttotal(\\t\\w+)*$"/>\n+        <has_line_matching expression="^\\w+(\\t\\d+)+(\\s)*$"/>\n+    </xml>\n+    <xml name="test-dist-format">\n+        <has_line_matching expression="^[ \\t]*\\d+$"/>\n+        <has_line_matching expression="^[\\w\\d\\-]+(\\t[\\d\\.]+)+\\s?$"/>\n+    </xml>\n+    <xml name="test-fasta-format">\n+        <has_line_matching expression="^>.+$"/>\n+        <has_line_matching expression="^[ACTGN-]+$"/>\n+    </xml>\n+    <xml name="test-fastq-format">\n+        <has_line_matching expression="^@.+$"/>\n+        <has_line_matching expression="^[ACTGN]+$"/>\n+        <has_line_matching expression="^\\+$"/>\n+    </xml>\n+    <xml name="test-group-format">\n+        <has_line_matching expression="^Representative_Sequence\\ttotal(\\t[\\w\\d\\-]+)+$"/>\n+        <has_line_matching expression="^[\\w\\d\\-]+(\\t\\d+)+$"/>\n+    </xml>\n+    <xml name="test-list-format">\n+        <has_line_matching expression="^label\\tnumOtus(\\tOtu\\d+)+$"/>\n+        <has_line_matching expression="^(unique|0\\.\\d+)\\t\\d+(\\t[\\w\\d\\-,]+)+$"/>\n+    </xml>\n+    <xml name="test-names-format">\n+        <has_line_matching expression="^[a-zA-Z0-9]+\\t[a-zA-Z0-9]+$"/>\n+    </xml>\n+    <xml name="test-qfile-format">\n+        <has_line_matching expression="^(\\d+ )+$"/>\n+        <has_line_matching expression="^>.+$"/>\n+    </xml>\n+    <xml name="test-rabund-format">\n+        <has_line_matching expression="^(unique|0\\.\\d+)(\\t\\d+\\.?\\d*)+$"/>\n+    </xml>\n+    <xml name="test-sabund-format">\n+        <has_line_matching expression="^(unique|0\\.\\d+)(\\t\\d+)+$"/>\n+    </xml>\n+    <xml name="test-sensspec-format">\n+        <has_n_columns n="14"/>\n+        <has_line_matching expression="^label\\tcutoff\\ttp\\ttn\\tfp\\tfn\\tsensitivity\\tspecificity\\tppv\\tnpv\\tfdr\\taccuracy\\t\\w+\\tf1score$"/>\n+    </xml>\n+    <xml name="test-shared-format">\n+        <has_line_matching expression="^label\\tGroup\\tnumOtus(\\t(Otu|rareOTUs|.*OTU.*)\\d+)+$"/>\n+    </xml>\n+    <xml name="test-taxonomy-format">\n+        <has_n_columns n="3"/>\n+        <has_line_matching expression="^OTU\\tSize\\tTaxonomy$"/>\n+    </xml>\n+    <xml name="test-taxsummary-format">\n+        <has_line_matching expression="^((taxlevel\\trankID\\ttaxon\\tdaughterlevels\\ttotal(\\t[\\w\\d\\-]+)*)|(taxonomy\\ttotal(\\t[\\w\\d]+)*))$"/>\n+    </xml>\n+    <!-- backmatter -->\n+    <token name="@MOTHUR_OVERVIEW@">\n+<![CDATA[\n+\n+**Mothur Overview**\n+\n+Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team\n+in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.\n+\n+.. _Mothur-Wiki: https://www.mothur.org/wiki/Main_Page\n+\n+]]>\n+    </token>\n     <xml name="citations">\n         <citations>\n             <citation type="doi">10.1128/AEM.01541-09</citation>\n'
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diff -r 8743aecd26a9 -r 6202ff80199f screen.seqs.xml
--- a/screen.seqs.xml Fri Sep 08 14:47:32 2017 -0400
+++ b/screen.seqs.xml Tue Mar 20 22:05:32 2018 -0400
[
b'@@ -7,85 +7,96 @@\n     <expand macro="stdio"/>\n     <expand macro="version_command"/>\n     <command><![CDATA[\n-        @SHELL_OPTIONS@\n+@SHELL_OPTIONS@\n \n-        ## create symlinks to input datasets\n-        ln -s "$fasta_in" fasta_in.dat &&\n-        ln -s "$names_in" names_in.dat &&\n-        ln -s "$groups_in" groups_in.dat &&\n-        ln -s "$qfile_in" qfile_in.dat &&\n-        ln -s "$count_in" count_in.dat &&\n-        ln -s "$alignreport_in" alignreport_in.dat &&\n-        ln -s "$taxonomy_in" taxonomy_in.dat &&\n-        ln -s "$summary" summary.dat &&\n-        ln -s "$contigsreport" contigsreport.dat &&\n+## create symlinks to input datasets\n+ln -s \'$fasta\' fasta.dat &&\n+ln -s \'$names\' names.dat &&\n+ln -s \'$groups\' groups.dat &&\n+ln -s \'$qfile\' qfile.dat &&\n+ln -s \'$count\' count.dat &&\n+ln -s \'$taxonomy\' taxonomy.dat &&\n+ln -s \'$summary\' summary.dat &&\n+#if $contigsrep.usecontigs == "yes":\n+    ln -s \'$contigsrep.contigsreport\' contigsreport.dat &&\n+#end if\n+#if $alignrep.usealign == "yes":\n+    ln -s \'$alignrep.alignreport\' alignreport.dat &&\n+#end if\n \n-        echo \'screen.seqs(\n-            fasta=fasta_in.dat\n-            #if int($start) > -1:\n-                ,start=$start\n-            #end if\n-            #if int($end) > -1:\n-                ,end=$end\n-            #end if\n-            #if int($minlength) > -1:\n-                ,minlength=$minlength\n-            #end if\n-            #if int($maxlength) > -1:\n-                ,maxlength=$maxlength\n-            #end if\n-            #if int($maxambig) > -1:\n-                ,maxambig=$maxambig\n-            #end if\n-            #if int($maxhomop) > -1:\n-                ,maxhomop=$maxhomop\n-            #end if\n-            #if int($criteria) > -1:\n-                ,criteria=$criteria\n-            #end if\n-            #if $optimize:\n-                ,optimize=$optimize\n-            #end if\n-            #if $qfile_in:\n-                ,qfile=qfile_in.dat\n-            #end if\n-            #if $names_in:\n-                ,name=names_in.dat\n-            #end if\n-            #if $groups_in:\n-                ,group=groups_in.dat\n-            #end if\n-            #if $alignreport_in:\n-                ,alignreport=alignreport_in.dat\n-            #end if\n-            #if $taxonomy_in:\n-                ,taxonomy=taxonomy_in.dat\n-            #end if\n-            #if $count_in:\n-                ,count=count_in.dat\n-            #end if\n-            #if $summary:\n-                ,summary=summary.dat\n-            #end if\n-            #if $contigsreport:\n-                ,contigsreport=contigsreport.dat\n-            #end if\n-            ,processors=\'"\\${GALAXY_SLOTS:-8}"\'\n-        )\'\n-        | sed \'s/ //g\'  ## mothur trips over whitespace\n-        | mothur\n-        | tee mothur.out.log\n+echo \'screen.seqs(\n+    fasta=fasta.dat\n+    #if int($start) > -1:\n+        ,start=$start\n+    #end if\n+    #if int($end) > -1:\n+        ,end=$end\n+    #end if\n+    #if int($minlength) > -1:\n+        ,minlength=$minlength\n+    #end if\n+    #if int($maxlength) > -1:\n+        ,maxlength=$maxlength\n+    #end if\n+    #if int($maxambig) > -1:\n+        ,maxambig=$maxambig\n+    #end if\n+    #if int($maxhomop) > -1:\n+        ,maxhomop=$maxhomop\n+    #end if\n+    #if int($criteria) > -1:\n+        ,criteria=$criteria\n+    #end if\n+    #if $optimize:\n+        ,optimize=$optimize\n+    #end if\n+    #if $qfile:\n+        ,qfile=qfile.dat\n+    #end if\n+    #if $names:\n+        ,name=names.dat\n+    #end if\n+    #if $groups:\n+        ,group=groups.dat\n+    #end if\n+    #if $taxonomy:\n+        ,taxonomy=taxonomy.dat\n+    #end if\n+    #if $count:\n+        ,count=count.dat\n+    #end if\n+    #if $summary:\n+        ,summary=summary.dat\n+    #end if\n+    #if $contigsrep.usecontigs == "yes":\n+        ,contigsreport=contigsreport.dat\n+        ,minoverlap=$contigsrep.minoverlap\n+        ,ostart=$contigsrep.ostart\n+        ,oend=$contigsrep.oend\n+        ,mismatches=$contigsrep.mismatches\n+    #end if\n+    #if $alignrep.usealign == '..b'g"/>\n+                    <has_text text="length"/>\n+                </assert_contents>\n+            </output>\n+            <param name="savelog" value="true"/>\n             <expand macro="logfile-test"/>\n         </test>\n-        <test>\n-            <param name="fasta_in" value="amazon.fasta" ftype="mothur.align"/>\n-            <param name="count_in" value="amazon.count_table"/>\n+        <test><!-- test screening with contigsreport -->\n+            <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.fasta" ftype="fasta"/>\n             <param name="maxambig" value="0"/>\n             <param name="maxlength" value="275"/>\n-            <output name="fasta_out" md5="d41d8cd98f00b204e9800998ecf8427e" ftype="mothur.align"/>\n-            <output name="count_out" md5="5f4a08bbf3ec12f954edbcc6b2a2feee" ftype="mothur.count_table"/>\n-            <output name="bad_accnos" md5="66acde5349e34fc97be22032ce68eea5" ftype="mothur.accnos"/>\n+            <param name="usecontigs" value="yes"/>\n+            <param name="contigsreport" value="Mock_S280_L001_R1_001_small.contigs.report"/>\n+            <param name="mismatches" value="18"/>\n+            <output name="fasta_out" file="Mock_S280_L001_R1_001_small.trim.contigs.good.fasta" ftype="fasta"/>\n+            <output name="bad_accnos" ftype="mothur.accnos">\n+                <assert_contents>\n+                    <expand macro="test-accnos-format"/>\n+                    <has_text text="mismatches"/>\n+                    <has_text text="ambig"/>\n+                </assert_contents>\n+            </output>\n+            <output name="contigsreport_out" ftype="tabular">\n+                <assert_contents>\n+                    <expand macro="test-contigsreport-format"/>\n+                    <not_has_text text="M00967_43_000000000-A3JHG_1_1101_22487_4260"/>\n+                    <has_text text="M00967_43_000000000-A3JHG_1_1101_15923_3823"/>\n+                </assert_contents>\n+            </output>\n+            <param name="savelog" value="true"/>\n+            <expand macro="logfile-test"/>\n+        </test>\n+        <test><!-- test screening with alignment report -->\n+            <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.fasta" ftype="fasta"/>\n+            <param name="maxambig" value="0"/>\n+            <param name="maxlength" value="275"/>\n+            <param name="usealign" value="yes"/>\n+            <param name="alignreport" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align.report"/>\n+            <param name="minscore" value="100"/>\n+            <output name="fasta_out" ftype="fasta">\n+                <assert_contents>\n+                    <expand macro="test-fasta-format"/>\n+                    <not_has_text text="M00967_43_000000000-A3JHG_1_1101_14010_4122"/>\n+                    <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>\n+                </assert_contents>\n+            </output>\n+            <output name="bad_accnos" ftype="mothur.accnos">\n+                <assert_contents>\n+                    <expand macro="test-accnos-format"/>\n+                    <has_text text="score"/>\n+                </assert_contents>\n+            </output>\n+            <output name="alignreport_out" ftype="mothur.align.report">\n+                <assert_contents>\n+                    <expand macro="test-alignreport-format"/>\n+                    <not_has_text text="M00967_43_000000000-A3JHG_1_1101_14010_4122"/>\n+                    <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>\n+                </assert_contents>\n+            </output>\n+            <param name="savelog" value="true"/>\n             <expand macro="logfile-test"/>\n         </test>\n     </tests>\n-    <help>\n-<![CDATA[\n+    <help><![CDATA[\n \n @MOTHUR_OVERVIEW@\n \n@@ -156,7 +276,6 @@\n .. _align.report: https://www.mothur.org/wiki/Align.seqs\n .. _screen.seqs: https://www.mothur.org/wiki/Screen.seqs\n \n-]]>\n-    </help>\n+    ]]></help>\n     <expand macro="citations"/>\n </tool>\n'
