| Previous changeset 0:5f95950c3959 (2020-04-03) Next changeset 2:0cb98597934b (2020-04-28) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed" |
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modified:
scmap_get_std_output.xml scmap_macros.xml |
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| diff -r 5f95950c3959 -r 656c588b718c scmap_get_std_output.xml --- a/scmap_get_std_output.xml Fri Apr 03 06:33:57 2020 -0400 +++ b/scmap_get_std_output.xml Fri Apr 24 11:24:13 2020 -0400 |
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| @@ -5,11 +5,16 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scmap_get_std_output.R --predictions-file "${input_predictions_file}" --output-table "${output_predictions_file}" --include-scores "${include_scores}" --sim-col-name "${sim_col_name}" + scmap_get_std_output.R --predictions-file "${input_predictions_file}" --output-table "${output_predictions_file}" --include-scores "${include_scores}" --index '${index}' --tool '${tool}' --sim-col-name "${sim_col_name}" ]]></command> <inputs> <param type="data" name="input_predictions_file" label="Scmap predictions file in text format" format="txt" help="Path to the predictions file in text format" /> <param type="boolean" name="include_scores" checked="false" label="Should prediction scores be included?" help="Boolean indicating whether similarity scores should be included in the final output" /> + <param type="data" name="index" label="Scmap index object" format="rdata" help="Scmap index object in rdata format" /> + <param type="select" name="tool" label="Tool used (cell/cluster)" help="What tool was used - scmap-cell or scmap-cluster?"> + <option value="scmap-cell">Scmap-cell</option> + <option value="scmap-cluster">Scmap-cluster</option> + </param> <param type="text" name="sim_col_name" value="scmap_cluster_siml" label="Column name of similarity scores" help="Name of column that contains distances between clusters/cells" /> </inputs> <outputs> |
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| diff -r 5f95950c3959 -r 656c588b718c scmap_macros.xml --- a/scmap_macros.xml Fri Apr 03 06:33:57 2020 -0400 +++ b/scmap_macros.xml Fri Apr 24 11:24:13 2020 -0400 |
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| @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scmap-cli</requirement> + <requirement type="package" version="0.0.8">scmap-cli</requirement> <yield/> </requirements> </xml> @@ -38,6 +38,7 @@ url = {https://github.com/ebi-gene-expression-group/scmap-cli.git}, } </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> <yield /> </citations> </xml> |