| Previous changeset 45:eb339c5849bb (2014-09-26) Next changeset 47:10d30c88fe05 (2015-04-21) |
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Commit message:
Fixed geneBody coverage sample names |
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modified:
geneBody_coverage.xml |
| b |
| diff -r eb339c5849bb -r 68ada7ca4cc4 geneBody_coverage.xml --- a/geneBody_coverage.xml Fri Sep 26 15:04:18 2014 -0400 +++ b/geneBody_coverage.xml Mon Sep 29 16:32:13 2014 -0400 |
| b |
| @@ -9,14 +9,14 @@ </requirements> <command> #set $safename = ''.join(c in '_0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' and c or '_' for c in $input.display_name) - #set $fname = "dataset_1_" + str($safename) + ".bam" + #set $fname = "d1_" + str($safename) + ".bam" ln -s '${input}' '${fname}' && ln -s '${input.metadata.bam_index}' '${fname}.bai' && echo '${fname}' > input_list.txt && #for $i, $additional_input in enumerate($additionalinputs): #set $index = $i+2 - #set $safename = ''.join(c in '_0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' and c or '_' for c in $input.display_name) - #set $fname = 'dataset_' + str($index) + '_' + str($safename) + ".bam" + #set $safename = ''.join(c in '_0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' and c or '_' for c in $additional_input.file.display_name) + #set $fname = 'd' + str($index) + '_' + str($safename) + ".bam" ln -s '$additional_input.file' '${fname}' && ln -s '$additional_input.file.metadata.bam_index' '${fname}.bai' && echo '${fname}' >> input_list.txt && |