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test-data/ucsc.gtf |
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| diff -r 7b5725d3a8a5 -r 669f37f69acc test-data/ucsc.gtf --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ucsc.gtf Fri Feb 22 10:50:54 2019 -0500 |
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| b'@@ -0,0 +1,482421 @@\n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t15865\t15865\t824.000000\t+\t0\tgene_id "cg13869341"; transcript_id "cg13869341"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t18827\t18827\t565.000000\t+\t0\tgene_id "cg14008030"; transcript_id "cg14008030"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t29407\t29407\t115.000000\t+\t0\tgene_id "cg12045430"; transcript_id "cg12045430"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t29425\t29425\t244.000000\t+\t0\tgene_id "cg20826792"; transcript_id "cg20826792"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t29435\t29435\t55.000000\t+\t0\tgene_id "cg00381604"; transcript_id "cg00381604"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t68849\t68849\t212.000000\t+\t0\tgene_id "cg20253340"; transcript_id "cg20253340"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t69592\t69592\t88.000000\t-\t0\tgene_id "cg21870274"; transcript_id "cg21870274"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t91551\t91551\t307.000000\t-\t0\tgene_id "cg03130891"; transcript_id "cg03130891"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t135253\t135253\t582.000000\t-\t0\tgene_id "cg24335620"; transcript_id "cg24335620"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t449076\t449076\t795.000000\t+\t0\tgene_id "cg16162899"; transcript_id "cg16162899"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t530959\t530959\t561.000000\t+\t0\tgene_id "cg17149495"; transcript_id "cg17149495"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t533950\t533950\t886.000000\t+\t0\tgene_id "cg22802167"; transcript_id "cg22802167"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t534243\t534243\t474.000000\t-\t0\tgene_id "cg24669183"; transcript_id "cg24669183"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t542759\t542759\t37.000000\t-\t0\tgene_id "cg17308840"; transcript_id "cg17308840"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t546985\t546985\t840.000000\t-\t0\tgene_id "cg17866181"; transcript_id "cg17866181"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t565171\t565171\t174.000000\t-\t0\tgene_id "cg24159721"; transcript_id "cg24159721"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t566173\t566173\t170.000000\t-\t0\tgene_id "cg15174812"; transcript_id "cg15174812"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t566570\t566570\t272.000000\t+\t0\tgene_id "cg08477687"; transcript_id "cg08477687"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t566732\t566732\t216.000000\t-\t0\tgene_id "cg00034556"; transcript_id "cg00034556"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567113\t567113\t90.000000\t+\t0\tgene_id "cg00645010"; transcript_id "cg00645010"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567207\t567207\t150.000000\t-\t0\tgene_id "cg15394630"; transcript_id "cg15394630"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567312\t567312\t147.000000\t+\t0\tgene_id "cg05001044"; transcript_id "cg05001044"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567349\t567349\t103.000000\t-\t0\tgene_id "cg03344490"; transcript_id "cg03344490"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567359\t567359\t198.000000\t-\t0\tgene_id "cg17501828"; transcript_id "cg17501828"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567502\t567502\t303.000000\t-\t0\tgene_id "cg23917638"; transcript_id "cg23917638"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t567747\t567747\t59.000000\t+\t0\tgene_id "cg18024856"; transcript_id "cg18024856"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t568476\t568476\t386.000000\t-\t0\tgene_id "cg18761878"; transcript_id "cg18761878"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t568536\t568536\t110.000000\t+\t0\tgene_id "cg27534567"; transcript_id "cg27534567"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t569428\t569428\t397.000000\t-\t0\tgene_id "cg08858441"; transcript_id "cg08858441"; \n+chr1\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t569604\t569604\t203.000000\t-\t0\tgene_id "cg03348902"; transcript_id "cg03348902"; \n+chr1\thg1'..b'991"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51169029\t51169029\t662.000000\t-\t0\tgene_id "cg12502079"; transcript_id "cg12502079"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51169500\t51169500\t917.000000\t+\t0\tgene_id "cg06422471"; transcript_id "cg06422471"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51170003\t51170003\t791.000000\t+\t0\tgene_id "cg19324023"; transcript_id "cg19324023"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51171263\t51171263\t830.000000\t+\t0\tgene_id "cg09635994"; transcript_id "cg09635994"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51173065\t51173065\t131.000000\t+\t0\tgene_id "cg19004771"; transcript_id "cg19004771"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51173647\t51173647\t198.000000\t-\t0\tgene_id "cg20569369"; transcript_id "cg20569369"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51175365\t51175365\t286.000000\t-\t0\tgene_id "cg26034629"; transcript_id "cg26034629"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51175515\t51175515\t564.000000\t+\t0\tgene_id "cg25232725"; transcript_id "cg25232725"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51176408\t51176408\t117.000000\t-\t0\tgene_id "cg05615487"; transcript_id "cg05615487"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51176544\t51176544\t159.000000\t-\t0\tgene_id "cg00080682"; transcript_id "cg00080682"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51176712\t51176712\t704.000000\t-\t0\tgene_id "cg22122449"; transcript_id "cg22122449"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51177983\t51177983\t727.000000\t-\t0\tgene_id "cg08423507"; transcript_id "cg08423507"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51194097\t51194097\t291.000000\t-\t0\tgene_id "cg12121634"; transcript_id "cg12121634"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51195438\t51195438\t285.000000\t-\t0\tgene_id "cg04757410"; transcript_id "cg04757410"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51206645\t51206645\t842.000000\t+\t0\tgene_id "cg09456760"; transcript_id "cg09456760"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51213830\t51213830\t220.000000\t-\t0\tgene_id "cg16023925"; transcript_id "cg16023925"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51221675\t51221675\t23.000000\t+\t0\tgene_id "cg11295469"; transcript_id "cg11295469"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51221681\t51221681\t93.000000\t+\t0\tgene_id "cg06701842"; transcript_id "cg06701842"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51221737\t51221737\t40.000000\t-\t0\tgene_id "cg09007244"; transcript_id "cg09007244"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51221774\t51221774\t73.000000\t-\t0\tgene_id "cg27124406"; transcript_id "cg27124406"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222011\t51222011\t17.000000\t+\t0\tgene_id "cg19565306"; transcript_id "cg19565306"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222043\t51222043\t15.000000\t+\t0\tgene_id "cg22012975"; transcript_id "cg22012975"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222051\t51222051\t19.000000\t+\t0\tgene_id "cg10353737"; transcript_id "cg10353737"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222076\t51222076\t28.000000\t+\t0\tgene_id "cg22531257"; transcript_id "cg22531257"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222252\t51222252\t63.000000\t-\t0\tgene_id "cg22662321"; transcript_id "cg22662321"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222519\t51222519\t26.000000\t+\t0\tgene_id "cg06996138"; transcript_id "cg06996138"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51222729\t51222729\t132.000000\t+\t0\tgene_id "cg16817496"; transcript_id "cg16817496"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51223343\t51223343\t362.000000\t+\t0\tgene_id "cg07660283"; transcript_id "cg07660283"; \n+chr22\thg19_wgEncodeHaibMethyl450Gm12878SitesRep1\tCDS\t51225561\t51225561\t634.000000\t+\t0\tgene_id "cg09226288"; transcript_id "cg09226288"; \n' |