| Previous changeset 0:3f33a8ac8891 (2024-05-30) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/tiara commit eb21d389502b053adf569eb53a0b4cc9e0864fbe |
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modified:
tiara.xml |
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added:
test-data/arc test-data/bac test-data/euk test-data/main_result01.txt test-data/main_result02.txt test-data/main_result03.txt test-data/pla |
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removed:
test-data/bacteria_fr.fasta test-data/mitplas1.fasta |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/arc --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/arc Fri Oct 18 11:50:31 2024 +0000 |
| b |
| b'@@ -0,0 +1,20 @@\n+>archea_HG425166.1_0_15000 HG425166.1 Methanobacterium sp. MB1 complete sequence\n+TTGTTATTGGGTTTAAAACCCTGGATCCCAGCATTCGAATCGCTGGTGTTATTCTGAACATGGTTAAAAACAGGAAACACTACCTCAAAACCAAGGAAGCAGTGGAAAAACTGGCAGATCTACCGGTAATTGGAGGAATCCCCCGGGATGATTTCATCAAAGTTGAGCAACGACACCTGGGATTGGTTCCTGCTGTGGAAAGGGAAAACATTAAGAAAAACATTGATGACTGGGGTCTAGTCATGGGGGAGAATATAGACTTAGACGCCCTCACCAATATAATGAAGAGTTCTGGAAAGTTACCTGAAGGTAGGGAACCTCTTTTCCATGAGGAATACTGTGACCGGGTGAAGATTGGTATAGCCAGGGATGAAGTGTTTAACTTTTATTATCAAGATAATTTAGAAGCTTTGGAATCTAATAATGCTGATCTAATTTATTTCAGCCCGTTACATGATGAAGAAGTGCCGGATGTCGATGGTCTCTACATTGGTGGAGGTTATCCTGAGATATTTGCCCGAGAACTGGAGGCTAATCAATCCATGCGCCACTCCATGAAACAGTTTCACCAAGAGGAAAGACCAATCTATGCAGAATGTGGCGGGCTCATGTATTTAACTCGTTCCATAAACCAGCACCAGATGTGTGATGTTTTCCCCTATGATTCTCATATGACCAAAAAACCCCAAGCCCTAAGTTATGTTATTGCCCAGGCAACACAGGATAACATAATTATTCCGAAAGGGGAAATCTTCCATGGACATGAATTCCACTACTCCCGACTGGAACTGGAGGGGGCCCAACCAAAATTTGCCTTTGATATCCTGCGTGGTAGGGGAGTCACTGGTAACTGTGATGGGCTCATGAGTAAAAACACATTGGCCAGTTACGTGCATACCCATGTGGCAGCTTGCCCCTCCTTTGCCAGTAGAATGGTGAAGGCGGCTGCCCATGATCTTTAATGAGGATTGAGAAGGAAAAAACTTTTTCAATACTTTAATTTTTAAAAAAGCCCTTTTGCTACCTTTTAAAATATTTTCTACTGTAGAATTAAATCAACCAATAATTGGATTGAATAACCTCTTATGGTTAATTAACTCTAATTAATATTTCTACTGTAGACTAAATTACCTTGCATTTTCACTTCATGGTAGTCTACTGTAGAATAAATTTGGTACAACATTTACTACTCCTATGGCTCATTATTGGAAAAAATCAGTGATAAATCAGCGAAGCTAAAAAGTATATAAGCACGTGAAAGAAAGGAGTAGACATATAACACTTTAAATAAATTTTTAAAGCTCGCAAATTATTCCAAAATGAAAAAAAGATTGGAATATGCCCTTCTTGATTTATCCCCAAAAATTTTTTCAAGGTTTTATAGAAAATTAAATTTATTTCATGTATCCAAAGATATTAAGAGATTGTTCAGGAGACTGATTTATGAAATTTAAAAGCGTTGACCTTTTTTCACCTTATATCATGGTGGTAATAATAGCCATCTATGTGGGCCTGGCAGCCATAGCCTACCAGGAACATTTAAGGAATCTTCAATGGATTTCCAGCACCACATGGCTCTATGTATTAATGGGAACCCTGTTTTTTGTGGTTGGAGCATTCCTTCCCAAATTCATTTATAACCGCAGTGCGAAACTCAAATCCCTGTGGGGAGGGGCCAAAGTTACTCCGGAAAATTCAGCACCATGGTACAACAAACTCCTCATTCTACTGGATGAAAGGGTGGTATTAACCGTAGCCATCGTTGGTATCCTCCTACAGATTGTGAACCTCTACATACTGGGAGGAATACCCATCCTAAGCGGATACCTGAAATTCAAGGCCACCACCGATCTCTGGCGATTTGCTTATCCCCTATTTCTCCCAGCCATTACTATTCTTCTAGCTAAATACCCTCGAAAATTGACTTACGCACTTTTCATTATAGGTCTAGTAGTTTTCGCCATCAACGGGTACCGAACCACCACCATGGCCATACTCCTCAGTGGATTTATAACCATCTATTACACTCGGAAGATGAAAACCAGTCACATACTGATTGCTATTTTATTAATTGGATTAGTGGGAATAGCTGCTGGTTACATAGCGGTGATGTCCATCCAATGGCAACAGTGGTCCCTGAATCCTCTGCAACTAGTAGCCTACCGTGCCGGGTTCACCATGATGGTCTTTGACAAGGTCGTGCATATGGCTGGAGCTACTGCCGGAGATTTATTTTATCAGGCACTCTCTACCGGACATCCCCGGGTTACAGTGGGGCAAGTAGTTCTCAACTACCCAGTATCAGGTAGCACACCTACCACCAGTATAACCTCTACCATCTTCGGACCAGCCGTACTAGACTTTGGTTTTTACGCCATGGCCCTGCAGATGTTCATAATTGGAGCACTACTCAGAATAATATACGCTACACAGGTAAAGGCCAACGGGGCTTTAACTGCTCTCTACGCTATTGTTTTAACCCATACCATGATATGGGTAGAAACTGGGCCCACAGACAGTGTGGTTTACCTGTTTTACATCTTGGCATTGGTGGCCGTGGTTTTATACGCAACTCAACTGGGTAGAATCAAAAAAAGTTAATGATAAATAACTTCTATACTTTTCCATGGCCTTAAACCATATTTAATAAATCATGAGTTCGAATAAACCTCTTTTTTTATTTTTAAAATGAATTTTTTACACTTGAAATACACCTCTATTATTTCGGGTAAGGATTTCTCATTTTCCAAAATAGGCAAAAATATTTCAAAAAAAGTTGTGAAGAATATTTTGTAGGTTTAATTTAACGAATTATTTATCTTCAACGATTTAAAAAAAGTTCCAAGTTCTCTCTTCCCGGATAATCCAAAAAGATGTTAATAATAATGGAGTATGTGCTATTATTCTTACAAAGACATCTTATAACTCCTAATTAGATATCAATGCCTTTAAATAGGGCCTATGATGGGTATAATCATCTTATTCTCAATTTATTCAATGACATGTTTCCCCAACAGGATAAACAGAAGGCTCATGCCATAGGGGACTCTTGAAATTATTGTTTTAAATGGGATGTCTCTTTTTTACAAGCCGTCCCGGGAATCTCATATATAAATCTTCCCCTAAAAATTAAATGAAAAAATACTTAAACCGATCTTCCAAAATAGCAAATCGGTGATAATATGGTTGTAAAAATAGGAGTTATTAAAAGCGGTAATATTGGAACCTCTCCTGTCCTTGACTTAGTCTTAGACGAGAGGGCAGACCGACCTAACATCGACGTTAGAGGAGTGGGTTCCGGAGCAAAAATGAACCCAGAACAGGTTGAAGAAGTCGTACCAAAAATAATGGACTTCGACCCAGATTTCGTAATATTCATCAGCCCAAACCCTGGTGCTCCTGGTCCTGCTAAAGCCCGAGAACTATTATCTGAAATGGACATCCCAGCACTGATCATTGGTGACGCCCCTGGAATGGGTAAGAGGGAAGAAATGGATGAACAGGGCTTAGGATACATTGTCGTCCTCGGTGACCCAATGATCGGAGCTCGAAGAGAATTCCTCGACCCAACTGAAATGGCATCCTTCAACGCTGATGTAATAAAAGTACTGGCTGCTACTGGTGCATACCGAGTAGTTCAGGAAACAATCGATGAAATGATCGCAGCCTGCGAAGCAGGAAAAGACATTGAACTACCAAAAGTAGTCATTGATGCTGCTACCGCAACTGAAGCTGCTGGATTTGCTAACCCATACGCTAAAGCAAAAGCTATGGCTGCATACGAAATGGCTGCTAAAGTAGGTGACATAGACCTCAAAGGCTGTTTCATGGTTAAAGATATGGAAAAATACATACCAATCGTGGCTTCAGCCCACGAACTCATTGCTGCAGCTGCTCAA'..b'GGAATCCCTATCTTGCGTTTTTTAAATGTAGGGTAGATTGTGAAGGGATAAAAAGTGAATTTAAAGGGGAGGAAAATTGGCAGATAATCGGATGGATACTCGATGGTGGTATGAATCTCTGCCAACTTTTCCTACGTACCGACAGTATGTACCTATAGCTGAGGAGAGTGGACCTCTACCTTTATTATAGGTATCTTACAGGGAGTGGGTAAACTTCAGTGAATTTATATTTCTTTACAAATTTCCTGGTGGTTTCCCATTCCATCTCCCTATATGCGATATGAGTATATATACATTTCGATTTCCTGATCTGGGAATACATAAAATTGAAAAATTCAACGGGTAAAAATTTGAAAAAAGAATTAAAATTAAAAAAATAAAGGAGGAAAAGATAAAACTTACTTTCCAGCCATCAATCCCGAGAGTTTGTTCTGCCAGGACTTGGAACGGATATTTTCCAGATTCATCTTGTCCCGTTTTATAGTGATACATTTTTGCGGGCAGACATTACTACAGGCACCGCACAGAATGCAGAACTTCTCTTCAATGGATGATTTATCATCTACAATACTTGCTGCATTGCAGGGGCAGACATCCACACAGGCATGGCAGGATTCTCCCTTACATTCTTCGATGTTAACTGAAATTTCACCTTCAAATGGTTTGACGACATGGGCCGCATCTACCGGACAGATTTCCTGACACCAACCACAGTTCACACAGGAATCTTCCTGTAGGATGGCTCTACCGGTGATCTTTGCATCTTCAGGATTCAGTTCATACTCTCCATAGGAACAGGAAGTACAGGCTGCTTTTATGGCATCTACTGGACAGGCACGTTTGCATACCAGGCAATAAACACATTTATCCTCATCTACTTTAATATCCCGGTCCAGGGGCCTATCTCTGGTTATGGATATGGCCTGGGGTGGGCACATCTCTTCACAGATACCGCAGTAAATGCAGTCGTCCTTATTTATCTCGATTTCACCGATCACCAGGTTGGAACGCTTGGGTAATTCCCGTTTGATGGTTATGGCATCCTGGGGGCAAGCAGTTTCACAGGCTTTGCAGTACAGGCATTCTTCATTGTCAATGGAAGCAGAGTGTTTCCACTGGGGATAGGCATCAAGATCTTTGATGTTTTCATCGTTGATCTTAAACTGGAATGCCTCGAAGGGACATGCTGATGCGCACAAACCACATAAAACACAGCTATTTTTGTTGATACTCACGTAGTCCATGTCCACCAGTCCCCGGGCTATGGGTAGCACGGGCCCCAGCCTTAAGGATTCTGTGGGGCAGATACTGGTACATATACCGCATCCCACACATTTATCACTGATGTAATCCAGGGAGCGTTTGTCGTTCCCATCTCTTTCCACTGCACTCATAAATACCATTCCCCTGCATATTAAGATTTAAGCTTTGGATATAGCCTGGTTAGGGCAGTTTGTGATGCATAAATCACAGTCATCACATTTATCCGGATACAAAACGAGTTCGCCATCTTCTTCGACTAAAGCACCCTGTTCGCATAGTTTGATGCACAGTCCTTCTCCGGGGCAGTTAGCGATCTTTCCACATTTTTCTTCGTCTATGACTATTGGCATAATTATCACCCTAAGTAACTGATTGATGCTATAGATATGCGATATGAGTATATAAACATATCGAATTTCATGTGATTATAAAAATGCATTATCATGGCTAAAAAATTTAAAAAAACTGCTATAGTCTTTTAAAGAACGAGATGTTTGCTGATGACTATTTATGAAAATTTGTTAATTATAAAAATAGATATTTAAAAAAAAGATTAAAAGAGGTAATGGTGTTTATTCTTTGGCAACCATTACTTCTGTGGATTTTATAAGGGCTATTACTTCGTCTCCATCTTTAATGTCCAGATCTTTGACGGATTCTTTGGTTATTATTGCGGTAATGACATCTGGAGATTCTATTTTTATTTTAACATTGGCCATCACTGCTCCCACATCAACTCCGGTTACTTTTCCTTTGATCATATTTCTGGCACTTATTTTCATGTTATACCCTCTCCATTTTTTTTAATGTTCCTTACCTAAGCACACTATATTTTATATACTGGCTGATTAAAATAATTTTTTAATGTAAACTGATACATCTCGGTATTTCCACCCATTTTGTATTACGGTGATAAACAATGAACCCAGTACAGTACAATCCCATTGGAATAATACATTCTCCCTTCAAAGAACTCCACGGAATGCCTATACAGCCGGTTGGTGCCCGGGGAGTCAAGGGACAGATAGAACTCGATAAAAAATACGAATCTGGATTAAAAGATTTGGATGGGTTTTCCCACATTCTGCTCATCTATCACTTCCATCTCTGTAACGGCCATTCCCTGGAAGTAAAACCCTTTTTAGATAAGGTAAAACATGGAATATTTGCCACAAGAGCTCCTAAACGACCTAATCCTCTTGGTATTTCTGTGGTTCGCCTGGAAAAGATTGAGGGAACCACCATCCATATCAGTAATGTGGATGTGGTGGATGGAACACCTCTCCTGGACATAAAGCCTCACATTCCTCATTTTGACTGTGAGGAAGGTGAAAAAGTGGCCATAGGATGGTTTGAGGATAAATATCATCAAGCCAAGGATAAAAAATCAGATAAACGCTTTGTTGATTAACAAAGGAAGCAGATCAAACTAAAAACAATAAAATATCATTATCTTCTGGGTAATCTTAAAATAATTATTTAATAATAACGGATCAGGAGAAAAGAGAATAGGAGAGTTTAAAACTAAAACTCTTCCATCTCAGATATATCCATGAGAGTTTCCACGGCCTTAGCCTCCACAGGAATTCCTGCTTCTTTAATGGCGGCTATTGGATTTAAACCTCCTGGTGCAACTATACCTGCATGGTAACGGTCTACCTTGGCGTTGTAAATCAGTTCACTTGGTTTACCTACTTTCAAGATGGAGAAACCAGCTTCTTCGGTCTCATCTAAAATGTCTAGGGCTTCAGGTCGGGCAACGTAGGGTATCTCCCTTAAACTTGCTAAAATTCGACCTCCTTTCTTTAAAGATTTATTTACTGATGTTAATCCCTTGGCGACGTATATTTCGTGGGGATCAAGGGATGATCCACTATAGGCGGTGAGTTCTATGAACCGGGGGGATTTACCCTTGGTTTCCAGTATTCCTCCGTACTGGGGTGTGGAAGCAATACCTTTTTTGGTGAGTATCCCATCGATGGTTAGGCTGCACACTGTGGCTAGACCCTTCTTTCCGTGGGGTCCAGGAACTATCTGGAAGTATTTACTGGTACAATATTCAGGGCGAGAGGCCATAACCTCATCGAATACTTTGAGACCTTCTTCCACATTTTCCTCCTTTAGATAGGAAATGTTCACAATTACTTTTCCCTGTTGGGTTTCTGGATCAAAGTCTACTTCATTTATAAGATTCCAAGCTTTTGAAAGAAGGAATTTAACTTTTTTACCAGTTTTACTCCCACTCTTTTTGATTACATTTTTAGTACTGGTCAGTGATTCCATTTCTGAAAATTCCACCGTGTTTTCTGCCATTTTAATGTTAACATCATAACCAGCTTCTTTGGCAGCACAAAGGGGTGAAATTCCTCCAGTTATGGTAATACCCACCATATCTTTATCTATGGGGATGCCAAGAACAGATTCTCCAGGTTTACCTATCTTCAACAGTCCGCTAACTCCTATTTTTTGTAGGTTGGTGAATAATTTGAGGGCTTTTTCCCGGGCAGTGGCGGGTATCAAGCGGAAGTTAGCGGGAATATTTCCACTTCCTGATTCAATAACTTCCAGTACAGAAGTCATTTCTTGGTCAGTGAAGGCCTCTAAGGGGGTCATAGAAGTCTTTTTATAAGCAATAAGTTCGGTAAAGGTTTGGGGTATGTAATTTTTAATTTCCACTAACCCTCCGTATCGAGGTACAACGGGAATACCTGCTTTAAGTAACATACCATCTATGG\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/bac --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bac Fri Oct 18 11:50:31 2024 +0000 |
