Repository 'genome_diversity'
hg clone https://toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity

Changeset 23:66a183c44dd5 (2013-05-22)
Previous changeset 22:95a05c1ef5d5 (2013-03-11) Next changeset 24:248b06e86022 (2013-05-28)
Commit message:
bugfix for Pathway Image tool
modified:
mkpthwpng.py
pathway_image.xml
b
diff -r 95a05c1ef5d5 -r 66a183c44dd5 mkpthwpng.py
--- a/mkpthwpng.py Mon Mar 11 11:28:06 2013 -0400
+++ b/mkpthwpng.py Wed May 22 15:58:18 2013 -0400
[
@@ -30,7 +30,7 @@
  forms = mechanize.ParseResponse(response, backwards_compat=False)
  form=forms[0]
  form["unclassified"]=inpx
- form["org_name"]=[sppPrefx]
+ form["org"]=sppPrefx
  request2 = form.click()
  response2 = mechanize.urlopen(request2)
  a=str(response2.read()).split('href="/kegg-bin/show_pathway?')[1]
b
diff -r 95a05c1ef5d5 -r 66a183c44dd5 pathway_image.xml
--- a/pathway_image.xml Mon Mar 11 11:28:06 2013 -0400
+++ b/pathway_image.xml Wed May 22 15:58:18 2013 -0400
b
@@ -1,4 +1,4 @@
-<tool id="gd_pathway_image" name="Pathway Image" version="1.0.0">
+<tool id="gd_pathway_image" name="Pathway Image" version="1.1.0">
   <description>: Draw a KEGG pathway, highlighting specified gene modules</description>
 
   <command interpreter="python">