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diff -r 8743aecd26a9 -r 6202ff80199f test-data/Fasting_Example1.scrap.sff
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Binary file test-data/Fasting_Example1.scrap.sff has changed
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diff -r 8743aecd26a9 -r 6202ff80199f test-data/amazon.an.0.03.pearson.otu.corr
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/amazon.an.0.03.pearson.otu.corr Tue Mar 20 22:05:32 2018 -0400
b
b'@@ -0,0 +1,3829 @@\n+OTUA\tOTUB\tpearsonCoef\tSignificance\n+Otu02\tOtu01\t-1.000000\t0.000000\n+Otu03\tOtu01\t1.000000\t0.000000\n+Otu03\tOtu02\t-1.000000\t0.000000\n+Otu04\tOtu01\t-1.000000\t0.000000\n+Otu04\tOtu02\t1.000000\t0.000000\n+Otu04\tOtu03\t-1.000000\t0.000000\n+Otu05\tOtu01\t-nan\t0.000000\n+Otu05\tOtu02\t-nan\t0.000000\n+Otu05\tOtu03\t-nan\t0.000000\n+Otu05\tOtu04\t-nan\t0.000000\n+Otu06\tOtu01\t1.000000\t0.000000\n+Otu06\tOtu02\t-1.000000\t0.000000\n+Otu06\tOtu03\t1.000000\t0.000000\n+Otu06\tOtu04\t-1.000000\t0.000000\n+Otu06\tOtu05\t-nan\t0.000000\n+Otu07\tOtu01\t1.000000\t0.000000\n+Otu07\tOtu02\t-1.000000\t0.000000\n+Otu07\tOtu03\t1.000000\t0.000000\n+Otu07\tOtu04\t-1.000000\t0.000000\n+Otu07\tOtu05\t-nan\t0.000000\n+Otu07\tOtu06\t1.000000\t0.000000\n+Otu08\tOtu01\t1.000000\t0.000000\n+Otu08\tOtu02\t-1.000000\t0.000000\n+Otu08\tOtu03\t1.000000\t0.000000\n+Otu08\tOtu04\t-1.000000\t0.000000\n+Otu08\tOtu05\t-nan\t0.000000\n+Otu08\tOtu06\t1.000000\t0.000000\n+Otu08\tOtu07\t1.000000\t0.000000\n+Otu09\tOtu01\t1.000000\t0.000000\n+Otu09\tOtu02\t-1.000000\t0.000000\n+Otu09\tOtu03\t1.000000\t0.000000\n+Otu09\tOtu04\t-1.000000\t0.000000\n+Otu09\tOtu05\t-nan\t0.000000\n+Otu09\tOtu06\t1.000000\t0.000000\n+Otu09\tOtu07\t1.000000\t0.000000\n+Otu09\tOtu08\t1.000000\t0.000000\n+Otu10\tOtu01\t1.000000\t0.000000\n+Otu10\tOtu02\t-1.000000\t0.000000\n+Otu10\tOtu03\t1.000000\t0.000000\n+Otu10\tOtu04\t-1.000000\t0.000000\n+Otu10\tOtu05\t-nan\t0.000000\n+Otu10\tOtu06\t1.000000\t0.000000\n+Otu10\tOtu07\t1.000000\t0.000000\n+Otu10\tOtu08\t1.000000\t0.000000\n+Otu10\tOtu09\t1.000000\t0.000000\n+Otu11\tOtu01\t1.000000\t0.000000\n+Otu11\tOtu02\t-1.000000\t0.000000\n+Otu11\tOtu03\t1.000000\t0.000000\n+Otu11\tOtu04\t-1.000000\t0.000000\n+Otu11\tOtu05\t-nan\t0.000000\n+Otu11\tOtu06\t1.000000\t0.000000\n+Otu11\tOtu07\t1.000000\t0.000000\n+Otu11\tOtu08\t1.000000\t0.000000\n+Otu11\tOtu09\t1.000000\t0.000000\n+Otu11\tOtu10\t1.000000\t0.000000\n+Otu12\tOtu01\t1.000000\t0.000000\n+Otu12\tOtu02\t-1.000000\t0.000000\n+Otu12\tOtu03\t1.000000\t0.000000\n+Otu12\tOtu04\t-1.000000\t0.000000\n+Otu12\tOtu05\t-nan\t0.000000\n+Otu12\tOtu06\t1.000000\t0.000000\n+Otu12\tOtu07\t1.000000\t0.000000\n+Otu12\tOtu08\t1.000000\t0.000000\n+Otu12\tOtu09\t1.000000\t0.000000\n+Otu12\tOtu10\t1.000000\t0.000000\n+Otu12\tOtu11\t1.000000\t0.000000\n+Otu13\tOtu01\t1.000000\t0.000000\n+Otu13\tOtu02\t-1.000000\t0.000000\n+Otu13\tOtu03\t1.000000\t0.000000\n+Otu13\tOtu04\t-1.000000\t0.000000\n+Otu13\tOtu05\t-nan\t0.000000\n+Otu13\tOtu06\t1.000000\t0.000000\n+Otu13\tOtu07\t1.000000\t0.000000\n+Otu13\tOtu08\t1.000000\t0.000000\n+Otu13\tOtu09\t1.000000\t0.000000\n+Otu13\tOtu10\t1.000000\t0.000000\n+Otu13\tOtu11\t1.000000\t0.000000\n+Otu13\tOtu12\t1.000000\t0.000000\n+Otu14\tOtu01\t1.000000\t0.000000\n+Otu14\tOtu02\t-1.000000\t0.000000\n+Otu14\tOtu03\t1.000000\t0.000000\n+Otu14\tOtu04\t-1.000000\t0.000000\n+Otu14\tOtu05\t-nan\t0.000000\n+Otu14\tOtu06\t1.000000\t0.000000\n+Otu14\tOtu07\t1.000000\t0.000000\n+Otu14\tOtu08\t1.000000\t0.000000\n+Otu14\tOtu09\t1.000000\t0.000000\n+Otu14\tOtu10\t1.000000\t0.000000\n+Otu14\tOtu11\t1.000000\t0.000000\n+Otu14\tOtu12\t1.000000\t0.000000\n+Otu14\tOtu13\t1.000000\t0.000000\n+Otu15\tOtu01\t1.000000\t0.000000\n+Otu15\tOtu02\t-1.000000\t0.000000\n+Otu15\tOtu03\t1.000000\t0.000000\n+Otu15\tOtu04\t-1.000000\t0.000000\n+Otu15\tOtu05\t-nan\t0.000000\n+Otu15\tOtu06\t1.000000\t0.000000\n+Otu15\tOtu07\t1.000000\t0.000000\n+Otu15\tOtu08\t1.000000\t0.000000\n+Otu15\tOtu09\t1.000000\t0.000000\n+Otu15\tOtu10\t1.000000\t0.000000\n+Otu15\tOtu11\t1.000000\t0.000000\n+Otu15\tOtu12\t1.000000\t0.000000\n+Otu15\tOtu13\t1.000000\t0.000000\n+Otu15\tOtu14\t1.000000\t0.000000\n+Otu16\tOtu01\t1.000000\t0.000000\n+Otu16\tOtu02\t-1.000000\t0.000000\n+Otu16\tOtu03\t1.000000\t0.000000\n+Otu16\tOtu04\t-1.000000\t0.000000\n+Otu16\tOtu05\t-nan\t0.000000\n+Otu16\tOtu06\t1.000000\t0.000000\n+Otu16\tOtu07\t1.000000\t0.000000\n+Otu16\tOtu08\t1.000000\t0.000000\n+Otu16\tOtu09\t1.000000\t0.000000\n+Otu16\tOtu10\t1.000000\t0.000000\n+Otu16\tOtu11\t1.000000\t0.000000\n+Otu16\tOtu12\t1.000000\t0.000000\n+Otu16\tOtu13\t1.000000\t0.000000\n+Otu16\tOtu14\t1.000000\t0.000000\n+Otu16\tOtu15\t1.000000\t0.000000\n+Otu17\tOtu01\t1.000000\t0.000000\n+Otu17\tOtu02\t-1.000000\t0.000000\n+Otu17\tOtu03\t1.000000\t0.000000\n+Otu17\tOtu04\t-1.000000\t0.000000\n+Otu17\tOtu05\t-nan\t0.000000\n+Otu17\tOtu06\t1.000000\t0.000000\n+Otu17\tOtu07\t1.000000\t0.000000\n+Otu17\tOtu08\t1.000000\t0.000000\n+Otu17\tOtu09'..b'tu46\t-1.000000\t0.000000\n+Otu87\tOtu47\t1.000000\t0.000000\n+Otu87\tOtu48\t1.000000\t0.000000\n+Otu87\tOtu49\t1.000000\t0.000000\n+Otu87\tOtu50\t1.000000\t0.000000\n+Otu87\tOtu51\t1.000000\t0.000000\n+Otu87\tOtu52\t1.000000\t0.000000\n+Otu87\tOtu53\t1.000000\t0.000000\n+Otu87\tOtu54\t1.000000\t0.000000\n+Otu87\tOtu55\t1.000000\t0.000000\n+Otu87\tOtu56\t1.000000\t0.000000\n+Otu87\tOtu57\t1.000000\t0.000000\n+Otu87\tOtu58\t1.000000\t0.000000\n+Otu87\tOtu59\t1.000000\t0.00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b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/amazon.otus.accnos
