| Previous changeset 0:c8ff96b9fb97 (2020-02-12) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seacr commit f7c7e646aa289679a205cc8ce74a77608ce8f422" |
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modified:
seacr.xml test-data/test.bedgraph |
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added:
test-data/control.bedgraph |
| b |
| diff -r c8ff96b9fb97 -r 66b7657f0bd6 seacr.xml --- a/seacr.xml Wed Feb 12 11:27:36 2020 -0500 +++ b/seacr.xml Thu Apr 23 04:30:14 2020 -0400 |
| b |
| @@ -1,9 +1,9 @@ <?xml version="1.0"?> -<tool id="chromhmm_seacr" name="SEACR " version="@TOOL_VERSION@+@WRAPPER_VERSION@"> +<tool id="seacr" name="SEACR" version="@TOOL_VERSION@+@WRAPPER_VERSION@"> <description>for sparse enrichment analysis</description> <macros> <token name="@TOOL_VERSION@">1.3</token> - <token name="@WRAPPER_VERSION@">galaxy0</token> + <token name="@WRAPPER_VERSION@">galaxy1</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">seacr</requirement> @@ -62,9 +62,9 @@ <param name="mode" value="stringent"/> <output name="out_s"> <assert_contents> - <has_n_lines n="103"/> - <has_line line="I	3463	3717	609	4	I:3557-3599"/> - <has_line line="I	225524	225978	1100	5	I:225655-225672"/> + <has_n_lines n="46"/> + <has_line line="chr1	10013	10468	549.991	1.7156	chr1:10346-10357"/> + <has_line line="chr1	365935	366920	84.9934	0.142966	chr1:366191-366801"/> </assert_contents> </output> </test> @@ -79,9 +79,26 @@ <param name="mode" value="relaxed"/> <output name="out_r"> <assert_contents> - <has_n_lines n="483"/> - <has_line line="I	507	665	200	2	I:565-607"/> - <has_line line="I	226156	226330	199	2	I:226231-226256"/> + <has_n_lines n="200"/> + <has_line line="chr1	10013	10468	549.991	1.7156	chr1:10346-10357"/> + <has_line line="chr1	367832	368025	13.7963	0.0714832	chr1:367832-368025"/> + </assert_contents> + </output> + </test> + <!-- #3 --> + <test expect_num_outputs="1"> + <param name="bedgraph" value="test.bedgraph"/> + <conditional name="control_cond"> + <param name="control_sel" value="f"/> + <param name="f" value="control.bedgraph"/> + </conditional> + <param name="normalize" value="norm"/> + <param name="mode" value="relaxed"/> + <output name="out_r"> + <assert_contents> + <has_n_lines n="7"/> + <has_line line="chr1	10596	11929	430.615	0.714832	chr1:11036-11191"/> + <has_line line="chr1	251258	252108	384.65	1.00076	chr1:251347-251526"/> </assert_contents> </output> </test> |
| b |
| diff -r c8ff96b9fb97 -r 66b7657f0bd6 test-data/control.bedgraph --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/control.bedgraph Thu Apr 23 04:30:14 2020 -0400 |
| b |
