Repository 'umi_tools_extract'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract

Changeset 6:6417d5ed05c6 (2018-06-21)
Previous changeset 5:f77bc14eba31 (2018-06-05) Next changeset 7:4756f7765416 (2018-07-14)
Commit message:
planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
added:
test-data/chr19_gene_tags.bam
test-data/count_single_cells_gene_tag.tsv
test-data/count_single_cells_gene_tag_wide.tsv
test-data/count_single_gene_tag.tsv
b
diff -r f77bc14eba31 -r 6417d5ed05c6 test-data/chr19_gene_tags.bam
b
Binary file test-data/chr19_gene_tags.bam has changed
b
diff -r f77bc14eba31 -r 6417d5ed05c6 test-data/count_single_cells_gene_tag.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag.tsv Thu Jun 21 15:20:02 2018 -0400
b
@@ -0,0 +1,23 @@
+gene cell count
+ENSG00000011304.18 ACAAGG 33
+ENSG00000011304.18 TTCACG 24
+ENSG00000065268.10 ACAAGG 4
+ENSG00000065268.10 TTCACG 11
+ENSG00000070404.9 TTCACG 1
+ENSG00000070423.17 ACAAGG 2
+ENSG00000070423.17 TTCACG 4
+ENSG00000099804.8 ACAAGG 5
+ENSG00000099804.8 TTCACG 4
+ENSG00000099821.13 ACAAGG 6
+ENSG00000099821.13 TTCACG 1
+ENSG00000099864.17 TTCACG 2
+ENSG00000105556.11 ACAAGG 2
+ENSG00000105556.11 TTCACG 3
+ENSG00000116017.10 ACAAGG 7
+ENSG00000116017.10 TTCACG 18
+ENSG00000172270.18 ACAAGG 9
+ENSG00000172270.18 TTCACG 3
+ENSG00000175221.14 ACAAGG 1
+ENSG00000175221.14 TTCACG 3
+ENSG00000198858.9 ACAAGG 1
+ENSG00000267751.5 TTCACG 1
b
diff -r f77bc14eba31 -r 6417d5ed05c6 test-data/count_single_cells_gene_tag_wide.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag_wide.tsv Thu Jun 21 15:20:02 2018 -0400
b
@@ -0,0 +1,14 @@
+gene ACAAGG TTCACG
+ENSG00000011304.18 33 24
+ENSG00000065268.10 4 11
+ENSG00000070404.9 0 1
+ENSG00000070423.17 2 4
+ENSG00000099804.8 5 4
+ENSG00000099821.13 6 1
+ENSG00000099864.17 0 2
+ENSG00000105556.11 2 3
+ENSG00000116017.10 7 18
+ENSG00000172270.18 9 3
+ENSG00000175221.14 1 3
+ENSG00000198858.9 1 0
+ENSG00000267751.5 0 1
b
diff -r f77bc14eba31 -r 6417d5ed05c6 test-data/count_single_gene_tag.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_gene_tag.tsv Thu Jun 21 15:20:02 2018 -0400
b
@@ -0,0 +1,14 @@
+gene count
+ENSG00000011304.18 54
+ENSG00000065268.10 15
+ENSG00000070404.9 1
+ENSG00000070423.17 6
+ENSG00000099804.8 9
+ENSG00000099821.13 7
+ENSG00000099864.17 2
+ENSG00000105556.11 5
+ENSG00000116017.10 24
+ENSG00000172270.18 12
+ENSG00000175221.14 4
+ENSG00000198858.9 1
+ENSG00000267751.5 1