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/amazon.otus.accnos Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,3 @@
+Otu01
+Otu17
+Otu42
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/esophagus.fn.shared
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/esophagus.fn.shared Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,12 @@
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+unique C 593 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+unique D 593 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 30 1 1 8 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
+0.03 B 87 12 17 16 14 1 2 39 1 1 18 8 6 1 1 2 5 1 7 3 1 12 3 6 2 1 1 1 3 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.03 C 87 0 0 19 42 0 0 6 2 10 19 7 1 0 0 2 0 5 0 3 2 0 4 2 0 0 0 1 0 0 0 2 0 2 14 0 0 0 7 0 0 0 0 0 29 14 4 2 2 3 2 11 1 3 3 1 8 6 4 1 1 1 1 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.03 D 87 0 2 3 10 0 2 103 2 0 15 1 0 0 1 5 2 1 5 0 0 1 0 0 0 0 3 6 7 1 1 1 0 1 3 0 0 0 1 0 0 1 0 3 0 0 0 1 0 0 0 0 0 1 0 1 0 4 0 0 0 0 0 0 0 0 2 1 3 2 2 1 3 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1
+0.05 B 74 12 23 34 14 3 47 1 1 8 6 1 1 2 5 1 3 2 12 3 2 1 1 4 1 2 1 1 1 2 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.05 C 74 14 2 38 42 0 12 2 10 7 1 0 0 2 0 5 3 2 3 4 0 0 1 29 0 0 2 0 2 14 0 0 0 7 0 0 0 0 4 2 2 2 11 1 3 3 1 8 4 1 1 1 1 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.05 D 74 0 2 18 10 2 115 2 0 1 3 0 1 5 2 1 0 0 1 0 0 0 6 7 1 1 2 0 1 4 0 0 0 1 0 0 1 3 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 2 1 2 2 1 3 1 1 1 1 1 1 1 1 1 1 3 1 1
+0.10 B 58 50 37 14 52 2 1 8 6 1 1 3 5 1 2 3 2 1 1 2 1 1 1 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.10 C 58 19 41 42 41 2 10 7 1 0 0 2 0 5 13 4 0 0 1 0 6 0 2 14 0 0 7 0 0 4 2 2 2 4 3 1 8 4 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+0.10 D 58 5 18 10 124 2 0 1 3 0 1 9 2 1 0 0 0 0 6 1 2 0 1 4 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 0 2 1 2 2 3 1 1 1 1 1 1 1 1 3 1
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/samplebiom.biom1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samplebiom.biom1 Tue Mar 20 22:05:32 2018 -0400
[
b'@@ -0,0 +1,8668 @@\n+{\n+      "id":"otu.dat-0.03",\n+      "format": "Biological Observation Matrix 0.9.1",\n+      "format_url": "http://biom-format.org",\n+      "type": "OTU table",\n+      "generated_by": "mothur1.36.1",\n+      "date": "Mon Jun 26 15:11:52 2017",\n+      "rows":[\n+            {"id":"Otu00001", "metadata":null},\n+            {"id":"Otu00002", "metadata":null},\n+            {"id":"Otu00003", "metadata":null},\n+            {"id":"Otu00004", "metadata":null},\n+            {"id":"Otu00005", "metadata":null},\n+            {"id":"Otu00006", "metadata":null},\n+            {"id":"Otu00007", "metadata":null},\n+            {"id":"Otu00008", "metadata":null},\n+            {"id":"Otu00009", "metadata":null},\n+            {"id":"Otu00010", "metadata":null},\n+            {"id":"Otu00011", "metadata":null},\n+            {"id":"Otu00012", "metadata":null},\n+            {"id":"Otu00013", "metadata":null},\n+            {"id":"Otu00014", "metadata":null},\n+            {"id":"Otu00015", "metadata":null},\n+            {"id":"Otu00016", "metadata":null},\n+            {"id":"Otu00017", "metadata":null},\n+            {"id":"Otu00018", "metadata":null},\n+            {"id":"Otu00019", "metadata":null},\n+            {"id":"Otu00020", "metadata":null},\n+            {"id":"Otu00021", "metadata":null},\n+            {"id":"Otu00022", "metadata":null},\n+            {"id":"Otu00023", "metadata":null},\n+            {"id":"Otu00024", "metadata":null},\n+            {"id":"Otu00025", "metadata":null},\n+            {"id":"Otu00026", "metadata":null},\n+            {"id":"Otu00027", "metadata":null},\n+            {"id":"Otu00028", "metadata":null},\n+            {"id":"Otu00029", "metadata":null},\n+            {"id":"Otu00030", "metadata":null},\n+            {"id":"Otu00031", "metadata":null},\n+            {"id":"Otu00032", "metadata":null},\n+            {"id":"Otu00033", "metadata":null},\n+            {"id":"Otu00034", "metadata":null},\n+            {"id":"Otu00035", "metadata":null},\n+            {"id":"Otu00036", "metadata":null},\n+            {"id":"Otu00037", "metadata":null},\n+            {"id":"Otu00038", "metadata":null},\n+            {"id":"Otu00039", "metadata":null},\n+            {"id":"Otu00040", "metadata":null},\n+            {"id":"Otu00041", "metadata":null},\n+            {"id":"Otu00042", "metadata":null},\n+            {"id":"Otu00043", "metadata":null},\n+            {"id":"Otu00044", "metadata":null},\n+            {"id":"Otu00045", "metadata":null},\n+            {"id":"Otu00046", "metadata":null},\n+            {"id":"Otu00047", "metadata":null},\n+            {"id":"Otu00048", "metadata":null},\n+            {"id":"Otu00049", "metadata":null},\n+            {"id":"Otu00050", "metadata":null},\n+            {"id":"Otu00051", "metadata":null},\n+            {"id":"Otu00052", "metadata":null},\n+            {"id":"Otu00053", "metadata":null},\n+            {"id":"Otu00054", "metadata":null},\n+            {"id":"Otu00055", "metadata":null},\n+            {"id":"Otu00056", "metadata":null},\n+            {"id":"Otu00057", "metadata":null},\n+            {"id":"Otu00058", "metadata":null},\n+            {"id":"Otu00059", "metadata":null},\n+            {"id":"Otu00060", "metadata":null},\n+            {"id":"Otu00061", "metadata":null},\n+            {"id":"Otu00062", "metadata":null},\n+            {"id":"Otu00063", "metadata":null},\n+            {"id":"Otu00064", "metadata":null},\n+            {"id":"Otu00065", "metadata":null},\n+            {"id":"Otu00066", "metadata":null},\n+            {"id":"Otu00067", "metadata":null},\n+            {"id":"Otu00068", "metadata":null},\n+            {"id":"Otu00069", "metadata":null},\n+            {"id":"Otu00070", "metadata":null},\n+            {"id":"Otu00071", "metadata":null},\n+            {"id":"Otu00072", "metadata":null},\n+            {"id":"Otu00073", "metadata":null},\n+            {"id":"Otu00074", "metadata":null},\n+            {"id":"Otu00075", "metadata":null},\n+            {"id":"Otu00076", "metadata":nul'..b'         [3827,0,1],\n+            [3828,1,1],\n+            [3829,0,1],\n+            [3830,0,1],\n+            [3831,0,1],\n+            [3832,0,1],\n+            [3833,0,1],\n+            [3834,1,1],\n+            [3835,1,1],\n+            [3836,0,1],\n+            [3837,0,1],\n+            [3838,0,1],\n+            [3839,0,1],\n+            [3840,1,1],\n+            [3841,0,1],\n+            [3842,0,1],\n+            [3843,0,1],\n+            [3844,1,1],\n+            [3845,0,1],\n+            [3846,0,1],\n+            [3847,0,1],\n+            [3848,0,1],\n+            [3849,0,1],\n+            [3850,0,1],\n+            [3851,0,1],\n+            [3852,0,1],\n+            [3853,0,1],\n+            [3854,0,1],\n+            [3855,0,1],\n+            [3856,0,1],\n+            [3857,0,1],\n+            [3858,0,1],\n+            [3859,0,1],\n+            [3860,0,1],\n+            [3861,0,1],\n+            [3862,0,1],\n+            [3863,0,1],\n+            [3864,0,1],\n+            [3865,0,1],\n+            [3866,0,1],\n+            [3867,0,1],\n+            [3868,0,1],\n+            [3869,0,1],\n+            [3870,0,1],\n+            [3871,0,1],\n+            [3872,0,1],\n+            [3873,0,1],\n+            [3874,0,1],\n+            [3875,0,1],\n+            [3876,0,1],\n+            [3877,0,1],\n+            [3878,0,1],\n+            [3879,0,1],\n+            [3880,0,1],\n+            [3881,0,1],\n+            [3882,0,1],\n+            [3883,0,1],\n+            [3884,0,1],\n+            [3885,0,1],\n+            [3886,0,1],\n+            [3887,0,1],\n+            [3888,0,1],\n+            [3889,0,1],\n+            [3890,0,1],\n+            [3891,0,1],\n+            [3892,0,1],\n+            [3893,0,1],\n+            [3894,0,1],\n+            [3895,0,1],\n+            [3896,0,1],\n+            [3897,0,1],\n+            [3898,0,1],\n+            [3899,0,1],\n+            [3900,0,1],\n+            [3901,0,1],\n+            [3902,0,1],\n+            [3903,1,1],\n+            [3904,1,1],\n+            [3905,0,1],\n+            [3906,1,1],\n+            [3907,1,1],\n+            [3908,0,1],\n+            [3909,0,1],\n+            [3910,1,1],\n+            [3911,0,1],\n+            [3912,0,1],\n+            [3913,1,1],\n+            [3914,0,1],\n+            [3915,0,1],\n+            [3916,0,1],\n+            [3917,1,1],\n+            [3918,1,1],\n+            [3919,1,1],\n+            [3920,0,1],\n+            [3921,1,1],\n+            [3922,1,1],\n+            [3923,0,1],\n+            [3924,0,1],\n+            [3925,1,1],\n+            [3926,0,1],\n+            [3927,0,1],\n+            [3928,0,1],\n+            [3929,1,1],\n+            [3930,0,1],\n+            [3931,1,1],\n+            [3932,0,1],\n+            [3933,0,1],\n+            [3934,0,1],\n+            [3935,0,1],\n+            [3936,0,1],\n+            [3937,0,1],\n+            [3938,0,1],\n+            [3939,0,1],\n+            [3940,0,1],\n+            [3941,1,1],\n+            [3942,0,1],\n+            [3943,0,1],\n+            [3944,0,1],\n+            [3945,0,1],\n+            [3946,0,1],\n+            [3947,0,1],\n+            [3948,1,1],\n+            [3949,0,1],\n+            [3950,1,1],\n+            [3951,0,1],\n+            [3952,1,1],\n+            [3953,0,1],\n+            [3954,0,1],\n+            [3955,0,1],\n+            [3956,0,1],\n+            [3957,1,1],\n+            [3958,0,1],\n+            [3959,0,1],\n+            [3960,0,1],\n+            [3961,1,1],\n+            [3962,1,1],\n+            [3963,0,1],\n+            [3964,0,1],\n+            [3965,0,1],\n+            [3966,0,1],\n+            [3967,0,1],\n+            [3968,1,1],\n+            [3969,0,1],\n+            [3970,0,1],\n+            [3971,0,1],\n+            [3972,0,1],\n+            [3973,0,1],\n+            [3974,0,1],\n+            [3975,0,1],\n+            [3976,1,1],\n+            [3977,1,1],\n+            [3978,0,1],\n+            [3979,0,1],\n+            [3980,0,1],\n+            [3981,1,1],\n+            [3982,0,1],\n+            [3983,1,1],\n+            [3984,0,1],\n+            [3985,0,1],\n+            [3986,0,1]]\n+}\n'