| b'@@ -0,0 +1,1000 @@\n+chr1\t10007\t10029\t0.00916505\n+chr1\t10029\t10053\t0.0183301\n+chr1\t10053\t10062\t0.0274952\n+chr1\t10062\t10068\t0.0366602\n+chr1\t10068\t10073\t0.0458253\n+chr1\t10073\t10079\t0.0549903\n+chr1\t10079\t10085\t0.0641554\n+chr1\t10085\t10093\t0.0733204\n+chr1\t10093\t10109\t0.0824855\n+chr1\t10109\t10114\t0.0916505\n+chr1\t10114\t10121\t0.109981\n+chr1\t10121\t10136\t0.119146\n+chr1\t10136\t10144\t0.109981\n+chr1\t10144\t10148\t0.100816\n+chr1\t10148\t10151\t0.109981\n+chr1\t10151\t10152\t0.119146\n+chr1\t10152\t10158\t0.128311\n+chr1\t10158\t10175\t0.137476\n+chr1\t10175\t10179\t0.128311\n+chr1\t10179\t10208\t0.109981\n+chr1\t10208\t10232\t0.100816\n+chr1\t10232\t10247\t0.0916505\n+chr1\t10247\t10267\t0.0824855\n+chr1\t10267\t10282\t0.0549903\n+chr1\t10282\t10327\t0.0458253\n+chr1\t10327\t10340\t0.0366602\n+chr1\t10340\t10369\t0.0458253\n+chr1\t10369\t10417\t0.0366602\n+chr1\t10417\t10462\t0.0274952\n+chr1\t10462\t10468\t0.0183301\n+chr1\t11332\t11455\t0.00916505\n+chr1\t11577\t11635\t0.00916505\n+chr1\t11635\t11669\t0.0183301\n+chr1\t11669\t11829\t0.00916505\n+chr1\t11829\t11853\t0.0183301\n+chr1\t11853\t11922\t0.00916505\n+chr1\t11922\t11939\t0.0183301\n+chr1\t11939\t12009\t0.00916505\n+chr1\t12610\t12887\t0.00916505\n+chr1\t13564\t14119\t0.00916505\n+chr1\t15234\t15415\t0.00916505\n+chr1\t15564\t15669\t0.00916505\n+chr1\t16165\t16243\t0.0183301\n+chr1\t16421\t16472\t0.00916505\n+chr1\t16883\t17514\t0.00916505\n+chr1\t18266\t18890\t0.00916505\n+chr1\t19861\t20023\t0.00916505\n+chr1\t22105\t22129\t0.00916505\n+chr1\t22129\t22135\t0.0183301\n+chr1\t22135\t22255\t0.00916505\n+chr1\t22255\t22489\t0.0183301\n+chr1\t22489\t22803\t0.00916505\n+chr1\t25057\t25258\t0.0183301\n+chr1\t25281\t25388\t0.00916505\n+chr1\t25571\t25811\t0.00916505\n+chr1\t26652\t26744\t0.00916505\n+chr1\t27979\t28028\t0.0274952\n+chr1\t28028\t28078\t0.0366602\n+chr1\t28078\t28210\t0.00916505\n+chr1\t28609\t28613\t0.00916505\n+chr1\t28613\t28697\t0.0183301\n+chr1\t28697\t28729\t0.0274952\n+chr1\t28729\t28755\t0.0183301\n+chr1\t28755\t28889\t0.00916505\n+chr1\t28982\t29089\t0.00916505\n+chr1\t29291\t29422\t0.0183301\n+chr1\t29889\t29983\t0.00916505\n+chr1\t30412\t30435\t0.00916505\n+chr1\t30435\t30469\t0.0183301\n+chr1\t30469\t30480\t0.00916505\n+chr1\t30999\t31143\t0.00916505\n+chr1\t31583\t31627\t0.00916505\n+chr1\t32704\t32917\t0.00916505\n+chr1\t35405\t35751\t0.0274952\n+chr1\t35751\t35767\t0.0366602\n+chr1\t35767\t36125\t0.00916505\n+chr1\t36133\t36165\t0.0183301\n+chr1\t36165\t36216\t0.0274952\n+chr1\t36216\t36220\t0.00916505\n+chr1\t36657\t36697\t0.00916505\n+chr1\t37539\t37585\t0.00916505\n+chr1\t39093\t39283\t0.00916505\n+chr1\t39288\t39402\t0.00916505\n+chr1\t40121\t40275\t0.00916505\n+chr1\t40884\t41099\t0.00916505\n+chr1\t41099\t41196\t0.0183301\n+chr1\t41196\t41248\t0.00916505\n+chr1\t41448\t41652\t0.00916505\n+chr1\t42794\t42841\t0.00916505\n+chr1\t42841\t42861\t0.0183301\n+chr1\t42861\t42997\t0.00916505\n+chr1\t43971\t44026\t0.00916505\n+chr1\t44598\t44812\t0.00916505\n+chr1\t44913\t45030\t0.0274952\n+chr1\t45692\t45774\t0.00916505\n+chr1\t45774\t45825\t0.0183301\n+chr1\t45825\t45844\t0.0274952\n+chr1\t45844\t45875\t0.0183301\n+chr1\t45875\t45935\t0.00916505\n+chr1\t46499\t46606\t0.00916505\n+chr1\t46656\t46852\t0.0183301\n+chr1\t47028\t47201\t0.0183301\n+chr1\t47201\t47241\t0.0274952\n+chr1\t47241\t47757\t0.00916505\n+chr1\t47880\t48257