Galaxy |

Changeset 2:6253ca844c62 (2023-06-08)

Previous changeset 1:2f4d65c8cfc0 (2023-01-13) Next changeset 3:54f24a4e861d (2024-04-25)

Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal commit 65e4952f33eb335528e8553150e9097e5ea8f556

modified:
qiime2__longitudinal__linear_mixed_effects.xml

added:
test-data/volatility.test0.metadata.tsv

removed:
test-data/.gitkeep

diff -r 2f4d65c8cfc0 -r 6253ca844c62 qiime2__longitudinal__linear_mixed_effects.xml
--- a/qiime2__longitudinal__linear_mixed_effects.xml Fri Jan 13 22:57:36 2023 +0000
+++ b/qiime2__longitudinal__linear_mixed_effects.xml Thu Jun 08 19:49:13 2023 +0000

@@ -6,14 +6,14 @@
-->

-<tool name="qiime2 longitudinal linear-mixed-effects" id="qiime2__longitudinal__linear_mixed_effects" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 longitudinal linear-mixed-effects" id="qiime2__longitudinal__linear_mixed_effects" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
     <description>Linear mixed effects modeling</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.11</container>
+        <container type="docker">quay.io/qiime2/core:2023.5</container>
     </requirements>
     <version_command>q2galaxy version longitudinal</version_command>
     <command detect_errors="exit_code">q2galaxy run longitudinal linear_mixed_effects '$inputs'</command>

diff -r 2f4d65c8cfc0 -r 6253ca844c62 test-data/volatility.test0.metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/volatility.test0.metadata.tsv Thu Jun 08 19:49:13 2023 +0000