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/stool_small.count_table
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stool_small.count_table Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,47 @@
+Representative_Sequence total
+F11Fcsw_12747 1
+F11Fcsw_13125 1
+F11Fcsw_13572 2
+F11Fcsw_13584 1
+F11Fcsw_13612 2
+F11Fcsw_13784 2
+F11Fcsw_14513 1
+F11Fcsw_14920 1
+F11Fcsw_14954 1
+F11Fcsw_14980 1
+F11Fcsw_15042 1
+F11Fcsw_15664 1
+F11Fcsw_17394 1
+F11Fcsw_17898 1
+F11Fcsw_18564 1
+F11Fcsw_19115 1
+F11Fcsw_19402 1
+F11Fcsw_19500 1
+F11Fcsw_20028 1
+F11Fcsw_20361 1
+F11Fcsw_20429 1
+F11Fcsw_20462 1
+F11Fcsw_20686 1
+F11Fcsw_21035 1
+F11Fcsw_21196 1
+F11Fcsw_21505 1
+F11Fcsw_21636 1
+F11Fcsw_21645 1
+F11Fcsw_21954 1
+F11Fcsw_22687 1
+F11Fcsw_22831 1
+F11Fcsw_22880 1
+F11Fcsw_22900 1
+F11Fcsw_23043 1
+F11Fcsw_23322 1
+F11Fcsw_23608 1
+F11Fcsw_23684 1
+F11Fcsw_24087 1
+F11Fcsw_24273 1
+F11Fcsw_24701 2
+F11Fcsw_24967 1
+F11Fcsw_25501 1
+F11Fcsw_25574 1
+F11Fcsw_26078 1
+F11Fcsw_26175 1
+F11Fcsw_26418 1
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/stool_small.denovo.vsearch.accnos
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stool_small.denovo.vsearch.accnos Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,2 @@
+F11Fcsw_21505
+F11Fcsw_23322
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/stool_small.names
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stool_small.names Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,46 @@
+F11Fcsw_12747 F11Fcsw_12747
+F11Fcsw_13125 F11Fcsw_13125
+F11Fcsw_13572 F11Fcsw_13572,F11Fcsw_14202
+F11Fcsw_13584 F11Fcsw_13584
+F11Fcsw_13612 F11Fcsw_13612,F11Fcsw_23132
+F11Fcsw_13784 F11Fcsw_13784,F11Fcsw_21715
+F11Fcsw_14513 F11Fcsw_14513
+F11Fcsw_14920 F11Fcsw_14920
+F11Fcsw_14954 F11Fcsw_14954
+F11Fcsw_14980 F11Fcsw_14980
+F11Fcsw_15042 F11Fcsw_15042
+F11Fcsw_15664 F11Fcsw_15664
+F11Fcsw_17394 F11Fcsw_17394
+F11Fcsw_17898 F11Fcsw_17898
+F11Fcsw_18564 F11Fcsw_18564
+F11Fcsw_19115 F11Fcsw_19115
+F11Fcsw_19402 F11Fcsw_19402
+F11Fcsw_19500 F11Fcsw_19500
+F11Fcsw_20028 F11Fcsw_20028
+F11Fcsw_20361 F11Fcsw_20361
+F11Fcsw_20429 F11Fcsw_20429
+F11Fcsw_20462 F11Fcsw_20462
+F11Fcsw_20686 F11Fcsw_20686
+F11Fcsw_21035 F11Fcsw_21035
+F11Fcsw_21196 F11Fcsw_21196
+F11Fcsw_21505 F11Fcsw_21505
+F11Fcsw_21636 F11Fcsw_21636
+F11Fcsw_21645 F11Fcsw_21645
+F11Fcsw_21954 F11Fcsw_21954
+F11Fcsw_22687 F11Fcsw_22687
+F11Fcsw_22831 F11Fcsw_22831
+F11Fcsw_22880 F11Fcsw_22880
+F11Fcsw_22900 F11Fcsw_22900
+F11Fcsw_23043 F11Fcsw_23043
+F11Fcsw_23322 F11Fcsw_23322
+F11Fcsw_23608 F11Fcsw_23608
+F11Fcsw_23684 F11Fcsw_23684
+F11Fcsw_24087 F11Fcsw_24087
+F11Fcsw_24273 F11Fcsw_24273
+F11Fcsw_24701 F11Fcsw_24701,F11Fcsw_24794
+F11Fcsw_24967 F11Fcsw_24967
+F11Fcsw_25501 F11Fcsw_25501
+F11Fcsw_25574 F11Fcsw_25574
+F11Fcsw_26078 F11Fcsw_26078
+F11Fcsw_26175 F11Fcsw_26175
+F11Fcsw_26418 F11Fcsw_26418
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/stool_small.unique.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stool_small.unique.fasta Tue Mar 20 22:05:32 2018 -0400
b
b'@@ -0,0 +1,92 @@\n+>F11Fcsw_12747\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGCAGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATCAGATATGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATCCCAGAGATGCCTCCAAAATACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGAAAGGCAGG\n+>F11Fcsw_13125\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAATGTGGCCGTTCATCCTCTCAGACCGGCTACTGATCGTCGCCTTGGTAGGCCGTTACCCCACCAACTAGCTAATCAGACGCAGACCCATCGTAAAGCGATAGCTTACAAGTAGAGGCCATCTTTAGTCGAGCTTCCATGCGGAAGTTCGACAACATTCGGTATTAGCAGTCCTTTCGAACTGTTGTCCCCATCTTTACGG\n+>F11Fcsw_13572\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACCCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATGGGACGCATCCCCATCCTTTACCAATTAATCTTTATTTGTCGCTCCCATGCGGAAAGACAAACACATCCGGTATTAAACTCCCTTTCAGGAGACTATCCCGGAGTAAAGGGCAGGTTGGATACGCGTTACTCACCCGTGCGCCGGTCGCCATCAAAA\n+>F11Fcsw_13584\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGATGTCTTGGTGGGCCGTTACCCCGCCAACAAACTAATGGAACGCATCCCCATCGGTTATCGAAATTCTTTAATAACAAGAAGATGCCTTCTCGTTATACTATCCGGTATTAATCTTTCTTTCGAAAGGCTATCCCGGAATAACCGGTAGGTTGGATACGTGTTACTCACCCGTGCGCCGGTCGCCATCAACCTA\n+>F11Fcsw_13612\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGTCCGTGTCTCAGTACCAATGTGGGGGACCTTCCTCTCAGAACCCCTACGCATCGTCGCCTTGGTGGGCCGTTACCCCCCAACTAGCTAATGCGCCGCATGCCCATCCCTGTCCGGATTACTCCTTTGGCGCTCGCAGGATGCCCCGCAAACGCTTTATGCGATATTAGACCGGATTTCTCCGGATTATCCCTCTGACAGGGGCAGGTTGCATACGTGTTACTCACCCG\n+>F11Fcsw_13784\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCGGACGCGAGCCCATCTTTCAGCGGATTGCTCCTTTGATCACTGTATCATGCGGTACTGTAATCTTATGCGGTATTAGCATCTGTTTCCAAATGTTATCCCCCTCTGAAAGGCAGGTTG\n+>F11Fcsw_14513\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAATGTGGCCGATCACCCTCTCAGGTCGGCTAACCATCGTCGACTTGGTAGTCCGTTACACTACCAACTATCTAATGGTACGCGAGCCCATCCACATCCGATAAATCTTTTACCCCTGAGAGATGCCTCTCTGTGGTCTTATGCGGTATTAGCACACATTTCTATGTGTTATTCCCCAGATGTGGGCAGGTTG\n+>F11Fcsw_14920\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGTCCATCCTCTCAGACCGGCTACTGATCGTCGCCTTGGTGAGCCATTACCTCTCCAACTAGCTAATCAGACGCGGGCCCATCCTATACCACCTGAGTTTTTCCTACCGTATCATGCGGTACTGTAGGCTTATGCGGTTTTAGCACAGATTTCTCTGTGTTATCCCCTGTATAGGGCAGGTTACCCACGCGTTT\n+>F11Fcsw_14954\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGGCCAACCTCTCAGTCCGGCTACCGATCGTCGACTTGGTGGGCCGTTACCCCGCCAACTATCTAATCGGACGCGAGGCCATCTTTCAGCGATAAATCTTTGGCATGTCCGGGATGCCCCGGTCATGCGTCATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGAAAGGCAGGTTCCTCACGCGTTACT\n+>F11Fcsw_14980\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTTTCTCAGTTCCAATGTGGCCGTTCATCCTCTCAGATCGGCTACCCATCGTCGCCTTGGTGAGCCGTTACCTCTCCAACTAGCTAATGGGCCGCGAGCCCCTCCTATACCGCCTCAGCTTTTACCCCTCTCCGATGCCGGAGTGTGGTCTTATACCGTATTAGCACAAATTTCTCTGTGTTATCCCGTTGTATAGGATAGGTTGCTCACGTGTTACTCACCCG\n+>F11Fcsw_15042\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCGCCCTCTCAGGCCGGCTACTGATCGTCGGTTTGGTGGGCCGTTACCCCGCCAACTGCCTAATCAGACGCGGGCCCATCCCATACCACCGGAGTTTTTCACACTGAGCCATGCAGCTCTGTGCGCTTATGCGGTATTAGCAGCCGTTTCCAGCTGTTATCCCCCGGTATGGGGCAGGTCACCCACGCGTTACT\n+>F11Fcsw_15664\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCACCCTCTCAGGCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACCAGCTAATCAGACGCGGGTCCATCTTGTACCACCGGAGTTTTTCACACTGCTTCATGCGAAGCTGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCAGTACAAGGCAGGTTACCCACGCGTTACT\n+>F11Fcsw_17394\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCACCCTCTCAGGTCGGCTACTGATCGTTGCCTTGGTAGGCCGTTACCCCGCCAACAAGCTAATCAGACGCGGGTCCATCTCACACCACCGGAGTTTTTCACACTGTACCATGCGGTACTGTGCGCTTATGCGGTATTATCAGCCGTTTCCAACTGCTATCCCCCTGTGTGAGGCAGGTTACCCACGCGTTA\n+>F11Fcsw_17898\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCACCCTCTCAGGCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACCAGCTAATCAGACGCGGGTCCATCTTATACCACCGGAGTTTTTCACACTGTATCATGCGATACCGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTATCCCCCTGTATAAGGCAGGTTACCCACGCGTTACTCACCCG\n+>F11Fcsw_18564\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCAACCTCTCA'..b'GCAGCTCTGTGCGCTTATGCGGTATTAGCAGTCATTTCTGACTGTTATCCCCCTGTATAAGGCAGGTTACCCACGCG\n+>F11Fcsw_22900\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCCGATCAGCCTCTCAGCTCGGCTACCCATCGTTGGCTTGGTGGGCCGTTACCCCTCCAACTACCTAATGGGACGCGAACCCCTCTCAAAGCGATAAATCTTTGACCCCTTCATCATGCGGTGTTGTGGTCTCATGCGGTATTAGCAACAGTTTCCCGTTGTTATCCCCCTCTTTGAGTCAGGTTATTCACGCGTTACTCACCCG\n+>F11Fcsw_23043\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGGTCAACCTCTCAGTCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACCAGCTAATCAGACGCGGGTCCATCTTGTACCACCGGAGTTTTTCACACTGCTTCATGCGAAGCTGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCAGTACAAGGCAGGTTACCCACGCGTTA\n+>F11Fcsw_23322\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCAGCCTCTCAGCTCGGCTACCCATCGTCGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGGACGCGAACCCCTCCCAAAGCGATTTTCTTTGACCCCTTCGTCATGCGACATTGTGGTCTTATGCGGTATTAGCACCTGTTTCCAGGTGTTATCCCCCTCTTTGGGTCAGGTTATTCACGTGTTACTCACCCGTGCGCCAA\n+>F11Fcsw_23608\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACTGATCGTAGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATCAGACGCATCCCCATCCATCACCGATAAATCTTTAATCTCTTTCAGATGTCTTCTAGAGATATCATTGGGTATTAGTCTTACTTTGCAAGGTTATCCCAAGTGATGGGCAGGTTGGATACGCGTTACTCACCCG\n+>F11Fcsw_23684\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACTGATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATCAGACGCATCCCCATCCATCACCGATAAATCTTTAATCCCTTTCAGATGTCTTCTAGAGACGTCATTGGGTATTAGTCTTACTTTCGCAAGGTTATCCCAAGTGATGGGCAGGTTGGATACGCGTTACTCACCCGTGCG\n+>F11Fcsw_24087\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCACCCTCTCAGGCCGGCTATGGATCGTCGCCTTGGTGGGCCGTTACCTCACCAACAAGCTAATCCAACGCGGGTCCATCTTATACCACCGGAGTTTTTCACACTGAGCCATGCAGCTCTGTGCGCTTATGCGGTATTAGCAGCCATTTCTGACTGTTATCCCCCTGTATAAGGCAGGTTACCCACG\n+>F11Fcsw_24273\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTAGGCCGTTACCCCACCAACTATCTAATCAGACGCGAGCCCATCTATCAGCGGATTACTCCTTTCCCACTTTCATCATGTGATATTTATTGGCATATGCGGTATTAGCAATGATTTCTCACTGTTATTCCCCTCCTGATAGGCG\n+>F11Fcsw_24701\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCCGATCAGCCTCTCAGCTCGGCTACCCATCGTCGGCTAGGTGGGCTGTTACCCCGCCTACTACCTAATGGGACGCGAACCCCTCCCAAAGCGATTTTCTTTGACCCCTTCGTCATGCGACATTGTGGTCTTATGCGGTATTAGCACCTGTTTCCAGGTGTTATCCCCCTCTTTGGGTCAGGTTATTCACGTGTTACTCACCCGTGCG\n+>F11Fcsw_24967\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGAAGACTAGGTGGGCCGTTACCCCGCCTACTATCTAATGGAACGCATCCCCATCGTCTACCGGAATACCTTTAATCATGTGAACATGCGGACTCATGATGCCATCTTGTATTAATCTTCCTTTCAGAAGGCTGTCCAAGAGTAGACGGCAGGTTGGATACGTGTTACT\n+>F11Fcsw_25501\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCAACCTCTCAGTCCGGCTACTGATCGTCGACTTGGTGGGCCGTTACCCCGCCAACTATCTAATCAGACGCGAGGCCATCTTTCAGCGATAAATCTTTGGCATTTCGACCATGCGATCAAAATGCGTCATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGAAAGGCAGGTTCCTCACG\n+>F11Fcsw_25574\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCACCCTCTCAGGTCGGCTACCGATCGTCGGCTTGGTGGGCCGTTACCTCACCAACTACCTAATCGGACGCGAGCCCACCCCAAACCGATAAATCTTTTACCTCAGAACCATGTGATCCCGTGGTCTTATGCGGTATTAGTACACCTTTCGGTGTGTTATTCCCCTGTCTGGAAAAGGTTGCTCACGCGTTACTCACCCGTCCGCCGCTAAAACAG\n+>F11Fcsw_26078\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCCGATCAGCCTCTCAGCTCGGCTACCCATCGTCGGCTAGGTGGGCTGTTATCCCGCCTACTACCTAATGGGACGCGAACCCCTCCCAAAGCGATTTTCTTTGACCCCTTCGTCATGCGACATTGTGGTCTTATGCGGTATTAGCACCTGTTTCCAGGTGTTATCCCCCCTCTTTGGGTCAGGTTATTCACGTGTTACTCA\n+>F11Fcsw_26175\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCACCCTCTCAGGTCGGCTACCGATCGTCGGCTTGGTGGGCCGTTACCTCACCAACTACCTAATCGGACGCGAGCCCACCCCAAACCGATAAATCTTTTACCCCAGAACCATGTGATCCCGTGGTCTTATGCGGTATTAGTACACCTTTCGGTGTGTTATTCCCCTGTCTGGGAAAGGTTGCTCACGCGTTACTCACCCGTCCGCCGCTAAAACAG\n+>F11Fcsw_26418\n+AGAGAGCAAGTGCATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGGTCACCCTCTCAGGTCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACCAGCTAATCAGACGCGGGTCCATCCTGTACCACCGGAGTTTTTCACACTGCTTCATGCGAAGCTGTGCGCTTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTGTACAGGGCAGGTTACCCACGCGTTACT\n'
