| Previous changeset 5:bcc0c7093e7a (2016-02-04) Next changeset 7:c9e267cb84c0 (2016-09-18) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 78fca5d46c4554514bc51b0010a7611aaced40b9-dirty |
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modified:
readmap.xml |
| b |
| diff -r bcc0c7093e7a -r 68f58363f1c6 readmap.xml --- a/readmap.xml Thu Feb 04 06:27:43 2016 -0500 +++ b/readmap.xml Thu Feb 04 08:41:48 2016 -0500 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.1.3"> +<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.1.5"> <description>from sRbowtie aligment</description> <requirements> <requirement type="package" version="0.12.7">bowtie</requirement> @@ -158,7 +158,7 @@ ## GRAPHS if (n_genes > 7) {page_height_simple = 11.69; page_height_combi=11.69; rows_per_page=${rows_per_page}; extrarow=0 } else { - rows_per_page= 8; page_height_simple = 11.69; page_height_combi=11.69; extrarow=0 } + rows_per_page= n_genes; page_height_simple = 2.5*n_genes; page_height_combi=page_height_simple*2; extrarow=0 } ## rows_per_page= 8; page_height_simple = 11.69/7*n_genes; page_height_combi=11.69/9*(n_genes*2); extrarow=0 } ## rows_per_page= n_genes; page_height_simple = 11.69/n_genes/4; page_height_combi=11.69/(n_genes*2); extrarow=1 } if (n_samples > 4) {page_width = 8.2677*n_samples/4} else {page_width = 8.2677*n_samples/3} # to test @@ -198,6 +198,7 @@ devname=dev.off() pdf(file="${combi_PDF}", paper="special", height=page_height_combi, width=page_width) + if (rows_per_page %% 2 != 0) { rows_per_page = rows_per_page + 1} for (i in seq(1,n_genes,rows_per_page/2)) { start=i end=i+rows_per_page/2-1 |