\t0.00916505\n+chr1\t48259\t48382\t0.00916505\n+chr1\t48382\t48426\t0.0183301\n+chr1\t48426\t48593\t0.00916505\n+chr1\t48869\t48899\t0.00916505\n+chr1\t48899\t48923\t0.0183301\n+chr1\t48923\t48969\t0.00916505\n+chr1\t48983\t49215\t0.0183301\n+chr1\t49215\t49369\t0.0274952\n+chr1\t49369\t49469\t0.0183301\n+chr1\t49506\t49568\t0.0183301\n+chr1\t49872\t49977\t0.00916505\n+chr1\t50057\t50101\t0.0183301\n+chr1\t50101\t50448\t0.0549903\n+chr1\t50448\t50484\t0.0366602\n+chr1\t51095\t51190\t0.0183301\n+chr1\t54690\t54709\t0.00916505\n+chr1\t54709\t54820\t0.0183301\n+chr1\t54820\t54899\t0.00916505\n+chr1\t55194\t55219\t0.00916505\n+chr1\t55219\t55282\t0.0183301\n+chr1\t55282\t55432\t0.00916505\n+chr1\t55723\t55848\t0.0274952\n+chr1\t56748\t56927\t0.00916505\n+chr1\t57313\t57329\t0.00916505\n+chr1\t57329\t57429\t0.0274952\n+chr1\t57429\t57508\t0.00916505\n+chr1\t58496\t58535\t0.00916505\n+chr1\t58825\t58960\t0.0183301\n+chr1\t58960\t59007\t0.0274952\n+chr1\t59007\t59024\t0.00916505\n+chr1\t59855\t59927\t0.00916505\n+chr1\t60057\t60099\t0.00916505\n+chr1\t61139\t61227\t0.00916505\n+chr1\t61613\t61790\t0.00916505\n+chr1\t62965\t63289\t0.00916505\n+ch'..b'51736\n+chr1\t564949\t564950\t5.52653\n+chr1\t564950\t564951\t5.49903\n+chr1\t564951\t564952\t5.54486\n+chr1\t564952\t564953\t5.57235\n+chr1\t564953\t564954\t5.58152\n+chr1\t564954\t564955\t5.56319\n+chr1\t564955\t564957\t5.70983\n+chr1\t564957\t564958\t5.73732\n+chr1\t564958\t564960\t5.74649\n+chr1\t564960\t564962\t5.76482\n+chr1\t564962\t564963\t5.74649\n+chr1\t564963\t564964\t5.71899\n+chr1\t564964\t564965\t5.62734\n+chr1\t564965\t564966\t5.59985\n+chr1\t564966\t564967\t5.60901\n+chr1\t564967\t564968\t5.59985\n+chr1\t564968\t564969\t5.68233\n+chr1\t564969\t564972\t5.82897\n+chr1\t564972\t564973\t5.8473\n+chr1\t564973\t564974\t5.92979\n+chr1\t564974\t564975\t5.95729\n+chr1\t564975\t564976\t6.02144\n+chr1\t564976\t564977\t6.06727\n+chr1\t564977\t564978\t6.0581\n+chr1\t564978\t564979\t6.07643\n+chr1\t564979\t564981\t6.0856\n+chr1\t564981\t564982\t6.06727\n+chr1\t564982\t564983\t5.97562\n+chr1\t564983\t564984\t5.92063\n+chr1\t564984\t564987\t5.81064\n+chr1\t564987\t564989\t5.78315\n+chr1\t564989\t564990\t5.75565\n+chr1\t564990\t564991\t5.70983\n+chr1\t564991\t564992\t5.56319\n+chr1\t564992\t564993\t5.53569\n+chr1\t564993\t564994\t5.44404\n+chr1\t564994\t564995\t5.45321\n+chr1\t564995\t564997\t5.43488\n+chr1\t564997\t565001\t5.42571\n+chr1\t565001\t565002\t5.36156\n+chr1\t565002\t565003\t5.12327\n+chr1\t565003\t565004\t5.03161\n+chr1\t565004\t565006\t4.94913\n+chr1\t565006\t565010\t4.99495\n+chr1\t565010\t565014\t5.01328\n+chr1\t565014\t565015\t5.02245\n+chr1\t565015\t565016\t5.07744\n+chr1\t565016\t565017\t5.09577\n+chr1\t565017\t565018\t5.12327\n+chr1\t565018\t565019\t5.51736\n+chr1\t565019\t565020\t5.55402\n+chr1\t565020\t565021\t5.57235\n+chr1\t565021\t565022\t5.61818\n+chr1\t565022\t565023\t5.73732\n+chr1\t565023\t565025\t5.77398\n+chr1\t565025\t565026\t5.81981\n+chr1\t565026\t565029\t5.82897\n+chr1\t565029\t565