b'@@ -0,0 +1,877 @@\n+sample-id\tanti-exposed-all\tday-of-life\tdelivery\tdiet\tdiet-3\tmom-or-child\tmonth\tmonth-of-life\tsex\tstudyid\r\n+#q2:types\tcategorical\tnumeric\tcategorical\tcategorical\tcategorical\tcategorical\tnumeric\tnumeric\tcategorical\tcategorical\r\n+10249.C001.01SS\tn\t0\tVaginal\tbd\teb\tC\t0\t0\tFemale\t1\r\n+10249.C001.02SS\tn\t36\tVaginal\tbd\teb\tC\t\t1.2\tFemale\t1\r\n+10249.C001.03SS\tn\t42\tVaginal\tbd\teb\tC\t\t1.4\tFemale\t1\r\n+10249.C001.04SS\ty\t49\tVaginal\tbd\teb\tC\t\t1.6\tFemale\t1\r\n+10249.C001.05SS\ty\t57\tVaginal\tbd\teb\tC\t\t1.9\tFemale\t1\r\n+10249.C001.06SS\ty\t61\tVaginal\tbd\teb\tC\t\t2\tFemale\t1\r\n+10249.C001.07SS\ty\t92\tVaginal\tbd\teb\tC\t\t3\tFemale\t1\r\n+10249.C001.08SS\ty\t122\tVaginal\tbd\teb\tC\t\t4\tFemale\t1\r\n+10249.C001.09SS\ty\t153\tVaginal\tbd\teb\tC\t\t5\tFemale\t1\r\n+10249.C001.10SS\ty\t183\tVaginal\tbd\teb\tC\t\t6\tFemale\t1\r\n+10249.C001.11SS\ty\t214\tVaginal\tbd\teb\tC\t\t7\tFemale\t1\r\n+10249.C001.12SS\ty\t244\tVaginal\tbd\teb\tC\t\t8\tFemale\t1\r\n+10249.C001.13SS\ty\t273\tVaginal\tbd\teb\tC\t\t9\tFemale\t1\r\n+10249.C001.14SS\ty\t294\tVaginal\tbd\teb\tC\t\t9.7\tFemale\t1\r\n+10249.C001.15SS\ty\t300\tVaginal\tbd\teb\tC\t\t9.9\tFemale\t1\r\n+10249.C001.16SS\ty\t307\tVaginal\tbd\teb\tC\t\t10.1\tFemale\t1\r\n+10249.C001.17SS\ty\t337\tVaginal\tbd\teb\tC\t\t11.1\tFemale\t1\r\n+10249.C001.18SS\ty\t367\tVaginal\tbd\teb\tC\t\t12.1\tFemale\t1\r\n+10249.C001.19SS\ty\t375\tVaginal\tbd\teb\tC\t\t12.3\tFemale\t1\r\n+10249.C001.20SS\ty\t378\tVaginal\tbd\teb\tC\t\t12.4\tFemale\t1\r\n+10249.C001.25SS\ty\t411\tVaginal\tbd\teb\tC\t\t13.5\tFemale\t1\r\n+10249.C001.26SS\ty\t427\tVaginal\tbd\teb\tC\t\t14\tFemale\t1\r\n+10249.C001.27SS\ty\t435\tVaginal\tbd\teb\tC\t\t14.3\tFemale\t1\r\n+10249.C001.29SS\ty\t488\tVaginal\tbd\teb\tC\t\t16\tFemale\t1\r\n+10249.C001.30SS\ty\t551\tVaginal\tbd\teb\tC\t\t18.1\tFemale\t1\r\n+10249.C001.31SS\ty\t613\tVaginal\tbd\teb\tC\t\t20.2\tFemale\t1\r\n+10249.C001.32SS\ty\t677\tVaginal\tbd\teb\tC\t22\t22.3\tFemale\t1\r\n+10249.C001.34SD\ty\t733\tVaginal\tbd\teb\tC\t24\t24.1\tFemale\t1\r\n+10249.C001.34SS\ty\t733\tVaginal\tbd\teb\tC\t24\t24.1\tFemale\t1\r\n+10249.C001.35SS\ty\t792\tVaginal\tbd\teb\tC\t26\t26\tFemale\t1\r\n+10249.C001.36SD\ty\t855\tVaginal\tbd\teb\tC\t28\t28.1\tFemale\t1\r\n+10249.C001.36SS\ty\t855\tVaginal\tbd\teb\tC\t28\t28.1\tFemale\t1\r\n+10249.C002.01SS\tn\t0\tCesarean\tbd\teb\tC\t0\t0\tMale\t2\r\n+10249.C002.01SS.r\tn\t0\tCesarean\tbd\teb\tC\t0\t0\tMale\t2\r\n+10249.C002.02SS\tn\t32\tCesarean\tbd\teb\tC\t1\t1.1\tMale\t2\r\n+10249.C002.03SS\tn\t53\tCesarean\tbd\teb\tC\t2\t1.7\tMale\t2\r\n+10249.C002.04SS\tn\t60\tCesarean\tbd\teb\tC\t2\t2\tMale\t2\r\n+10249.C002.05SS\tn\t89\tCesarean\tbd\teb\tC\t3\t2.9\tMale\t2\r\n+10249.C002.06SS\tn\t123\tCesarean\tbd\teb\tC\t4\t4\tMale\t2\r\n+10249.C002.07SS\tn\t158\tCesarean\tbd\teb\tC\t5\t5.2\tMale\t2\r\n+10249.C002.08SS\tn\t190\tCesarean\tbd\teb\tC\t6\t6.2\tMale\t2\r\n+10249.C002.09SS\tn\t249\tCesarean\tbd\teb\tC\t8\t8.2\tMale\t2\r\n+10249.C002.10SS\tn\t284\tCesarean\tbd\teb\tC\t9\t9.3\tMale\t2\r\n+10249.C002.11SS\tn\t315\tCesarean\tbd\teb\tC\t10\t10.4\tMale\t2\r\n+10249.C002.12SS\tn\t338\tCesarean\tbd\teb\tC\t11\t11.1\tMale\t2\r\n+10249.C002.13SS\tn\t369\tCesarean\tbd\teb\tC\t12\t12.1\tMale\t2\r\n+10249.C002.15SS\tn\t488\tCesarean\tbd\teb\tC\t16\t16\tMale\t2\r\n+10249.C002.16SS\tn\t555\tCesarean\tbd\teb\tC\t18\t18.2\tMale\t2\r\n+10249.C002.18SS\tn\t678\tCesarean\tbd\teb\tC\t22\t22.3\tMale\t2\r\n+10249.C002.19SD\tn\t731\tCesarean\tbd\teb\tC\t24\t24\tMale\t2\r\n+10249.C002.19SS\tn\t731\tCesarean\tbd\teb\tC\t24\t24\tMale\t2\r\n+10249.C002.20SS\tn\t798\tCesarean\tbd\teb\tC\t26\t26.2\tMale\t2\r\n+10249.C002.21SD\tn\t856\tCesarean\tbd\teb\tC\t28\t28.1\tMale\t2\r\n+10249.C002.21SS\tn\t856\tCesarean\tbd\teb\tC\t28\t28.1\tMale\t2\r\n+10249.C004.01SS\tn\t0\tCesarean\tbd\teb\tC\t0\t0\tMale\t4\r\n+10249.C004.02SS\tn\t31\tCesarean\tbd\teb\tC\t1\t1\tMale\t4\r\n+10249.C004.03SS\tn\t55\tCesarean\tbd\teb\tC\t2\t1.8\tMale\t4\r\n+10249.C004.04SS\tn\t91\tCesarean\tbd\teb\tC\t3\t3\tMale\t4\r\n+10249.C004.05SS\tn\t124\tCesarean\tbd\teb\tC\t4\t4.1\tMale\t4\r\n+10249.C004.06SS\tn\t154\tCesarean\tbd\teb\tC\t5\t5.1\tMale\t4\r\n+10249.C004.07SS\tn\t186\tCesarean\tbd\teb\tC\t6\t6.1\tMale\t4\r\n+10249.C004.08SS\tn\t214\tCesarean\tbd\teb\tC\t7\t7\tMale\t4\r\n+10249.C004.09SS\ty\t245\tCesarean\tbd\teb\tC\t8\t8.1\tMale\t4\r\n+10249.C004.10SS\ty\t257\tCesarean\tbd\teb\tC\t8\t8.4\tMale\t4\r\n+10249.C004.11SS\ty\t266\tCesarean\tbd\teb\tC\t9\t8.7\tMale\t4\r\n+10249.C004.12SS\ty\t278\tCesarean\tbd\teb\tC\t9\t9.1\tMale\t4\r\n+10249.C004.13SS\ty\t308\tCesarean\tbd\teb\tC\t10\t10.1\tMale\t4\r\n+10249.C004.14SS\ty\t340\tCesarean\tbd\teb\tC\t11\t11.2\tMale\t4\r\n+10249.C004.15SS\ty\t366\tCesarean\tbd\teb\tC\t12\t12\tMale\t4\r\n+10249.C005.01SS\tn\t1\tCesarean\tfd\tfd\tC'..b'249.C049.02SS\tn\t5\tVaginal\tbd\tbd\tC\t0\t0.2\tMale\t49\r\n+10249.C049.03SD\tn\t32\tVaginal\tbd\tbd\tC\t1\t1.1\tMale\t49\r\n+10249.C049.03SS\tn\t32\tV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