| Previous changeset 10:becf7fd6d908 (2016-04-19) Next changeset 12:577611df296d (2016-04-25) |
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Commit message:
Uploaded |
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modified:
CRAPomeQuery.xml |
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| diff -r becf7fd6d908 -r 659644782ecd CRAPomeQuery.xml --- a/CRAPomeQuery.xml Tue Apr 19 11:16:44 2016 -0400 +++ b/CRAPomeQuery.xml Tue Apr 19 11:19:32 2016 -0400 |
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| @@ -15,6 +15,10 @@ <data format="txt" name="CrapomeFile" label="CRAPome File"/> </outputs> <stdio> + <regex match="TypeError" + source="stderr" + level="fatal" + description="Error: Check input file."/> <regex match="Error|error" source="stdout" level="fatal" @@ -23,10 +27,6 @@ source="stderr" level="fatal" description="Unknown error"/> - <regex match="Error: bad bait" - source="stdout" - level="fatal" - description="Error: bad bait"/> </stdio> <tests> <test> @@ -40,9 +40,11 @@ This program will read in a SAINT formatted *Prey* file or a single column list (no column name) of Uniprot accessions (e.g. "P00533" or "EGFR_HUMAN"), query the CRAPome database (v1.1) http://crapome.org, and return a file specifying the prevalence of each protein in the CRAPome. **1) Input File** + SAINT formatted *Prey* file or a single column list (no column name) of Uniprot accessions. **2) Species** + Please specify species. Supported species are Human and Yeast. </help> </tool> \ No newline at end of file |