b
diff -r 8743aecd26a9 -r 6202ff80199f test-data/stool_small.vsearch.chimeras
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stool_small.vsearch.chimeras Tue Mar 20 22:05:32 2018 -0400
b
@@ -0,0 +1,47 @@
+Score Query ParentA ParentB IdQM IdQA IdQB IdAB IdQT LY LN LA RY RN RA Div YN
+0.0000 F11Fcsw_13572;size=2; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_13612;size=2; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_13784;size=2; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_24701;size=2; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_12747;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0514 F11Fcsw_13125;size=1; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; F11Fcsw_13784;size=2; 80.5 77.1 80.1 72.7 80.1 21 20 19 8 0 6 0.4 N
+0.1560 F11Fcsw_13584;size=1; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; 82.5 80.4 72.9 73.3 80.4 23 0 8 15 10 24 2.1 N
+0.0259 F11Fcsw_14513;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 82.7 79.3 81.4 81.9 81.4 11 8 11 11 3 19 1.3 N
+0.0550 F11Fcsw_14920;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_13784;size=2; 84.7 83.5 76.3 80.9 83.5 23 3 21 5 2 10 1.3 N
+0.0000 F11Fcsw_14954;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0216 F11Fcsw_14980;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 82.0 79.1 80.8 82.4 80.8 7 4 6 12 5 28 1.3 N
+0.0400 F11Fcsw_15042;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_13784;size=2; 84.6 82.9 79.1 79.9 82.9 21 8 18 5 1 9 1.7 N
+0.0524 F11Fcsw_15664;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 84.6 83.8 71.7 72.9 83.8 41 10 25 3 1 1 0.8 N
+0.0000 F11Fcsw_17394;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0428 F11Fcsw_17898;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 86.7 86.2 71.7 72.5 86.2 45 9 21 2 1 1 0.4 N
+0.0000 F11Fcsw_18564;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_19115;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_19402;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_19500;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0158 F11Fcsw_20028;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 77.8 77.4 70.4 73.0 77.4 32 15 35 1 0 1 0.4 N
+0.0161 F11Fcsw_20361;size=1; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; F11Fcsw_13784;size=2; 77.5 71.4 77.1 73.1 77.1 2 1 3 28 14 33 0.4 N
+0.1919 F11Fcsw_20429;size=1; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; 84.6 82.1 75.4 73.3 82.1 22 0 5 16 10 22 2.5 N
+0.0158 F11Fcsw_20462;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 77.8 77.4 70.4 73.0 77.4 32 15 35 1 0 1 0.4 N
+0.0000 F11Fcsw_20686;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0422 F11Fcsw_21035;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_13784;size=2; 86.3 84.6 81.3 82.2 84.6 16 4 4 8 4 21 1.7 N
+0.0000 F11Fcsw_21196;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.5878 F11Fcsw_21505;size=1; F11Fcsw_13572;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 92.4 76.7 88.2 72.1 88.2 11 0 0 48 7 13 4.2 Y
+0.0000 F11Fcsw_21636;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_21645;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_21954;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_22687;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_22831;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0322 F11Fcsw_22880;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 83.3 82.9 70.8 72.5 82.9 41 11 27 2 1 1 0.4 N
+0.0000 F11Fcsw_22900;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_23043;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.5123 F11Fcsw_23322;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 99.2 83.0 97.9 81.7 97.9 3 0 1 40 1 0 1.2 Y
+0.0000 F11Fcsw_23608;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_23684;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0324 F11Fcsw_24087;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 83.8 83.3 71.2 72.5 83.3 41 11 26 2 1 1 0.4 N
+0.0000 F11Fcsw_24273;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_24967;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0000 F11Fcsw_25501;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0461 F11Fcsw_25574;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 84.9 80.8 82.0 82.4 82.0 12 5 3 14 4 24 2.9 N
+0.0000 F11Fcsw_26078;size=1; * * * * * * * * 0 0 0 0 0 0 * N
+0.0509 F11Fcsw_26175;size=1; F11Fcsw_13784;size=2; F11Fcsw_24701;size=2; F11Fcsw_24701;size=2; 85.8 81.2 82.8 82.4 82.8 12 5 3 15 4 22 2.9 N
+0.0696 F11Fcsw_26418;size=1; F11Fcsw_13784;size=2; F11Fcsw_13572;size=2; F11Fcsw_13784;size=2; 83.3 82.1 72.5 72.9 82.1 38 12 27 3 0 1 1.2 N