| Previous changeset 8:935de83b470b (2025-02-17) |
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Commit message:
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/Ensembl-REST commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb |
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modified:
get_genetree.xml |
| b |
| diff -r 935de83b470b -r 667fd2d7a350 get_genetree.xml --- a/get_genetree.xml Mon Feb 17 14:49:15 2025 +0000 +++ b/get_genetree.xml Mon Mar 10 23:26:15 2025 +0000 |
| b |
| @@ -115,10 +115,14 @@ <param name="species" value="Chicken" /> </conditional> <param name="input" value="ENSGALP00010009242" /> - <param name="output_format_selector" value="json" /> - <param name="sequence_selector" value="protein" /> - <param name="aligned" value="0" /> - <param name="cigar" value="0" /> + <conditional name="output_format"> + <param name="output_format_selector" value="json" /> + <conditional name="sequence"> + <param name="sequence_selector" value="protein" /> + <param name="aligned" value="0" /> + <param name="cigar" value="0" /> + </conditional> + </conditional> <output name="output" ftype="json"> <assert_contents> <has_text text="tree" /> @@ -134,8 +138,10 @@ <param name="species" value="Chicken" /> </conditional> <param name="input" value="ENSGALP00010009242" /> - <param name="output_format_selector" value="nh" /> - <param name="nh_format" value="simple" /> + <conditional name="output_format"> + <param name="output_format_selector" value="nh" /> + <param name="nh_format" value="simple" /> + </conditional> <output name="output" ftype="nhx"> <assert_contents> <has_text text="ENSGALP00010009242" /> @@ -148,10 +154,14 @@ <param name="input_type" value="gene_tree_id" /> </conditional> <param name="input" value="ENSGT00390000003602" /> - <param name="output_format_selector" value="json" /> - <param name="sequence_selector" value="protein" /> - <param name="aligned" value="0" /> - <param name="cigar" value="0" /> + <conditional name="output_format"> + <param name="output_format_selector" value="json" /> + <conditional name="sequence"> + <param name="sequence_selector" value="protein" /> + <param name="aligned" value="0" /> + <param name="cigar" value="0" /> + </conditional> + </conditional> <output name="output" ftype="json"> <assert_contents> <has_text text="tree" /> @@ -166,9 +176,13 @@ <param name="input_type" value="gene_tree_id" /> </conditional> <param name="input" value="ENSGT00390000003602" /> - <param name="output_format_selector" value="phyloxml" /> - <param name="sequence_selector" value="protein" /> - <param name="aligned" value="0" /> + <conditional name="output_format"> + <param name="output_format_selector" value="phyloxml" /> + <conditional name="sequence"> + <param name="sequence_selector" value="protein" /> + <param name="aligned" value="0" /> + </conditional> + </conditional> <output name="output" ftype="phyloxml"> <assert_contents> <has_text text="Euteleostomi" /> |