| b |
| b'@@ -0,0 +1,20 @@\n+>bacteria_AE015924.1_0_15000 AE015924.1 Porphyromonas gingivalis W83, complete genome\n+ATGAACTACCACTCGACCAATGTAAATGAAATATGGGACGCGTGTCTTCGCATCCTTCAGGATATTGTGGATGAGCGAGCATACCGTACATGGTTCTTGCCTATCATACCGGTATCTATCGAGGGCGATACGCTTACCTTACAAGTGCCGAGTCAGTTCTTCTGTGAGTTTTTGGAGGGCAATTTCGTAGAGCAGCTGCGTACGGTGTTGGGGCGTGTTATAGGTCCCAACGCATCATTACAGTATAATGCCCTTGTAGACAACAGTTCGCCCAAATATCCCGGCACGGTGACATTGGCCGGTTGTGCCGACGGTGGACAGGCAGCCGAACAGTTCGATGTCAATTTGCTACACAGGCACATGCCCAATGCAGCCACCCATAGCGAAGCACAGGATTTCGACACGCAGCTCAATAGCAGGCTCAATTTCCGCAACTTCTACCAGAGCGAATGCAACTATGTAGCTCGCTCAGTGGCTGAAGCCATCGCCGCCAGCCCGGGCAATACGCCGATGAATCCATTCTTTATATATGGAGCTTCCGGTGTGGGCAAGACGCACTTGTGCCATGCCTTGGGCCTTCGTGTCAGAGAGATGCACCCCCGGTTGAAAGTACTATACGTATCGAGTCATTTGTTCGAGATGCAGTTCACTACGGCAGCCCGTATGGGGACGATCAATGACTTCATCGCATTCTACCAGCAAGTGGATGTACTGATCATCGATGACATCCAATGGTTGATCGGCAAGAAGAAAACGCAATTAGCTTTCTTCCAAGTGTTCAATCACCTCTATATGCTTGGCAAACAGATAGTCTTGACGTCGGACAAACCTCCTGTAGACCTTAACGGGATGGAGGAGCGGTTGGTCACTCGTATGGCCGGTGCTACCTGTGTCAAGATAGAACGTCCGGATTTGAAGTTGCGTCGTGAGATACTCCAGCAGCGTACGCTTCAAAGCGGTGTCCGGCTGGACGAATCGGTGCTGAACTTTATCGCCGAAAATGTCTGCGACAATGTTCGTGAACTGGAAGGCACCCTCGTATCCTTGATCACAAATTCGGTGGTTGTAGGTAAGGAAATCGACCTGACCTTTGCCAAACGGATTGTCCGCCAAGCTGTCAGACTGGAGAAAAAGGAAGTCACCATCGAGTGCATCCAGCAGGCAGTCAGCAGAGTATTTCAGGTGCAGATAGAGCAGATGAAAAGCAAGAGTCGGAAGCAGGATATCGTACAGGCTCGTCAGGTGGTCATGTTCCTCTCCAAAAAACACACGGCTCAGTCCTTGTCGGCTATCGGCGAACTGATGGGAGGACGTAACCATGCCACCGTACTCCACGGCTGTCGCTGTGTGACGAACGAGATGGAGATGAATGCCTCATTCCGTTCATCGGTAGAACGTGCCGAACAGTTGATCGCCAATTGATAGCAGGTCTTTATGATCCATCCCACAGCGATAGTAGAAGACGGTTGTGTGCTTGGTCAGGGTACACGCGTATGGCACTTCTCTCACTTGATGTGCGGAGCCGAGGTCGGAGAGAATTGCAACATCGGGCAGAATGTCGTTATAATGCCGGAGGTACGACTGGGGCGAGGCTGTAAGGTGCAGAACAACGTTTCTCTGTATAGTGGTGTCATATGCGAAGATTACGTATTCCTCGGACCGAGTTGTGTATTTACCAACGTGATCAATCCTCGCGCCTTTATTGAAAGAAAATCCGAATACCGCCCCACTCATTTGCACGAAGGCGTCTCCATCGGAGCCAATGCCACTATTCTTTGTGGTATTACGATAGGGGCTTATGCCATGGTAGGTGCAGGAACCGTGGTGATTAGGGATGTACCGCCCTATGCCTTGGTAGTGGGCAATCCTGCTCGCCGGATCGGTTGGGTAAGCCGCGCCGGTCACCGCTTGTCGTTCGATGACAAGGGGATGGCCGTCTGTCCTGAAACGGGCGAACGATATAGAGAGGTCGAAGAAACGGGTACAATAGAACCGGTATCGGACTGATCTAGACCAAATAGCGGCATATCGGCAACCGCTTCATCAGCCGCACAACTCCCCAAGAAACGAAGAAAACCAATCCTACACGGATCGGTATGTTGAGCCATGCGCATTGCATCAGGCTGGGGGTGGTCAGTACAAGTATTTTTGTCACCACGTTCAGCACAGCGATGTGTACTAAGTAGATTCCTAAAATATCCCCCTGCATTTTCCCGATCCGCGCCAATTTTCCTCCACATCCTCCCCAAGAAACGAAGAACGCGAAGAGACTGATAGCAGAAAGAACAATCAAAGGAGAGAGATTACGGTAGAAGTATAGCCCTTCGCCGTGCTCGAAAGCGTACCGACTTGCGAAGAAAAGAGAAATCGTAGAGAGTCCGTACAAGGAAAGAGCCGGTAAAGAACGCTGCGGAGCATGGCTCTTCAGGGTATAACCCACAAGGAAATATCCCAAATAATCCGGCCAAAGAAAAGGGAAAAAGCGGTTGTAACCGAGTATGTAATCGTAGGTGTTGGACAATATCCCCAGCAGTAGCAATATGGTAGAGAGAGTCCAAAGTCGTTTACGAGCAGCCTTCTCTCCATCGGCTTCGCACCTGCGAATTATTTCGTTGAGCAGAGGAACGACTGCATAAAGTCCCAGCAGCATCACCACATACCACAGATGAACGAATGAGCGTCCCTGCCAAAAGCCGGCAAGATAGGAACCTATATCATCGCCCTTGAGCCACAGCCACAGCCAATAGAACGGAAGCCAAAAAGCGAGTAGTACCAGCAGTCGCGGTATTCGTTTCCGATAGAAATCTCCCCACGTCTCATTGCGTCCCAAGACAAAAGCCCCGCTGATAATGACGAATATAGGAACGGCCGGCTGCACGACCGCCTCCCAGCATAGACCGGCTATAAAGTTTGCACCCTCAGCCACTCCTTCGAGAACGTATTCTCCCGAAGTATGGATGCCGATTACCATCAATCCTGCCAGAACTCGCAGGACATCGACGGTGGTATTCCTCCCCTTGGTAGTCATAACTATCTGATAATTGCAGACAAATATACGGGGACTTCTCTTTATCTTTGTCAATAAACCCCTAAACGAAGGATACGACATGAATAAGAAAAGACTCGTCGTCTTGAGTGGCGCAGGCATGAGTGCCGAAAGCGGCATATCGACTTTTCGTGATGCCAACGGATTGTGGGAGAATTATCCCGTCGAGGATGTGGCCTCTATCGATGGGTTTAGGCGCAATCCTGCCCTCGTTCTCAAGTTCTACAATGCACGCCGACGCGACTATGCCGGTTGCAAACCGAATGCAGGCCATATTGGTTTGGCGGAAATGGAGAAGGAGTATGATGTAAGAATCATCACGCAGAATGTGGATGATCTGCACGAGAGAGCAGGCAGCACACACGTCATTCATCTGCACGGAGAGTTGATGAAGAACAGATCTGTGGCCACAGACAGTGTGCTCTATCCCGTAGACCCGACCAATCCCGATCTGCATGTAGGAGATCTGGCACCCGACGGCTGTCAGCTACGGCCGTTTATTGTGTGGTTTGGAGAAGCTGTTCCGATGATAGAGCCGGCCATCGAAGAGGTAACACAGGCAGACATTCTCGTTGTCATCGGCACCTCTCTCAACGTTTATCCGGCTGCCGGACTGTTGAATTATGCTCCTCGCAACTGCCCCATCTATCTGATCGATCCAAAGCCTGTGCGCAGCACCTCCCGGCAAGACATTCGGTATATCCATGCTCCTGCCACGGAAGGCGTAAGGATGTTGCGGCAAGAACTCCGTGATATAGATCGCTAAAAAAACACTAACCCCAAGAACCTGCCATCGTGGTGGTTCTTGGGGTTAATTGTATTTGTTCGTTTTTCGGAAGGCTAATGAA'..b'GCTTGACACCTCCGAAGTAGCGCACTACTGCGACGAATACCTGCGTAAGCCCCAATGAGGTGATCTGCCCGAGGATGGGTTTGCCGGCAGTCCCCGATGGCTCTCCGTCGTCATTGGATCGTGTGCGTTCGCCTTTGGCTCCCAGCTTGTATGCCCAGCATACATGGCGTGCATCGAAGTAGCGGCGACGCAGATCGGCCACAAGCGACAGGGCCTCCTCTTCCGACTTTACAGGATAGGCGAAAGCCAGGAAGCGGCTGCGTTTCTCCGTGTACTGTGCTTCCGAGGGAGCACTGATCGTGAGGTAGGAATCTTCGGCCATGGTTCAAAGGAGAGCCTCATCTGTACCTTCCTCCCGGGCGGCAAACTTTTCGGACAGGACGGAGAGGAGCGTACTCATTTGTTTGATACTGGCGAGCGTCTCTTCGCTCACTTCCTTTTTCTGCAAGCGCAGGGTCAGCAGACCGTATATGGCAGTCAGGCAAGTCTCTATCTCTCCCGTATTGCTCCCTGCACTCTTGGCTCTAAGCTGTACGATGGCAGGGAGCACCTGATAGTAGAGTCCTTGATAAATCATCTCTTTGGGGTCCGCCATCAGTCGTGAGTGTATCTCTTCCATTTGCATGATGGCTATGCGGACGATATTGATATGCCCCTGCTCGCGAACGCCCTCGGTCAGCATCATCTCCACCAGCTCGGCATACCAGCGGTCTATCTCGGCGGTCGTCTCCGTATCTTGCCGGTATTGGGCAATTACAGTGGCGCGAAGCCGCTGCATATCCAGTTCGTTGGCACGTATAAGATCCTCTATCTGCCACATGTAGAGGACGTACTCGGCGATATTGTTGCGCCGTTTTTCCCTTGCTATGATCATGGTCGTTTGTCTCGGATCAGGCCGTTCAGCAACGTTTCGTCCGCATCGTTGGGTGCAGGCTCTATACCCAACAGCCTGCATATGAGCGGATAGATGGTGATATTCGGCAGGTTTTCCACCCTACTGCCCGGACGGAAATCGGGTCCGACAGCCCGGAGTAAAGCCCGCATTTCCGGTGCTTGGTTGTCATAGCCATGTGCCGCTCCCGGACGAACGTCTTCATTTATTGCGAAAAAGACGGTGGAGCCTATGTCCGGAATCACGACCAGTTCGCCCAAACGAGGATTGGTGCCACAGCGCAAACGCTTGGGCACCTCCCCCTTGCGGTAAACCGATATATGTGGAATGGCCCGCAGGATCTCATAGGCTCGCTCGGTATAGGAGGGCTTCGGGTACAAGTGGGTGAAGGCCCCGGTGGCCATGTAGAGGAAACTGTCCGCAGGCAGATAATGCGACAGATTGACACATTTCTCATTTTCGTACGTGGCCATACCGTGATCGGATACTATGATGAAGTCGGTCTGTGCGGCTATGGGCAGAGAGTCCAACCGCTTGCGGAAATAGCCGACCACACTGTCCAACCGCTCTACCATTGCCAGTGTCAGCGGGCTTTCGGGCGTTTGGCTGTGTCCGATCATATCCGGCTCCTCGATGTACCACATGAGCAAGCGCGGTCGCTCCTTTTCGGGCAGTCCGAGCCACGCGATGACGGAGTCGGCACGGTCACGAAACGGAACGGTGGAGGAGAATTTTTTCCACCGCCACGGCCGATTTCCGTTCACAGCCGTTTCGGATCCTACCCAAAAGTAGACACCGGTACGGATGCCTTGGCGTGCGGCCGTATTCCAAACCGGCTCGCCGCCCCAAAATCCGGGGGTCTCCACGGCTTTTCGGTCGGATATACGAAAGATGCCCAGTAGCGAATCCACAAACTCATTGGCTACGATACCGTGATGATCGGGGTAAAGCCCCGTAGCCATGCTGTAATGATTGGGAAATGTAAGCGAGGGGAAGCATGGTTGGAGCGACCCGCTCAATCCCTCCTGTGCCATCCGATCCAACGCCGGTGTACGTGCCCGATCGGTATAGTCCGGTCGGAAGCCGTCCAAAGACAGGACTACGACGTACCGTTCCGACTGCTTAGGTGTTTGTCGGACTGTTCTGCAACCGACATAAGAGAAGGCAAGAAGCAGAAACAAGATAAAAGGAAATAGAGATAAATGCTGTCTCATTTTTATAAAAATCTTTCGATTTGATGCCGTCAAAGGTAAGGGATTCCTCTTTCATTACTGTAAGCAGATCGGTTTTTGAGCCGATGATTTTCAGCGTGTCGTCGGGAGTGAAACCATACCATCGGGAGTAAAAAATCACAGGAATACCCACAGCCGACCCTTCCAACCTCTCCAAAATCCGGGGGTCTCCACGGCTTTTCGGTCGGGAAAATGTCATTGTTCGGCGTGCAAACCTGCAAATCGGACACGAAATTCACTGCTCCAACTTGGAGGACGACAAATCCGCGCGGAAAATGCTTCCTCCGGCTTGGAGCGACTTTTTTCGGCCCGCAATGCAGATTTCCTGTCGGACATTCCCTCTTTTGCCGAAAGTACCCGTATATCCCTTGCAGAGAGTGAAACTGTCGCACGGCCTTTTCGTCGAATCCTTTTGCCGCAGAGTCGATCCCTTTATTCGTTGCACATCCGGGCTTCGGCAAATACGGCTTCCTTACTCCGTTAATGCTCTCATTCATTTAGAGAATGGGATCGGGAAAAATAAGAGACACGAACGGAATCTTACCTATCTTCGTCCTGAAATTATGGCAGATCGTAGAAGAACCGATGACAATAAGGGTGCGAGAGAGGTGGTATTGCTGCTGAATATCGGCTCGCCGGACAGCCCTGAGGAGAAGGACGTGGCGCGCTACCTCAATTCTTTTCTGACCGACAGGAGGATCATCACCTTGCCTTTTCTCCTGAGACAGTTACTCGTGAGAGGTATCATCACTCCTTTCAGAAAGAAAAGTTCGGCACAAAAATATCGGACCGTTTGGGACGAAAGCACCCGGTCTTTCCCCCTCATATCGCATACGAAAGCCATAGCCCGGGCACTGGCACATACGGGCAGAGAAGTCCATGTAGCCATGCGCTACGGCAAGCCGGCTGTGGCCGATGTGCTGAAGGAGCTGCCACACGGCCGAAGCCTCGTCGTCCTCCCGCTCTTCCCACACTACGCCATGAGCAGCTACGAGACGGCCGTGGAGCATTGCAAGGCCGAAATCCGCCGCCTTTGTCCGAATCTTTCCTTCCGCGTCGTGCAGCCTTTCTACGCACACGAAGCCTATATTCGTGTCCTTGCCGATAACATCAGACCCTATCTGACGAAGCCTTTCGACAAGCTCATTCTTTCCTATCACGGCATTCCCCGCGATCATTTGGACAAGACCACCCGACAGGCTTTGAATCTCCGGCATCCCGAAGGATGCTGCACGGAGGAGGATCCTACGGCAAACGTCTGCTACCGCTATCAGACTTACAGGACGACGGCTCTCATCCGCGAGGCACTTGGCTTGGCCGAGGAGCAGGTGGAGCAGGTGTTCCAGTCACGTGTAGGCCATACCGAATGGCTGCGCCCCTATTTGATCGAACGACTGTCCGCTTGGCCGCAAGAGGAAACAAAACGTATCCTCATAGCCTGCCCCTCCTTCGTGTGCGACTGTCTGGAGAGCCTCGAAGAAGTAGCCGATCACGGACAAAGCATTTTCAAAAAAGCAGGAGGTGCGGATTTCACTTACATCCCCTGTCTCAATAGCGGGGCGAATTGGATCGATGCTCTCCGAAACATTTTAGAGGAATAATACAGCATGCTCAGTTATCATACCGATATACCGACAGACCTGCCCCTCCTGAGGCAAGCCGTCGAAGCCATCCGCCGGGAAGAATCCGGCGGTGCCGTACCCGACTCCGATCGGCCGAGGGTGATATACGAGGCGCGCAACCGGCTTTACGCCATCCGTACCGCACAGGGAGAGCAGGTGGTGAAGAGCTTCCGGATCCCTATTGCCATTCAGCGCGTGGTCTACTCATTCTTCCGCCCCTCGAAGGCTGCTCGCTCTTATCGCAACGCCATA\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/bacteria_fr.fasta --- a/test-data/bacteria_fr.fasta Thu May 30 11:10:39 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2511 +0,0 @@\n->bacteria_AE015924.1_0_15000 AE015924.1 Porphyromonas gingivalis W83, complete genome\n-ATGAACTACCACTCGACCAATGTAAATGAAATATGGGACGCGTGTCTTCGCATCCTTCAG\n-GATATTGTGGATGAGCGAGCATACCGTACATGGTTCTTGCCTATCATACCGGTATCTATC\n-GAGGGCGATACGCTTACCTTACAAGTGCCGAGTCAGTTCTTCTGTGAGTTTTTGGAGGGC\n-AATTTCGTAGAGCAGCTGCGTACGGTGTTGGGGCGTGTTATAGGTCCCAACGCATCATTA\n-CAGTATAATGCCCTTGTAGACAACAGTTCGCCCAAATATCCCGGCACGGTGACATTGGCC\n-GGTTGTGCCGACGGTGGACAGGCAGCCGAACAGTTCGATGTCAATTTGCTACACAGGCAC\n-ATGCCCAATGCAGCCACCCATAGCGAAGCACAGGATTTCGACACGCAGCTCAATAGCAGG\n-CTCAATTTCCGCAACTTCTACCAGAGCGAATGCAACTATGTAGCTCGCTCAGTGGCTGAA\n-GCCATCGCCGCCAGCCCGGGCAATACGCCGATGAATCCATTCTTTATATATGGAGCTTCC\n-GGTGTGGGCAAGACGCACTTGTGCCATGCCTTGGGCCTTCGTGTCAGAGAGATGCACCCC\n-CGGTTGAAAGTACTATACGTATCGAGTCATTTGTTCGAGATGCAGTTCACTACGGCAGCC\n-CGTATGGGGACGATCAATGACTTCATCGCATTCTACCAGCAAGTGGATGTACTGATCATC\n-GATGACATCCAATGGTTGATCGGCAAGAAGAAAACGCAATTAGCTTTCTTCCAAGTGTTC\n-AATCACCTCTATATGCTTGGCAAACAGATAGTCTTGACGTCGGACAAACCTCCTGTAGAC\n-CTTAACGGGATGGAGGAGCGGTTGGTCACTCGTATGGCCGGTGCTACCTGTGTCAAGATA\n-GAACGTCCGGATTTGAAGTTGCGTCGTGAGATACTCCAGCAGCGTACGCTTCAAAGCGGT\n-GTCCGGCTGGACGAATCGGTGCTGAACTTTATCGCCGAAAATGTCTGCGACAATGTTCGT\n-GAACTGGAAGGCACCCTCGTATCCTTGATCACAAATTCGGTGGTTGTAGGTAAGGAAATC\n-GACCTGACCTTTGCCAAACGGATTGTCCGCCAAGCTGTCAGACTGGAGAAAAAGGAAGTC\n-ACCATCGAGTGCATCCAGCAGGCAGTCAGCAGAGTATTTCAGGTGCAGATAGAGCAGATG\n-AAAAGCAAGAGTCGGAAGCAGGATATCGTACAGGCTCGTCAGGTGGTCATGTTCCTCTCC\n-AAAAAACACACGGCTCAGTCCTTGTCGGCTATCGGCGAACTGATGGGAGGACGTAACCAT\n-GCCACCGTACTCCACGGCTGTCGCTGTGTGACGAACGAGATGGAGATGAATGCCTCATTC\n-CGTTCATCGGTAGAACGTGCCGAACAGTTGATCGCCAATTGATAGCAGGTCTTTATGATC\n-CATCCCACAGCGATAGTAGAAGACGGTTGTGTGCTTGGTCAGGGTACACGCGTATGGCAC\n-TTCTCTCACTTGATGTGCGGAGCCGAGGTCGGAGAGAATTGCAACATCGGGCAGAATGTC\n-GTTATAATGCCGGAGGTACGACTGGGGCGAGGCTGTAAGGTGCAGAACAACGTTTCTCTG\n-TATAGTGGTGTCATATGCGAAGATTACGTATTCCTCGGACCGAGTTGTGTATTTACCAAC\n-GTGATCAATCCTCGCGCCTTTATTGAAAGAAAATCCGAATACCGCCCCACTCATTTGCAC\n-GAAGGCGTCTCCATCGGAGCCAATGCCACTATTCTTTGTGGTATTACGATAGGGGCTTAT\n-GCCATGGTAGGTGCAGGAACCGTGGTGATTAGGGATGTACCGCCCTATGCCTTGGTAGTG\n-GGCAATCCTGCTCGCCGGATCGGTTGGGTAAGCCGCGCCGGTCACCGCTTGTCGTTCGAT\n-GACAAGGGGATGGCCGTCTGTCCTGAAACGGGCGAACGATATAGAGAGGTCGAAGAAACG\n-GGTACAATAGAACCGGTATCGGACTGATCTAGACCAAATAGCGGCATATCGGCAACCGCT\n-TCATCAGCCGCACAACTCCCCAAGAAACGAAGAAAACCAATCCTACACGGATCGGTATGT\n-TGAGCCATGCGCATTGCATCAGGCTGGGGGTGGTCAGTACAAGTATTTTTGTCACCACGT\n-TCAGCACAGCGATGTGTACTAAGTAGATTCCTAAAATATCCCCCTGCATTTTCCCGATCC\n-GCGCCAATTTTCCTCCACATCCTCCCCAAGAAACGAAGAACGCGAAGAGACTGATAGCAG\n-AAAGAACAATCAAAGGAGAGAGATTACGGTAGAAGTATAGCCCTTCGCCGTGCTCGAAAG\n-CGTACCGACTTGCGAAGAAAAGAGAAATCGTAGAGAGTCCGTACAAGGAAAGAGCCGGTA\n-AAGAACGCTGCGGAGCATGGCTCTTCAGGGTATAACCCACAAGGAAATATCCCAAATAAT\n-CCGGCCAAAGAAAAGGGAAAAAGCGGTTGTAACCGAGTATGTAATCGTAGGTGTTGGACA\n-ATATCCCCAGCAGTAGCAATATGGTAGAGAGAGTCCAAAGTCGTTTACGAGCAGCCTTCT\n-CTCCATCGGCTTCGCACCTGCGAATTATTTCGTTGAGCAGAGGAACGACTGCATAAAGTC\n-CCAGCAGCATCACCACATACCACAGATGAACGAATGAGCGTCCCTGCCAAAAGCCGGCAA\n-GATAGGAACCTATATCATCGCCCTTGAGCCACAGCCACAGCCAATAGAACGGAAGCCAAA\n-AAGCGAGTAGTACCAGCAGTCGCGGTATTCGTTTCCGATAGAAATCTCCCCACGTCTCAT\n-TGCGTCCCAAGACAAAAGCCCCGCTGATAATGACGAATATAGGAACGGCCGGCTGCACGA\n-CCGCCTCCCAGCATAGACCGGCTATAAAGTTTGCACCCTCAGCCACTCCTTCGAGAACGT\n-ATTCTCCCGAAGTATGGATGCCGATTACCATCAATCCTGCCAGAACTCGCAGGACATCGA\n-CGGTGGTATTCCTCCCCTTGGTAGTCATAACTATCTGATAATTGCAGACAAATATACGGG\n-GACTTCTCTTTATCTTTGTCAATAAACCCCTAAACGAAGGATACGACATGAATAAGAAAA\n-GACTCGTCGTCTTGAGTGGCGCAGGCATGAGTGCCGAAAGCGGCATATCGACTTTTCGTG\n-ATGCCAACGGATTGTGGGAGAATTATCCCGTCGAGGATGTGGCCTCTATCGATGGGTTTA\n-GGCGCAATCCTGCCCTCGTTCTCAAGTTCTACAATGCACGCCGACGCGACTATGCCGGTT\n-GCAAACCGAATGCAGGCCATATTGGTTTGGCGGAAATGGAGAAGGAGTATGATGTAAGAA\n-TCATCACGCAGAATGTGGATGATCTGCACGAGAGAGCAGGCAGCACACACGTCATTCATC\n-TGCACGGAGAGTTGATGAAGAACAGATCTGTGGCCACAGACAGTGTGCTCTATCCCGTAG\n-ACCCGACCAATCCCGATCTGCATGTAGGAGATCTGGCACCCGACGGCTGTCAGCTACGGC\n-CGTTTATTGTGTGGTTTGGAGAAGCTGTTCCGATGATAGAGCCGGCCATCGAAGAGGTAA\n-CACAGGCAGACATTCTCGTTGTCATCGGCACCTCTCTCAACGTTTATCCGGCTGCCGGAC\n-TGTTGAATTATGCTCCTCGCAACTGCCCCATCTATCTGATCGATCCAAAGCCTGTGCGCA\n-GCACCTCCCGGCAAGACATTCGGTATATCCATGCTCCTGCCACGGAAG'..b'GCCTTTGGCTCCCAGCTTGTATGCCCAG\n-CATACATGGCGTGCATCGAAGTAGCGGCGACGCAGATCGGCCACAAGCGACAGGGCCTCC\n-TCTTCCGACTTTACAGGATAGGCGAAAGCCAGGAAGCGGCTGCGTTTCTCCGTGTACTGT\n-GCTTCCGAGGGAGCACTGATCGTGAGGTAGGAATCTTCGGCCATGGTTCAAAGGAGAGCC\n-TCATCTGTACCTTCCTCCCGGGCGGCAAACTTTTCGGACAGGACGGAGAGGAGCGTACTC\n-ATTTGTTTGATACTGGCGAGCGTCTCTTCGCTCACTTCCTTTTTCTGCAAGCGCAGGGTC\n-AGCAGACCGTATATGGCAGTCAGGCAAGTCTCTATCTCTCCCGTATTGCTCCCTGCACTC\n-TTGGCTCTAAGCTGTACGATGGCAGGGAGCACCTGATAGTAGAGTCCTTGATAAATCATC\n-TCTTTGGGGTCCGCCATCAGTCGTGAGTGTATCTCTTCCATTTGCATGATGGCTATGCGG\n-ACGATATTGATATGCCCCTGCTCGCGAACGCCCTCGGTCAGCATCATCTCCACCAGCTCG\n-GCATACCAGCGGTCTATCTCGGCGGTCGTCTCCGTATCTTGCCGGTATTGGGCAATTACA\n-GTGGCGCGAAGCCGCTGCATATCCAGTTCGTTGGCACGTATAAGATCCTCTATCTGCCAC\n-ATGTAGAGGACGTACTCGGCGATATTGTTGCGCCGTTTTTCCCTTGCTATGATCATGGTC\n-GTTTGTCTCGGATCAGGCCGTTCAGCAACGTTTCGTCCGCATCGTTGGGTGCAGGCTCTA\n-TACCCAACAGCCTGCATATGAGCGGATAGATGGTGATATTCGGCAGGTTTTCCACCCTAC\n-TGCCCGGACGGAAATCGGGTCCGACAGCCCGGAGTAAAGCCCGCATTTCCGGTGCTTGGT\n-TGTCATAGCCATGTGCCGCTCCCGGACGAACGTCTTCATTTATTGCGAAAAAGACGGTGG\n-AGCCTATGTCCGGAATCACGACCAGTTCGCCCAAACGAGGATTGGTGCCACAGCGCAAAC\n-GCTTGGGCACCTCCCCCTTGCGGTAAACCGATATATGTGGAATGGCCCGCAGGATCTCAT\n-AGGCTCGCTCGGTATAGGAGGGCTTCGGGTACAAGTGGGTGAAGGCCCCGGTGGCCATGT\n-AGAGGAAACTGTCCGCAGGCAGATAATGCGACAGATTGACACATTTCTCATTTTCGTACG\n-TGGCCATACCGTGATCGGATACTATGATGAAGTCGGTCTGTGCGGCTATGGGCAGAGAGT\n-CCAACCGCTTGCGGAAATAGCCGACCACACTGTCCAACCGCTCTACCATTGCCAGTGTCA\n-GCGGGCTTTCGGGCGTTTGGCTGTGTCCGATCATATCCGGCTCCTCGATGTACCACATGA\n-GCAAGCGCGGTCGCTCCTTTTCGGGCAGTCCGAGCCACGCGATGACGGAGTCGGCACGGT\n-CACGAAACGGAACGGTGGAGGAGAATTTTTTCCACCGCCACGGCCGATTTCCGTTCACAG\n-CCGTTTCGGATCCTACCCAAAAGTAGACACCGGTACGGATGCCTTGGCGTGCGGCCGTAT\n-TCCAAACCGGCTCGCCGCCCCAAAATCCGGGGGTCTCCACGGCTTTTCGGTCGGATATAC\n-GAAAGATGCCCAGTAGCGAATCCACAAACTCATTGGCTACGATACCGTGATGATCGGGGT\n-AAAGCCCCGTAGCCATGCTGTAATGATTGGGAAATGTAAGCGAGGGGAAGCATGGTTGGA\n-GCGACCCGCTCAATCCCTCCTGTGCCATCCGATCCAACGCCGGTGTACGTGCCCGATCGG\n-TATAGTCCGGTCGGAAGCCGTCCAAAGACAGGACTACGACGTACCGTTCCGACTGCTTAG\n-GTGTTTGTCGGACTGTTCTGCAACCGACATAAGAGAAGGCAAGAAGCAGAAACAAGATAA\n-AAGGAAATAGAGATAAATGCTGTCTCATTTTTATAAAAATCTTTCGATTTGATGCCGTCA\n-AAGGTAAGGGATTCCTCTTTCATTACTGTAAGCAGATCGGTTTTTGAGCCGATGATTTTC\n-AGCGTGTCGTCGGGAGTGAAACCATACCATCGGGAGTAAAAAATCACAGGAATACCCACA\n-GCCGACCCTTCCAACCTCTCCAAAATCCGGGGGTCTCCACGGCTTTTCGGTCGGGAAAAT\n-GTCATTGTTCGGCGTGCAAACCTGCAAATCGGACACGAAATTCACTGCTCCAACTTGGAG\n-GACGACAAATCCGCGCGGAAAATGCTTCCTCCGGCTTGGAGCGACTTTTTTCGGCCCGCA\n-ATGCAGATTTCCTGTCGGACATTCCCTCTTTTGCCGAAAGTACCCGTATATCCCTTGCAG\n-AGAGTGAAACTGTCGCACGGCCTTTTCGTCGAATCCTTTTGCCGCAGAGTCGATCCCTTT\n-ATTCGTTGCACATCCGGGCTTCGGCAAATACGGCTTCCTTACTCCGTTAATGCTCTCATT\n-CATTTAGAGAATGGGATCGGGAAAAATAAGAGACACGAACGGAATCTTACCTATCTTCGT\n-CCTGAAATTATGGCAGATCGTAGAAGAACCGATGACAATAAGGGTGCGAGAGAGGTGGTA\n-TTGCTGCTGAATATCGGCTCGCCGGACAGCCCTGAGGAGAAGGACGTGGCGCGCTACCTC\n-AATTCTTTTCTGACCGACAGGAGGATCATCACCTTGCCTTTTCTCCTGAGACAGTTACTC\n-GTGAGAGGTATCATCACTCCTTTCAGAAAGAAAAGTTCGGCACAAAAATATCGGACCGTT\n-TGGGACGAAAGCACCCGGTCTTTCCCCCTCATATCGCATACGAAAGCCATAGCCCGGGCA\n-CTGGCACATACGGGCAGAGAAGTCCATGTAGCCATGCGCTACGGCAAGCCGGCTGTGGCC\n-GATGTGCTGAAGGAGCTGCCACACGGCCGAAGCCTCGTCGTCCTCCCGCTCTTCCCACAC\n-TACGCCATGAGCAGCTACGAGACGGCCGTGGAGCATTGCAAGGCCGAAATCCGCCGCCTT\n-TGTCCGAATCTTTCCTTCCGCGTCGTGCAGCCTTTCTACGCACACGAAGCCTATATTCGT\n-GTCCTTGCCGATAACATCAGACCCTATCTGACGAAGCCTTTCGACAAGCTCATTCTTTCC\n-TATCACGGCATTCCCCGCGATCATTTGGACAAGACCACCCGACAGGCTTTGAATCTCCGG\n-CATCCCGAAGGATGCTGCACGGAGGAGGATCCTACGGCAAACGTCTGCTACCGCTATCAG\n-ACTTACAGGACGACGGCTCTCATCCGCGAGGCACTTGGCTTGGCCGAGGAGCAGGTGGAG\n-CAGGTGTTCCAGTCACGTGTAGGCCATACCGAATGGCTGCGCCCCTATTTGATCGAACGA\n-CTGTCCGCTTGGCCGCAAGAGGAAACAAAACGTATCCTCATAGCCTGCCCCTCCTTCGTG\n-TGCGACTGTCTGGAGAGCCTCGAAGAAGTAGCCGATCACGGACAAAGCATTTTCAAAAAA\n-GCAGGAGGTGCGGATTTCACTTACATCCCCTGTCTCAATAGCGGGGCGAATTGGATCGAT\n-GCTCTCCGAAACATTTTAGAGGAATAATACAGCATGCTCAGTTATCATACCGATATACCG\n-ACAGACCTGCCCCTCCTGAGGCAAGCCGTCGAAGCCATCCGCCGGGAAGAATCCGGCGGT\n-GCCGTACCCGACTCCGATCGGCCGAGGGTGATATACGAGGCGCGCAACCGGCTTTACGCC\n-ATCCGTACCGCACAGGGAGAGCAGGTGGTGAAGAGCTTCCGGATCCCTATTGCCATTCAG\n-CGCGTGGTCTACTCATTCTTCCGCCCCTCGAAGGCTGCTCGCTCTTATCGCAACGCCATA\n-\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/euk --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/euk Fri Oct 18 11:50:31 2024 +0000 |
| b |
| b'@@ -0,0 +1,20 @@\n+>eukarya_NW_012132931.1_0_15000 NW_012132931.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold8033, whole genome shotgun sequence\n+gatcagtagtatagtacagggtcaacaacgaatagttaggaaagaaaagagaacccccctccaagctgtaacatctaatctatatctaattgttatctgataagataagataggcatccgcttattctggaatatttATTcagaaaactgtgacaacacgctaggtattcttagatagccaatagcgtattgtgagcatcagtcatcctaagtgttaggtgtactaccagtagtatttggggtctggtcccacatgtataaataccagataatacagcatagtacagcagtctgatcttatTAGATCATACTTTGTCTACTTCACTCAACTCTTCCTCTAAGCTAACCGCTCTCAAGACAAGTCAAGCCTcttacctcttgcaactaccagaaccacacaagtgagtgctggggttagagttagggttagggtcaagggtgatatCTTGACAGTATTCTCCTGAGATTCATAGATATCAGACCCAAAGATGTGATGTGCTGGATAGCTAGGGTGATTTGGTGCCTGTCAAAGTATTGTCCTGATACTTGACACTCtctctaaccctaacccctagatactcacttgtagtggtagGTAGTTGATATAGCTGGGTTGCTGGTTGGCTATAGGAGCTGGTGGGCTCAGAGTTGAGAGTGTGTAAGTTGATGAGGTTAGACAAGTAGTATAACTAGTCTACCCTCTCaatgctgtattgctctggtatttatacaagagggaccagacccctaatactactggtagtacacctaacaccttaggatgactgatgctcataatacactattggctatctaagaatacctagcacgTGAACCATCACCATGTattcggtcagcagtctactatgtgatgatcacctgaatgactgtgtgtgtctctagtacaaatggggaaaatcttgtgtgaacatatgatagcccatttgccctgcttctgataagctagacacctgactagtaacagTGATgccatgcattatgctatccttatctctgtagatatctaattggataagatatagatcatctagatgctaaagataagatagatgccatgaaattctgtgacagtgCCAGAGATAATGTGAAACTATATCTGGACAGGCTTCAATCTTCAATCCAGCACAAATCAACCAGTAGACCCACACACTCAAGACATTCTTTAGCACCAGCAGACTCTAGCTCACCTCTATATATCATGAGATGACAATCTTGAGATGAGATTTGACTAATGATATAGAAGAAAAGAGGCACTTTGTCTACCTCAATTCTCGATACAGGCACCATTCAGGGAGTGTCAAGGGGAATTGCACAGACCTGGCAACACAGTGCATCAGCACCTCTGGCAGTAATAGTGAAGGTCTAATTCAGGACATCTAAGTGATAGATGACCTCAAGTGGAAGTAAGCTATGGAGGTACATTGCATGCAATTCCCATCAGGAGACAGGCATGGTGACAGAGCAAATGAGAGCCTTAAAATAGGAGGTGAACAAAGCAATACCCTAACTTCAACCACTATAGCTAGGTGTCTTTGACGTGTGGCTGGGTGCTCGAATTCATCAGTAGCAACATGTAATATACATAAAATAGAAAGAGACAGACTGTCAAAACAGGTGCGCCATGCTCTGCACCGTACCTTTGAAATGGAGGGAGTCCGCCCGCTAAGTTCGCGGTCGTATGGCGGGGCGTGCGGAGGAATGTCCTGGGTCGCGAATTCAGGCCATCATGAGACTCTCCTGGGCCACTTCCGGCCCGCCTGCGGCGAGCAACCTCCTTGGAATGACCAATTTGCCCGCTGGGTGACATGTGCCACGCGATAGAACCCATCATATATTCTTATCATTTATCTTGATGCCAGACTCTAGTTTCTTTTTCCCCCAGGCTGCTCCTCGACAAATATTGTCGAACTTGAAAGCTGCCATTTCATATTTGACTAGCGGAGATGGATAAGATCCGCAGAGGCAACAACGATCATGCATTAGCCACAGTTTGAAATGATCGAACAGGGTCGTTCACAGGTTGTACCTATGTTGCACTTGGGTAATCAGTACTCAACGttcgctcgtcctcctgttcctacATTCGACCTCTGACAAACACTGTCTTCTGGACCTCTAATAGTACCACGCCCACGGTTGGTTATATTGTCTCACACGTCTCACCACAACATGTACATACAAGTGTCACTTCGAAACTCAATCATGCCCCTGGCATGCGCCTCGCTATTTAATCCAGTGTGTTTTCGACATCAATATGTCACGCCATGAAGGTTTCTTCTCTactctctcttctcgccattTCTGCACTTCAGCTGCTGTCAGCTGTAGCACAGTCCAATGTCACAGTTCTCGCAAAGGATCCGCAAATTGTGTATGCGGGCGGTTGGACAAACCAAGAGAATGGTCAATACTTCTACGCTAACGGACCTGGGTCGTCATTTTCTTTCTCGTTTACAGGTAAGTATAGATTTACATCACGTATATACCATTTTAACTAGGATCGAGTACAGGGACAGCAGTCTATTATCATTCTGTGATAAATCCGAACGGAGGAGTAGCAAGCATTGTCCTGAATAATGGCTCTCCGACCCTTGTAGATGAATCAGAAAATGCTTACGAAGGCGAAGCTCCTATACCGGCTGTACTTTGGTCGAAGACCGATCTGGATGGTGAAAAAAACCATGTACTGAATGTAAGCTATGTAGGCAGTGGAGTATTAGGTGGTGCCTATGTTGAGTTCTATTATCTTCAGTATGTATGTGCTCGGAATAGTGTCTATTGTATCAACATTTACGATACCCATCCAGATATACAAGCTCGGGTAGCCAGACAAATGAAACCGGAAGTGCAGGTCCGATCTCAGGTATTGTTTTTTTGCGGTCCGCATCAGATATTCCTGTTAACACCGCAAGAGGTCAGTAAGTCCTAGCGGAGCTCAAGACTCGCCTTCGATGAGCGGAACATCCAACGGTGGTGCACCTACCGCCTCACTTAAATCTTCAGCGAGCgctgcctcatcctctcACTTTTCAAATACAAGGGCTATTATCATTGGTACTGTGGCTGGAGTGGGAGGCACCCTGATCGTTGCAAGTGCGATCATGTTATTCTTGTGTCGTAAAGGCTGTAGATGGACTGCAAAGATCAATCATACGCGTAAGTTTTAAGCCTACTCCATGCACCTCCATTAGATCCATCTCAACCTGCTTTTACAGCATCACCTTACAATATGAGCACTGTCGAGACTCTGCGACCCCTACGCAGGAAGACACCCGCAATGTCTTCCCTTCCGCCGAATGTCGATCAGCCATCCGCTCCCAACTCATCTCGTCCTGACACACCTAGCGAGCTCCTCACCCCGGCTAATGAAGACGGGCTGACGCCAGAAACACTCCCGTATTCTTCTTATAACGCGAGAGTGATTAAGATGATGCATATTTTGGGATCGTCTCGTTCCACTAGTCCACCAAATGAGCACCACATTACTCCTGGGCCTAGTGCTCTTCCGAGTCATAGTCAGCCTCGTCAGGTGTCCTTGGTTGGTTCTGATAGTTTAACTTACTTATCTGATCCACCGCCTGTGTATGATGGACGTAGGACAGCGTAGCGGTAGTCGGTCTCGTCACGGTATGAGCAATATACTAGAACAATATACTAGTAGCTCTCCCAAATTCCATTTAGTATACATCCACTCACAATCGACTTCAATTGGATTCTAACCATCGCCACGAGCTAATTCTTGTATTACATGACTTGACACCGAGGAAAAGGTATGCTATAATCGTTCTCTAGTGTTCGAACCCACTTATTAGAGC'..b'ATAGGAAGGTTGTACTTTGGGGCCTCAAAGGCACTGACGGCGAAGGAAAGACCCTGCGGGTATTTTAGTCTGTGAATGACGCAGACGTGGCAAAAGACGAACGGtcccgacgaggacgagcttcgAGGTGTCCAGACGTTGCAAAAAGTCGGCCATGATAGAGGCTGGTAAGCTGCAGGAGGGAAGAAGGGAAATGCTGCGGTGTGTGGGGAAGGAAGCGCGGACTGGTTTGGGTTGCGCGTCTGCGCACTCCGCCACCGACGAAACTGATCGCAGCTATGTCCGAGTCCAAAACTGTTTTGGATCTCCTCTCCTATGTTCGCACCAGAGTcaccgtcgatgtcgacTCGATGGATCCTGCCGTCGCTGCTCGGCATACCTCAGGTAGCAAATTCTGCGACATGACCTCCAATCAGGCCATCGTCTACTCTGAGGCCGCCAAGCCTGAGCGCGCACAGCTCTTCAAGACTGCTTGTCAACTGGCACGGGTCAGCGGATCAGACACGGAGAGTCAGATAACAGAGGCTTTGGACATTTTGGTCGGAATCATCTCTCAGATCATGGTGGTCCGATCAGAGCTTAACCACACGCACAGACTGTCCTCCTCGCAAAGGAGGTGTATCCCTACCTTACTGGTCGTGTTCATGCACAGACCTCTCCTCCCACTGCCTATGACACTGAGAAAACCATCGCACACGCGAGGAAGCTCGTCGAACTTTTTGAGGCAAACGGCATACCACGGTGTGCATCATGCTAATATTACCGCTGCGTCACTGAATCATCAGCGCGTACAATGCAGCGACCGGGTGTGTATTAAGATTCCTGCGACACCAGAGTCAATAATAGCCTGCCAAAGGCTCGAGAGTACCGGCATCAGGACTCTTGCGACTTGTCTTTTCTCCCTTCCACAGGCCGTGGCTGCTTCCCAAGCAGGCTGTCTCTACGTCGCGCCGTACTTCAACGGTGACTGATTGGCTTATCGTGAATCAGATTTGACCCAATGACTAATAGTTCTTTTCAACAGAGCTCCGAGTGCACTTTGAACCGAAAATATGGAAGGAATACAACGACACAGCGAGAGAACATCCGATGGCGCCTGTCATCGCCTCTATAGTCCAAGAGTTTAGAGCAATTGATTCGAAGACGCTAGTCATGCCTGCTAGGTAAGGGGCCATGCACCTTCGTGGAAAAATATCTCAACATTACTGTAAAGCATCGTAACCTCGACAGAGGTATGTATATTCAATATGATTTCCATCGAGTATAATTAAGCCGCTCCCATTCGTGAGGTCATTGCATTGGCGTCGTTGCAACCTGATCATCTCACGCTAGCGGGGGCAGTCTTGGACCAGctagcagcagcatcgaatGTCAAACTTCTTGATGAACCGAATACACATGCCTCTCTTAGCATAAACACTACGAGTAATGGCGCTTCATATGGAAAAGGTTGCTTTATAGTGATGTGCTCTGCGGAGGCTATTACTTATGACAACACTGAATATAGATTTTCTTGCTGATGGCGCGAGCGCACTCAGACAGGCTCTAGCTGCTGATGCAGAGGCTACACGCAAACTCGCTGACGCGCTGAAGATATTCGGCGAGATGGAGCAGAAAACCAGGGAACTCGTAAGGAAAGAGCTGGGTGAGATGTAAGGGCTACAAATACGGGATATACCGACATCCATTCTGTCTGTGCCATTTCAATGTTTGATACAGGAGATAATCGTAGTGTACAGTAGTGATGAACAGGGGTATGAGGTCAAATCAAATGTCGTCTGAATTAGAAACACAAGAGTTGTCCTTGTCTGTGTTGGTACCAGTGTCTTCCAATTCTTCTACTAGGTCGCCAATGATTGTAAGGCGTTCCGCTTTGCCCTCTACCTTTTTGCGCTCGAACAGCCAAGGGCAATCTAGTGATTCGCATCTGACAGGCTCCCCGGGGGCAGTTCCGCAACAAGAGCTACAAATTAATTGTACATCTCTCAGTCGGTCTTCTGCCACTCGAAGTCGGGATAGAAGTCCGGAAATGGTCGTTATAGGATCAGCGCGACAATCATCGCACAAGCCTGAAGTATCACTCAGCAAGGCGCACTTGATGAACACGCGATGGTTACCTTCCAACGTCAGTGCTCTACAGTTGATACAATGCGAACTCAGAAAATGTTCTTCAATCTTGAACGCGTTAGTTGCGGCGGTGTATTTCTTGACTCTCCTCGGTGACAGGGAGATTGGGTCTAGTGGCTGGTCTGCACGCAGCGCTTTCGGCATGTCATCGTACCAGCTCCTGACGTCAGCACCAACTAGATTGAATATTCGCTCGAGAGGAGGAATCAGTACTCGAGAAATATAGTACACCGCGTCCAGCTGTTTTTGACTAATCCAGATAAGCCAAACTGTCATCGCGAGATAGAACGATGTACCTGTTGTCAATAAGCTCGCCAGGAGAGACAGCCCTGTCTACCAGCCTGGTATCTGGGTCACCGCGCATGATAACATATGGTACACGTTCCCCATATTGCGGCTCGTCCATGGGGTCATTGGTCGTGCGTCGTGCGGCGACAGTGACTCCTGGGGGTGGTGGAACTTTATCACTGATGACCGAATCAATGTGTGGGCAGCAATCAGCCAATGGGACACACACCTATACGTCCCCATCTTCACCTCTTTAGCGAATATAAAGTCGTGAGGTGAAACTCTATTCTCCAAGATTCGGGTCCAAGATTCATAACAGTATTTTTTGACTTTACTGAGATCCTGCGTGCGAAATAAAATTCTAGCATCTATCAGCAAAGTATTACGGGATTTTTTAAAGCATAATACTTGAGGCAAGTCTctgtcatcttctgctgaGCGGGAATTCCATCTCGACGGACAGTTTCAATGCCCTTGGCATCGAATGTCGGCTCACTGTCATCTGGACTTTCGAACTTGAATCCAACATATCGTTTCTTCGCCATCAGCACACACGGAAGGTATACCTAATTACAACTATAAGGTCTGCGCCACATAGATAAATGTCGACATTATTCACCTTCTCAAACTTAAGCTTTACTGGTGCAGGATTCATGGATGTGACCGTCTCAGCCATATCTTGACCAATGCGGAAGGCTTGCTCCTTGGTCTTCCCACGAAGGTAAATAAAAAGTGAATCTGTATCACCGTACACAACCTTCGCCCCCCATTTCTTCGTTGAATTGATGACGCGAATGGCCTTGATTTAGAATGTGTGTCTCAGATTCCAAACATCAGTGGCACACAGATTTGCGTTACCTTTTCCAACGTCTCGCGACCACTCTGAACAATACTGTCAGCAATTTCAACCGCCGGCATCCGCCCAGAGAATGTAGCACTGGTATATCCGTATGTGACATTGGCAATGAACTTCAGGCCGAGCTGACGAGCATCCAGAATTCGTCTGAGTGCCTATGAGACATTATTATACTCATGACCAGATGCATGCGATTTGGAGCACACCTTATCGTCTTTGGCCCCCTTCATTGCTTGTTTGACCATCACCCGCGTATCCAATAACTCAGTCAACATCCTTCCTAATAGTCCTTTGCGTACGTCTTGATTAACATACACCATCCCGTTAGGTGCGACTGCAACCATGAGGCTTTGGTTTTTTGTATTTGTGCAGCATCTCGATGAGACTCACCGTGCATGTGCTCTTGTAGTGTTTCCAATAGCCCTGCAGGCTGATGTAAATCCGTTACGCCGAATTTGTTTTGTCCTTTGAAATCAGTGACACGTCCAAGACACGTAGAATAACAATAATTATATGCGATCATAACGGAGGGATACAATGATTGAAAGTCGAGTACGACAAGAGGACTGTTATAAAAGGCGGATAGAGGTTCCATGATAAGTGGCATACATTCTGCTGCGTTCTGTTTTCCGACCTTCAACGGTCATTAGCTTTCTGCAGGAGAAAACAGCGGAATTACTCACATCTTGCTTACTGGGGGATAGTAGCACAAAACTCTCTGGTTTAG\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/main_result01.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/main_result01.txt Fri Oct 18 11:50:31 2024 +0000 |
| b |
| @@ -0,0 +1,11 @@ +sequence_id class_fst_stage class_snd_stage +plastid_NC_026299.1_0_15000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_15000_30000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_30000_45000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_45000_60000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_60000_75000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_75000_90000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_90000_105000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_105000_120000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_120000_135000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_135000_150000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/main_result02.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/main_result02.txt Fri Oct 18 11:50:31 2024 +0000 |
| b |
| @@ -0,0 +1,51 @@ +sequence_id class_fst_stage class_snd_stage +archea_HG425166.1_0_15000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_15000_30000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_30000_45000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_45000_60000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_60000_75000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_75000_90000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_90000_105000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_105000_120000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_120000_135000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +archea_HG425166.1_135000_150000 HG425166.1 Methanobacterium sp. MB1 complete sequence archaea n/a +bacteria_AE015924.1_0_15000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_15000_30000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_30000_45000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_45000_60000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_60000_75000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_75000_90000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_90000_105000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_105000_120000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_120000_135000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +bacteria_AE015924.1_135000_150000 AE015924.1 Porphyromonas gingivalis W83, complete genome bacteria n/a +eukarya_NW_012132931.1_0_15000 NW_012132931.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold8033, whole genome shotgun sequence eukarya n/a +eukarya_NW_012132937.1_0_15000 NW_012132937.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold8623, whole genome shotgun sequence eukarya n/a +eukarya_NW_012132972.1_0_15000 NW_012132972.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold11742, whole genome shotgun sequence eukarya n/a +eukarya_NW_012132977.1_0_15000 NW_012132977.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold12580, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133002.1_0_15000 NW_012133002.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold15615, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133036.1_0_15000 NW_012133036.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold26232, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133063.1_0_15000 NW_012133063.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold33822, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133067.1_0_15000 NW_012133067.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold36096, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133074.1_0_15000 NW_012133074.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold38051, whole genome shotgun sequence eukarya n/a +eukarya_NW_012133082.1_0_15000 NW_012133082.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold39632, whole genome shotgun sequence eukarya n/a +mitochondria_NC_013604.1_0_15000 NC_013604.1 Acraea issoria mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_014887.1_0_15000 NC_014887.1 Acrida cinerea mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_015799.1_0_15000 NC_015799.1 Abidama producta mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_015842.1_0_15000 NC_015842.1 Agriosphodrus dohrni mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_016432.1_0_15000 NC_016432.1 Alloeorhynchus bakeri mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_018095.1_0_15000 NC_018095.1 Ahamus yunnanensis mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_018133.1_0_15000 NC_018133.1 Actias selene mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_018542.1_0_15000 NC_018542.1 Alulatettix yunnanensis mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_018754.1_0_15000 NC_018754.1 Acleris fimbriana mitochondrion, complete genome organelle mitochondrion +mitochondria_NC_021396.1_0_15000 NC_021396.1 Adoxophyes orana mitochondrion, complete genome organelle mitochondrion +plastid_NC_026299.1_0_15000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_15000_30000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_30000_45000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_45000_60000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_60000_75000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_75000_90000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_90000_105000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_105000_120000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_120000_135000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid +plastid_NC_026299.1_135000_150000 NC_026299.1 Acorus gramineus plastid, complete genome organelle plastid |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/main_result03.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/main_result03.txt Fri Oct 18 11:50:31 2024 +0000 |