030\t5.88397\n+chr1\t565030\t565032\t5.92979\n+chr1\t565032\t565036\t5.91146\n+chr1\t565036\t565039\t5.89313\n+chr1\t565039\t565041\t5.91146\n+chr1\t565041\t565042\t5.9023\n+chr1\t565042\t565043\t5.88397\n+chr1\t565043\t565044\t5.85647\n+chr1\t565044\t565045\t5.8748\n+chr1\t565045\t565046\t5.86563\n+chr1\t565046\t565047\t5.85647\n+chr1\t565047\t565050\t5.6915\n+chr1\t565050\t565052\t5.71899\n+chr1\t565052\t565054\t5.57235\n+chr1\t565054\t565055\t5.58152\n+chr1\t565055\t565056\t5.54486\n+chr1\t565056\t565057\t5.55402\n+chr1\t565057\t565059\t5.58152\n+chr1\t565059\t565060\t5.54486\n+chr1\t565060\t565061\t5.49903\n+chr1\t565061\t565062\t5.57235\n+chr1\t565062\t565063\t5.59985\n+chr1\t565063\t565065\t5.64567\n+chr1\t565065\t565066\t5.65484\n+chr1\t565066\t565067\t5.64567\n+chr1\t565067\t565068\t5.60901\n+chr1\t565068\t565069\t5.59985\n+chr1\t565069\t565070\t5.60901\n+chr1\t565070\t565071\t5.64567\n+chr1\t565071\t565073\t5.63651\n+chr1\t565073\t565074\t5.62734\n+chr1\t565074\t565075\t5.64567\n+chr1\t565075\t565076\t5.68233\n+chr1\t565076\t565077\t5.72816\n+chr1\t565077\t565078\t5.70983\n+chr1\t565078\t565080\t5.77398\n+chr1\t565080\t565081\t5.80148\n+chr1\t565081\t565083\t5.79231\n+chr1\t565083\t565084\t5.77398\n+chr1\t565084\t565085\t5.5082\n+chr1\t565085\t565086\t5.72816\n+chr1\t565086\t565088\t5.78315\n+chr1\t565088\t565089\t5.79231\n+chr1\t565089\t565090\t5.78315\n+chr1\t565090\t565091\t5.79231\n+chr1\t565091\t565093\t5.77398\n+chr1\t565093\t565094\t5.78315\n+chr1\t565094\t565095\t5.79231\n+chr1\t565095\t565096\t5.81981\n+chr1\t565096\t565098\t5.81064\n+chr1\t565098\t565099\t5.79231\n+chr1\t565099\t565100\t5.83814\n+chr1\t565100\t565101\t5.85647\n+chr1\t565101\t565102\t5.9023\n+chr1\t565102\t565103\t5.92063\n+chr1\t565103\t565106\t5.91146\n+chr1\t565106\t565107\t5.94812\n+chr1\t565107\t565108\t5.86563\n+chr1\t565108\t565109\t5.83814\n+chr1\t565109\t565111\t5.85647\n+chr1\t565111\t565113\t5.86563\n+chr1\t565113\t565114\t5.85647\n+chr1\t565114\t565115\t5.81981\n+chr1\t565115\t565116\t5.79231\n+chr1\t565116\t565117\t5.73732\n+chr1\t565117\t565119\t5.85647\n+chr1\t565119\t565120\t5.8473\n+chr1\t565120\t565122\t5.83814\n+chr1\t565122\t565123\t5.88397\n+chr1\t565123\t565125\t5.9023\n+chr1\t565125\t565126\t5.94812\n+chr1\t565126\t565127\t5.98478\n+chr1\t565127\t565128\t6.02144\n+chr1\t565128\t565129\t5.99395\n+chr1\t565129\t565130\t5.98478\n+chr1\t565130\t565131\t5.97562\n+chr1\t565131\t565132\t5.98478\n+chr1\t565132\t565134\t5.80148\n+chr1\t565134\t565136\t5.81064\n+chr1\t565136\t565137\t5.80148\n+chr1\t565137\t565139\t5.81981\n+chr1\t565139\t565141\t5.81064\n+chr1\t565141\t565142\t5.89313\n+chr1\t565142\t565144\t5.9023\n+chr1\t565144\t565147\t5.94812\n+chr1\t565147\t565148\t5.89313\n' |
| b |
| diff -r c8ff96b9fb97 -r 66b7657f0bd6 test-data/test.bedgraph --- a/test-data/test.bedgraph Wed Feb 12 11:27:36 2020 -0500 +++ b/test-data/test.bedgraph Thu Apr 23 04:30:14 2020 -0400 |
| b |
| b'@@ -1,3418 +1,1000 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|