| b |
| @@ -0,0 +1,11 @@ +sequence_id class_fst_stage class_snd_stage org bac arc euk unk1 pla unk2 mit +eukarya_NW_012132931.1_0_15000 NW_012132931.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold8033, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012132937.1_0_15000 NW_012132937.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold8623, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012132972.1_0_15000 NW_012132972.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold11742, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012132977.1_0_15000 NW_012132977.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold12580, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133002.1_0_15000 NW_012133002.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold15615, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133036.1_0_15000 NW_012133036.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold26232, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133063.1_0_15000 NW_012133063.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold33822, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133067.1_0_15000 NW_012133067.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold36096, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133074.1_0_15000 NW_012133074.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold38051, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a +eukarya_NW_012133082.1_0_15000 NW_012133082.1 Fibroporia radiculosa TFFH 294 genomic supercontigs, scaffold39632, whole genome shotgun sequence eukarya n/a 0.000000 0.000000 0.000000 1.000000 0.000000 n/a n/a n/a |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/mitplas1.fasta --- a/test-data/mitplas1.fasta Thu May 30 11:10:39 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,7279 +0,0 @@\n->mitochondria_NC_013604.1_0_15000 NC_013604.1 Acraea issoria mitochondrion, complete genome\n-TTAAAAATAAGCTAAATTAAGCTTTTGGGTTCATACCCCAAATATAAAGGAAACCCCTTT\n-TTTTTAAAAATAAAGTGCCTGATTAAAAGGATTATTCTGATAGAATAAATTATGTAATTT\n-TCTTACCTTTATTATATTTTATAGAATTAAACTATATCTAATAACTTCAAAAATTATTGT\n-GCATCTTACACTAAAATATAATTACCAAAATATGAATAAATTTCATTTTAGAATTATAAT\n-TCTTATTTTTAATTTTATACACAAATAATTCAAATAAAATATTTTTTTTATTTATTTTAT\n-TTTTTAGAACAATAATTTCTATTTCAGCTAATTCATGATTAGGATGTTGAATTGGACTAG\n-AAATTAATTTATTAAGATTTATCCCTCTAATATCTTCCCCCCTAAATTTACTTAATTCTG\n-AAGCATCATTAAAATACTTTTTAACCCAATCAATTGCTTCAATTAATTTCCTATTTTCTA\n-TTTTATTAAATTTATTATTATTTAAATTTTTTTTTTATGATAATTTTTTATCAATTTTAA\n-TTAATTCAACTTTATTTATAAAAATAGGGTCAGTACCTTTTCATTTTTGATTCCCTAATA\n-TTATAGAAGGATTATCATGATTTAATAATTTTATTTTAATAACCTGACAAAAAATTTCCC\n-CTATAATTTTACTTTCTTACTACATAAATTTTAATTATTCAATTTTTATTATAATCTTAA\n-ATGTACTCATTGGGACTATTGGAAGATTTAATCAATCTTCTTTACGTAAACTTATAGCCT\n-TTTCTTCAATTAATAATTTAGGATGAATAATTTCAGCTTTATTAATTAGAGAAAATTTAT\n-GATTAACTTATTTCTTATTTTACTCCATATTCCTATTTATTTCTTGTTTTATTTTTTATA\n-TTACTAATATATTTTATATTAATCAATTATTTAATTTTAATTTTAATTATTTTATTAAAT\n-TTACAATTATATTAAATTTTCTTTCTTTAGGGGGATTACCTCCATTCTTAGGATTTTTCC\n-CTAAATGATTAATTATTAATTATTTAATTTTAAATAAATTTTATATTGTTACATTTATTT\n-TTATTATATGTAGTCTAATTATATTATTTGTATATATCCGAATTATCTATTCTTCATTCA\n-TATTTTATTTTATTAAATTGAAATGGTTTAACCTATTTATAAAAAATAATCTAATTATTT\n-TTATTTATTTTTTTAATAGAATTTCATTATTAGGTATAATTTTAAGAACTTTATTTTTTT\n-TTTAATATTAAGGTTTTAAGTTAATTTAAACTAATAATCTTCAAAATTATATATAAAGAA\n-ATTCTTTAAGCCTTAATAATATTTATTATACCTTAAAATTTGCAATTTTAAATCATATTT\n-GAATATAAGACTTTAATAAAAGAGATATTTCTCGTTAATAAATTTACAATTTATCGCTTA\n-TTAACTCAGCCATTTTATTGCGAAAATGACTTTTTTCTACTAATCATAAAGATATTGGAA\n-CTTTATATTTTATTTTTGGAATTTGATCAGGAATAGTAGGAACATCTTTAAGATTATTAA\n-TTCGTACAGAATTAGGAACCCCAGGATCTTTAATTGGAGATGACCAAATTTATAATACTA\n-TTGTAACTGCTCATGCTTTCATTATAATTTTTTTTATAGTTATACCAATTATAATTGGAG\n-GATTTGGAAACTGATTAGTCCCATTAATATTAGGAGCCCCAGATATAGCTTTCCCTCGTA\n-TAAATAATATAAGTTTTTGACTTCTTCCCCCCTCATTAATTTTATTAATTTCTAGAAGAA\n-TTGTTGAAAATGGAGTAGGAACAGGATGAACAGTTTACCCCCCCCTTTCCTCTAATATTG\n-CCCATAGAGGTTCTTCAGTAGATTTAGCTATTTTTTCTTTACATTTAGCTGGTATTTCTT\n-CTATTTTAGGAGCAATTAACTTTATTACAACAATTATTAATATACGAATTAATAATTTAT\n-CTTTTGATCAAATACCTTTATTTGTTTGAGCAGTAGGTATTACAGCCCTTTTACTTCTTT\n-TATCCCTACCTGTATTAGCAGGGGCTATTACTATATTATTAACAGATCGAAATTTAAATA\n-CTTCCTTTTTTGATCCTGCTGGTGGAGGAGACCCAATTTTATACCAACATTTATTTTGAT\n-TTTTTGGACATCCTGAAGTTTATATTTTAATCCTACCTGGATTTGGAATAATTTCACATA\n-TTATTTCCCAAGAAAGAGGAAAAAAAGAAACTTTTGGAGCTTTAGGAATAATTTATGCTA\n-TAATAGCAATTGGATTACTTGGATTTATTGTTTGAGCTCATCATATATTTACAGTAGGAA\n-TAGATATTGATACTCGAGCTTATTTTACATCAGCAACAATAATTATTGCAGTCCCTACAG\n-GAATTAAAATTTTTAGTTGATTAGCAACTTTACATGGGACTCAAATTAACTATAGCCCCT\n-CAATATTATGAAGATTAGGATTTATTTTCCTATTCACAATTGGGGGATTAACCGGAGTAA\n-TTTTAGCTAACTCTTCAATTGACATTACCCTACATGATACATATTATGTTGTTGCCCATT\n-TTCATTATGTTTTATCTATAGGAGCTGTATTTGCTATTTTTGGAGGATTCATTCATTGAT\n-ACCCATTATTTACAGGATTAATACTTAACCCTTATTTATTAAAAATTCAATTTATTTCCA\n-TATTCATTGGAGTAAATTTAACATTTTTCCCTCAACATTTTTTAGGACTCGCAGGAATAC\n-CTCGACGATACTCCGACTATCCTGATAGATTTATATCATGAAATATTATTTCTTCTTTTG\n-GGTCTTATATTTCATTATTATCAATAATTTTAATTATTATCATTATTTGAGAATCAATAA\n-TTAATCAACGAATTATTTTATTTTCCTTAAATATACCATCTTCTATTGAATGATATCAAA\n-ATTTACCCCCAGCTGAACATTCTTACAATGAATTACCTATTTTAAGTAACTTCTAATATG\n-ACAGATTATATGTAATGGATTTAAACCCCATTTATAAAGGTAAATCCTTTTTTTAGAAAT\n-GGCTACTTGATCTAATTTTAATTATCAAAATAGAACTTCCCCTTTAATAGAACAAATTAT\n-TTTTTTTCACGATCATACTTTAATTATTTTAATTATAATTACAATTTTAGTTTCTTATTT\n-AATAATTAATTTATTTTTTAATAAATATATTAATCGATTTCTTTTAGAAGAACAAATAAT\n-TGAATTAATTTGAACTATTTTACCAGCTATTACTTTAATTTTTATTGCTCTTCCTTCTTT\n-ACGATTACTTTATCTCTTAGATGAACTTAATAACCCATTAATTACTTTAAAGTCAATTGG\n-GCATCAATGATATTGAAGTTATGAATACTCTGATTTTAATAATATTGAATTTGACTCTTA\n-CATAATTCAATCTAATGAAAATTTAAATAATTTTCGTCTTCTTGATGTTGATAATCGAAT\n-TATTTTACCTATAAAAAATCAAATTCGAATTTTAGTAACAGCTACTGATGTAATTCATTC\n-ATGAACAATCCCCTCATTAGGAGTAAAAATTGATGCAAACCCAGGACGTCTTAATCAAAC\n-TAGATTTTTTATAAATCAACCAGGAATTTTTTATGGTCAATGTTCTGAAATTTGTGGAGC\n-TAATCATAGATTTATACCTATTGTTGTAGAAAGTATCCCTATTAAGAATTTTATTAATTG\n-AATTAATAATTACTCATTAGATGACTGAAAGCAAGTAATGGT'..b'ATAATCGAGATCATTCTTTGATACAGGATG\n-ACTATGAGTCAGACTCCATAGAATTTGATCAATCCTTTTTTCGGTCGTTAAGGTGGAGAA\n-CTGAACTGCCAAGTCTCTTTCGTCCTCATCAATCAAATCATTGATCGTAACCCAGGATTC\n-TACTCTGTCTTCAATCCAATCACTGTTCACGTTTTTTCTTTCTCTTATCAATGAATAGAT\n-CTCTTTACTTGTACGACTTAGATGTCTCGTATTTCTCGAAAAAGTGATGGTATTTGATAT\n-GATACTTATGAGATCGATATTCCAATCTAATTGTTCCAGAGCAAAGAGATTATTTAACAA\n-GAAAGAATTCAGTTCATATTCATATTCAGATTCAGATTTAGATGTAGATGTAGGATACCT\n-ATACAGAAGTTTTTGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTC\n-TAACTCTGTCTGTAACTCATTAGAGACTCGGGAAACAAAGAGAAGATGCGTACGAACGAG\n-ATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGTTGA\n-TCTCAGATGTGTCAATATCATTGAAACGGGTGACTCATTATTTCGATGAATCATTTCTTC\n-GGACAGAAGAAGATTCTGTAAACACTTACTCGAAATCTCACTTATCAGATTCCATTGTGG\n-AAGAATCGTCCACCATTTTTTAATTAGCCGTGATATATCTGATCTATGCATAATAGAATT\n-CAAAATGGATACCGATTTTGGACTACTACTTAGTATCGACAATCGGTCTGAAAAAATATC\n-TAAAAGGACGGAAGTTAGATATTTGCACCCTGTCGAAGTAAGGAACCATGGCATATATGT\n-TTGGAACAGATTCCATTTTGAAAAAGCACTATCCCGTTGTTGAGAGGTTCTATACATCTG\n-CCCTTTCTCAACGCATTTCTTTAGATAAAGACTCCGTTTTTTCCTCAGATAAAGACTCCG\n-TTTTTTCCTCAGATAAAGACTCTGTTTTTTCCTCTTTACGTATGGTAAATTTTTCTCAGA\n-ACATGGAGTGTGAATCAAACCAATGTTTGAATTGAAACTGAGATACTGATGCAAGTTCTT\n-CCCTTCTGAATCGGATAGATTCATATCTGAAAGAGGCTGACAATAAGTTCTTTCAAAATT\n-GACTATTTGTTCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAAGAGCTCT\n-ACGAACGAATGGATCGGGTCGAATTGGAAAACGGAAAGATTTGTACAAGTTATACGTTTC\n-GTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTCAGATACCTGTGAATAAATCGG\n-TAAAAGATGTTTTTTTTTACCGACGCATAAAGAAAATATTTTGTTGCGAATGAACAAGAT\n-ATTGAGGAATTGTCCATATGTACGATCATAATTATTGATACGGGTCTTTTCCACATAAAA\n-GGGGAATCTTTTGTTACAATAGAACCAGAAGTGATGTGGATTATTCAAGAATCGAAGTTG\n-ATTTGCTTTATAAAAAGACGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAG\n-CCAATTGTCTCGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTAGCAAAGGATTT\n-GCTGCGATTCTTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAA\n-AAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATCTTTGGGAAGTATCATGATC\n-AGGTTTCAATTTATGCAAATGAATGATTTGAACACCTATTGATTTTAACAACTGATTGCA\n-GAGCGGCTCATTCGGACCTTTCAATTCATAGATGTGGATCTCGGACCTATGAATGGGGCT\n-ATTCCCGATACTCACAAAGAACAAAGGAAGTGACTTGGACAAAAAGAAACGAAGTGGCTT\n-GGACAAAAAGAGAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTGTTT\n-GTCGATAGCCTCGGACCAATTAATCGAATATTGATTAATACGTAATTGATCAAACACTAC\n-TTGAAAACGGTTCTTCTGTTCAGAAACGAAATGTTCCAAATGTTCCTGGAAATTCTTACT\n-CCCGTTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCGGTTCG\n-AGAAATAAGAGGATCAAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTT\n-GATCGTATATTTCATTATAGTTATATGATTCAGAGTATCATTTCCTATTTGATCCCTTTG\n-AATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATT\n-TCTTATGTACCCATAGGCGCTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTG\n-ATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTCTTTTGAGTTTTGAATCTTC\n-CAAATCATTCCCGCAGTGGATCCAGACCGGTTTTTTTCTGATGCTTCGATAAAAAAAGGC\n-ATTCTCTTCATAAAAAAGAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCTT\n-TGTTTTTTCCTTTCCATTCACTAATTTTTTTTGATCTAATCCGCAGGAATCAATCGAAAA\n-GGCAAATCCCCTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATAGATCTGC\n-CATTTCTTGAAATCTCTCTTCTGATTCAAAATCGTGGTGTAATGTGTACCCCCCCTTGTT\n-CCGATCGTGGAATAGATGAAATAAATCAAAAAATGGATTTTTGTTCAAGAATGAAATCTT\n-ATTGGAACTGTCCATATCTGGTTCATCCTTCGGAACCATATCACATCCCGGATCTGATGA\n-AATAGGATGAATTGAGACGGTATTTTGTAAATAAGTAATTATCTTGAATATATCAACCAT\n-TTCTTTATTTTCTGATCGCCGGGAAGAGACAAAAGAAACATCTTGTTGTTTCTTCAACCA\n-TTTCTGATCTCTAGTGGACCTGTCAGTAGGATTCGAACCCATATGAAGTTCTGACCATCT\n-GTCAGAGAAAAAAGAACGAATTGATCTTGTAGGATTCCCAAGAAATTCGTCGATTTCTTC\n-CGGAAGCCGATGAATAATCATCTGCTTCTCATGTTCGGGGAATAGCGGGGACATTGGGGA\n-AGATCCAGAAAGGCATTTCGGGAATCGATCTGATTCTATCTCTGTTCGTTCCGTTTGAAG\n-AAAGGAAGGATCCCCAGGAATCGATCTTCCTTTTAGTTGCGGAATCTCTGTTTGATCGAT\n-CAATGTGTGATATTCTGAATCCTCCTTACTAATGGAATCGAAGTGATCTCTGGATTGATC\n-AGAAGATCCTTTCGATTGGCTAAAATCCGTTACTTGAACGAAAATAGATCTTGTGGAATC\n-ATATTGAATATTTGACGATACATTCTGTACCTTGCTAAAAAACCGATCCTTGCGGATCGG\n-ATCATCCGTATAGGATAAAAAAAGAAACTCCAGATATTTTAGATCTTTCTCTTTGGATGA\n-GATCTCAATTCCAGCTACGGTTTTATTAGATATCTTACAACTAGAATCCCTCTTTTTTCC\n-GATCCGGTTCCTCCACCACCGCGAACCCCGGTTAGATTCGGGCATGATACGCTTTTGATT\n-TATTTTATTTATTGGGAAAAGCCAAAGACTCTCTTTCGGATCCATGAAACAACTCTCAGA\n-GGTCTTTTTCCCTTTTGGAAGATACAGGAGCAAAACAATCAACCTATTGATATCGGAAGA\n-CCAAAAGGATTCTTCCAATGTCTCATTTCCGGGTCCAATGGAATTCATAGGTATAGGAAG\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e test-data/pla --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pla Fri Oct 18 11:50:31 2024 +0000 |
| b |
| b'@@ -0,0 +1,20 @@\n+>plastid_NC_026299.1_0_15000 NC_026299.1 Acorus gramineus plastid, complete genome\n+GAGCTTATATGAGTGAAACACTAAAAAAAGAGCTTATATGAGTGAAACACTAATCAAATGAACCGAATGGAGCAATACCAAATCTCTTGATAGAACAAGATATTGCGTATTGCTCCTTCAACGACTCATATACACTACACTTACACTACACTAAGACCGAAGTCTTATCCATTTGTAGAAGGTGCTTCAACAGAAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATAACACGACCTTGACTGTCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAGGGAACGGGAATTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCGTGAGCAGCGACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCAGTAGTTTCCCTGATTAAACTGGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAATGGATGCATAAGGATGTTGTGTTCGGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAGAGGCATACCATCAGAGAAGCTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCGACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACGGATGCTGCTTCCCAAATTGGGTAAAAGTGCAAACCTATAGCTGCAGATGTAGGAATAATGGCACCAGAAATAATGTTGTTTCCATAAAGTAAAGACCCGGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATTAAAACACCGAACCATCCAATGTAAAGGCGGTTTTCGGTGCTGGTTATCCAGTTACAGAAGCGACCCCATAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTTAATTATCAAGGACTCCCAAGCGCATGAACTATCTATAAATAGATATAGATAATGGAAGGCTTGTTATTTAACAGTATAACACGACTCATATGTCCATGTCAACCAACATCGACAGGTAGATTTATCTAGCGATCTATATAAATAATAGATCTTTCTTTTTCGATTTTACGTATGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAATTTCCTTTTGCAATAGGCTAAAAGGATCCCTCCCCAAATCGTGCTTGCATTTTTCATTGCACACGACTTTCCCTATGTATACATCTAAAACTTAGTTTCCTGGAAGGAAGAAACTTGAATACTCAGTTGATTCAACCACTACTCTATAAGCATTTCAGAATGCAAATACATGAGAATTTTTGTCTCTTCATCATTTATTTATAGATCGTTTCTATTCCATTTATTAGAAAAGTCCCATGACAAATCATGAATTATTCACCAGGTCATTGATACGTATAATATCCAAATACCAAATACGTTCTCCTTTATGGACCCTGGGTGAAGGTGAACGAAGGGAAGGGAAGATCAAAGAAAGAACTTGTTCTTTATCCGTAAAGAATTCTTCTAAGAATTCTGAACCTAATCGTTTGAAAAAAGCGCGCACTGTACTTTTATGTTTACGGGCCAAAGTTCTCGCACACGAAAGGCGAAGTATATACTTTACTCGATACAAACTCTGTTTTTTTGAGGATCCACTGTGATAATGAGAAAGATTTCTACATATTCGTCCAAATCGATCAATAATATCAGCATCTGACAAATCAGCCCAGACCGGCTTACTAACAGGATGCCCTGATACGTTACAAAACTTAGCTTTAACCAATGATCCGATTAGAGGAATAATTGGGACTATAGTATCGAATTTTTTAGTAGGAGTATCCATCAGAAATGAACTCTCTAGCATTTGACTCCTTACCGTCGAAAAATTGATTCGTACACTTGAAAGATAGCCCATAAAATAGAAAGAACGATTTGATAATTGGTTTATATGAATCCTATGCGGTTGAGACCAAAAGTAAAAACGACATTGCCAGAAATTTAGAAGGTGATATTTCCATTTCTTCATCAGAAAATGAGTCCCCTTTGAAGCCAGAATTGATTTTCCTTTATATCGGATATAATGGATGAAAGGATCTTTGAACAAAGATAAGGCCTTTTGAAAATTCTTCCTACGCACTACTACAATATGCTCTATTTTTCCATAGAAATGTGTTCGCTCAACAAAGGTTCCAAAAGATGTTGATCGTAAATAAAAGGATTGTTTACGGAGAAAGACTAATGCGGATTCACACTCAAATACATAAGAATTATATAAGAACAAGAAGAGTCTTTGATTCCCCTTTGAAAAAAGAAAAGAAATGGATTTCTTTGGAGTAATGAGACTATTCCAATTATGAAACTCATGGAGAAAGAACCGCAATAAATGTAAAGACGGAACATCTTGTATCCAGCCTTGAAGAACTTGAACCAGGATTTCGAGATGGATGGGATAGGGTATTAATATATCTGATACATGATTTAAATGTGATAATTTGTCTTCTAAAAAGGGAAATGTTGCATGAATAGATCGTAAATTCTGAATTTTTGGTATTTTTGCTTTTTTTTCTTCAACGGAAGATAAAAATATTATCGAGAATGGAATTTCCATAATGACTGAAAAACCCTCTAATATCGTTTGATAATAAAAATTCTTGTTTTGCCGAACTAATCGATTTCGGTTAGAATCATTAACCAAATTACTCAAAGAATTCTGTTGATACATTTGAGTAATTAAACGTTTTACAATTATTAAACTAAATTTATTATCATAAACGAAATTTTCCGAGGATTCGTAAAAAATCAATCCATTTAAAACATGATTATGAGCAAGTGCGTAGATGTACTCCTGAAAGAGAAGTGGATATAGGAAGTATTGTTGACGAGACCCATCTTTTTCGAAATAGACTTTGAATTCTTCCATTTGAAATTTTATTTGATTGAACTAAATGCAGGAAGAATTTCTTGGATTATCAAATGATACATAGTGCGATATGGTCAGAACGCGGTATAGAAAAAAACGAATACCACGGAGACAGGGAGTCCAATCAACAGACCTTCTTCCTCTCTTTTTGCATTCAACCAGTTTGTGTTCGTTATAGTTACACGAGATGGTCAGAAATCTTTTATTTTTGCAACCCAATCGCTCTTTTGACTTTGGAAAAATTTATCTCTATCAGTATACCGGTTCTCTTACACATTCGTCTCCACTCTATAATATGGAATAGTTAGGATTCAAAAAGGAATCGATGATCCACTCACAAGAGAACCCTTTCCCGCATCAGGCACTAATTTATTTTTAACGTCTAATTAGATTGGGTAATCATTCGAATTAAGAACATAAGCTCGTTTCTTTTTCTTTCCTTAGAATTGGAGCCACAAGGCTCTATCCATTTATTCACTCGACCCAACTCCAACCGCGAATTGATTTTGTCATGTTCCAAAAATCAAACAAAACGATTTTTATATCGATCCGGTAAGGATGGAGTATTCTCAGAGTTCTTCATTAATACGACATGCTATTTTTTCCCTTCATTCCCTTTAAGGATCAGTCGTGGTCTTATTAAACTCTACC'..b'CGATAATTAGCAAGGAATATCCGTTTTTCTGCTAAACAGGATCCATTGAACTCATAATTCATTAGATCCTTTTTATGAATGTCAACTAAGTATCGTAAGGAAATTAATCCCGGTTGTTCAATCATTTGATAATCGAGATCATTCTTTGATACAGGATGACTATGAGTCAGACTCCATAGAATTTGATCAATCCTTTTTTCGGTCGTTAAGGTGGAGAACTGAACTGCCAAGTCTCTTTCGTCCTCATCAATCAAATCATTGATCGTAACCCAGGATTCTACTCTGTCTTCAATCCAATCACTGTTCACGTTTTTTCTTTCTCTTATCAATGAATAGATCTCTTTACTTGTACGACTTAGATGTCTCGTATTTCTCGAAAAAGTGATGGTATTTGATATGATACTTATGAGATCGATATTCCAATCTAATTGTTCCAGAGCAAAGAGATTATTTAACAAGAAAGAATTCAGTTCATATTCATATTCAGATTCAGATTTAGATGTAGATGTAGGATACCTATACAGAAGTTTTTGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTCTAACTCTGTCTGTAACTCATTAGAGACTCGGGAAACAAAGAGAAGATGCGTACGAACGAGATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGTTGATCTCAGATGTGTCAATATCATTGAAACGGGTGACTCATTATTTCGATGAATCATTTCTTCGGACAGAAGAAGATTCTGTAAACACTTACTCGAAATCTCACTTATCAGATTCCATTGTGGAAGAATCGTCCACCATTTTTTAATTAGCCGTGATATATCTGATCTATGCATAATAGAATTCAAAATGGATACCGATTTTGGACTACTACTTAGTATCGACAATCGGTCTGAAAAAATATCTAAAAGGACGGAAGTTAGATATTTGCACCCTGTCGAAGTAAGGAACCATGGCATATATGTTTGGAACAGATTCCATTTTGAAAAAGCACTATCCCGTTGTTGAGAGGTTCTATACATCTGCCCTTTCTCAACGCATTTCTTTAGATAAAGACTCCGTTTTTTCCTCAGATAAAGACTCCGTTTTTTCCTCAGATAAAGACTCTGTTTTTTCCTCTTTACGTATGGTAAATTTTTCTCAGAACATGGAGTGTGAATCAAACCAATGTTTGAATTGAAACTGAGATACTGATGCAAGTTCTTCCCTTCTGAATCGGATAGATTCATATCTGAAAGAGGCTGACAATAAGTTCTTTCAAAATTGACTATTTGTTCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAAGAGCTCTACGAACGAATGGATCGGGTCGAATTGGAAAACGGAAAGATTTGTACAAGTTATACGTTTCGTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTCAGATACCTGTGAATAAATCGGTAAAAGATGTTTTTTTTTACCGACGCATAAAGAAAATATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATATGTACGATCATAATTATTGATACGGGTCTTTTCCACATAAAAGGGGAATCTTTTGTTACAATAGAACCAGAAGTGATGTGGATTATTCAAGAATCGAAGTTGATTTGCTTTATAAAAAGACGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTCGATCGTGGGATATCATTGAGAAATAGGAATCCGTGTTAGCAAAGGATTTGCTGCGATTCTTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATCTTTGGGAAGTATCATGATCAGGTTTCAATTTATGCAAATGAATGATTTGAACACCTATTGATTTTAACAACTGATTGCAGAGCGGCTCATTCGGACCTTTCAATTCATAGATGTGGATCTCGGACCTATGAATGGGGCTATTCCCGATACTCACAAAGAACAAAGGAAGTGACTTGGACAAAAAGAAACGAAGTGGCTTGGACAAAAAGAGAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTGTTTGTCGATAGCCTCGGACCAATTAATCGAATATTGATTAATACGTAATTGATCAAACACTACTTGAAAACGGTTCTTCTGTTCAGAAACGAAATGTTCCAAATGTTCCTGGAAATTCTTACTCCCGTTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATAAGAGGATCAAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTTGATCGTATATTTCATTATAGTTATATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGCGCTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTCTTTTGAGTTTTGAATCTTCCAAATCATTCCCGCAGTGGATCCAGACCGGTTTTTTTCTGATGCTTCGATAAAAAAAGGCATTCTCTTCATAAAAAAGAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCTTTGTTTTTTCCTTTCCATTCACTAATTTTTTTTGATCTAATCCGCAGGAATCAATCGAAAAGGCAAATCCCCTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATTCAAAATCGTGGTGTAATGTGTACCCCCCCTTGTTCCGATCGTGGAATAGATGAAATAAATCAAAAAATGGATTTTTGTTCAAGAATGAAATCTTATTGGAACTGTCCATATCTGGTTCATCCTTCGGAACCATATCACATCCCGGATCTGATGAAATAGGATGAATTGAGACGGTATTTTGTAAATAAGTAATTATCTTGAATATATCAACCATTTCTTTATTTTCTGATCGCCGGGAAGAGACAAAAGAAACATCTTGTTGTTTCTTCAACCATTTCTGATCTCTAGTGGACCTGTCAGTAGGATTCGAACCCATATGAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATTGATCTTGTAGGATTCCCAAGAAATTCGTCGATTTCTTCCGGAAGCCGATGAATAATCATCTGCTTCTCATGTTCGGGGAATAGCGGGGACATTGGGGAAGATCCAGAAAGGCATTTCGGGAATCGATCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATCCCCAGGAATCGATCTTCCTTTTAGTTGCGGAATCTCTGTTTGATCGATCAATGTGTGATATTCTGAATCCTCCTTACTAATGGAATCGAAGTGATCTCTGGATTGATCAGAAGATCCTTTCGATTGGCTAAAATCCGTTACTTGAACGAAAATAGATCTTGTGGAATCATATTGAATATTTGACGATACATTCTGTACCTTGCTAAAAAACCGATCCTTGCGGATCGGATCATCCGTATAGGATAAAAAAAGAAACTCCAGATATTTTAGATCTTTCTCTTTGGATGAGATCTCAATTCCAGCTACGGTTTTATTAGATATCTTACAACTAGAATCCCTCTTTTTTCCGATCCGGTTCCTCCACCACCGCGAACCCCGGTTAGATTCGGGCATGATACGCTTTTGATTTATTTTATTTATTGGGAAAAGCCAAAGACTCTCTTTCGGATCCATGAAACAACTCTCAGAGGTCTTTTTCCCTTTTGGAAGATACAGGAGCAAAACAATCAACCTATTGATATCGGAAGACCAAAAGGATTCTTCCAATGTCTCATTTCCGGGTCCAATGGAATTCATAGGTATAGGAAG\n' |
| b |
| diff -r 3f33a8ac8891 -r 66058890173e tiara.xml --- a/tiara.xml Thu May 30 11:10:39 2024 +0000 +++ b/tiara.xml Fri Oct 18 11:50:31 2024 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="tiara" name="tiara" version="@TOOL_VERSION@+galaxy0" profile="21.05"> +<tool id="tiara" name="tiara" version="@TOOL_VERSION@+galaxy1" profile="21.05"> <description>Deep-learning-based approach for identification of eukaryotic sequences in the metagenomic data </description> <macros> <import>macros.xml</import> @@ -6,17 +6,12 @@ <expand macro="biotools"/> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ - + mkdir ./results/ && tiara -t \${GALAXY_SLOTS:-4} -i '$input' - -o '$output' + -o ./results/main_result.txt - #if $taxonomy_filter - --tf #for $tf in $taxonomy_filter - $tf - #end for - #end if #if $probabilities --pr '$probabilities' #end if @@ -33,6 +28,15 @@ --k1 $advanced_options.advance.first_stage_kmer --k2 $advanced_options.advance.second_stage_kmer #end if + #if $taxonomy_filter + --tf #for $tf in $taxonomy_filter + $tf + #end for + #for $tf in $taxonomy_filter + && ls -l ./results/ + && mv ./results/${tf}*.dat ./results/${tf}.fasta + #end for + #end if ]]></command> <inputs> @@ -43,9 +47,6 @@ <option value="bac">bacteria</option> <option value="arc">archea</option> <option value="euk">eukarya</option> - <option value="unk">unknown</option> - <option value="pro">prokarya</option> - <option value="all">all</option> </param> <param argument="probabilities" type="boolean" truevalue="--pr" falsevalue="" checked="false" label="Add probabilities of individual classes for each sequence."/> <param argument="min_len" type="integer" value="3000" min="1000" optional="true" label="Minimum length of a sequence. Default: 3000 bp." help="Specify the desired minimum length in base pairs.Default value is 3000 bp and we do not recommend classifying sequences shorter than 1000 bp. "/> @@ -77,48 +78,28 @@ </section> </inputs> <outputs> - <data name="output" format="txt" label="${tool.name} on ${on_string}: sequence ID, classification results"/> + <collection name="output" type="list" label="${tool.name} on ${on_string}: classified sequences in txt and Fasta Output"> + <discover_datasets pattern="__name_and_ext__" ext="fasta,txt" directory="results" /> + </collection> </outputs> <tests> <test expect_num_outputs="1"> <param name="input" value="plast_fr.fasta.gz"/> <param name="taxonomy_filter" value="pla"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*sequence_id*"/> - <has_n_lines n="11" delta="5"/> - </assert_contents> - </output> - </test> - <test expect_num_outputs="1"> - <param name="input" value="mitplas1.fasta"/> - <param name="taxonomy_filter" value="pla,mit"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*sequence_id*"/> - <has_n_lines n="30" delta="5"/> - </assert_contents> - </output> + <output_collection name="output" type="list"> + <element name="main_result" file="main_result01.txt" ftype="txt"/> + <element name="pla" file="pla" ftype="fasta" /> + </output_collection> </test> <test expect_num_outputs="1"> <param name="input" value="sample_all.fasta"/> - <param name="taxonomy_filter" value="all"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*sequence_id*"/> - <has_n_lines n="51" delta="5"/> - </assert_contents> - </output> - </test> - <test expect_num_outputs="1"> - <param name="input" value="sample_all.fasta"/> - <param name="taxonomy_filter" value="euk,bac,arc,unk"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*sequence_id*"/> - <has_n_lines n="51" delta="5"/> - </assert_contents> - </output> + <param name="taxonomy_filter" value="euk,bac,arc"/> + <output_collection name="output" type="list"> + <element name="arc" file="arc" ftype="fasta" /> + <element name="bac" file="bac" ftype="fasta" /> + <element name="euk" file="euk" ftype="fasta" /> + <element name="main_result" file="main_result02.txt" ftype="txt" /> + </output_collection> </test> <test expect_num_outputs="1"> <param name="input" value="eukarya_fr.fasta"/> @@ -126,26 +107,11 @@ <param name="min_len" value="5000"/> <param name="cutoff_stage1" value="0.65"/> <param name="cutoff_stage2" value="0.60"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*sequence_id*"/> - <has_n_lines n="11" delta="5"/> - </assert_contents> - </output> - </test> - <test expect_num_outputs="1"> - <param name="input" value="bacteria_fr.fasta"/> - <param name="taxonomy_filter" value="bac"/> - <param name="min_len" value="5000"/> - <param name="cutoff_stage1" value="0.65"/> - <param name="cutoff_stage2" value="0.60"/> <param name="probabilities" value="true"/> - <output name="output" ftype="txt"> - <assert_contents> - <has_text_matching expression=".*bac*"/> - <has_n_lines n="11" delta="5"/> - </assert_contents> - </output> + <output_collection name="output" type="list"> + <element name="euk" file="euk" ftype="fasta" /> + <element name="main_result" file="main_result03.txt" ftype="txt" /> + </output_collection> </test> </tests> <help><![CDATA[ |