| Previous changeset 9:f1a4d7607ce6 (2015-09-10) Next changeset 11:8a7203f7b9e7 (2015-09-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit f464cfa84c2a4d03e73632c475ecb93055f17c34 |
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modified:
abundance-dist-single.xml abundance-dist.xml filter-below-abund.xml |
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| diff -r f1a4d7607ce6 -r 69a0d7b6d0d0 abundance-dist-single.xml --- a/abundance-dist-single.xml Thu Sep 10 18:49:27 2015 -0400 +++ b/abundance-dist-single.xml Thu Sep 10 19:32:16 2015 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="gedlab-khmer-abundance-dist-single" name="Abundance Distribution (all-in-one)" - version="2.0-2"> + version="2.0-3"> <description> Calculate abundance distribution of the k-mers in a given @@ -64,8 +64,8 @@ <param name="no_zero" value="false" /> <output name="output_histogram_filename"> <assert_contents> - <has_text text="1 96 96 0.98" /> - <has_text text="1001 2 98 1.0" /> + <has_text text="1,96,96,0.98" /> + <has_text text="1001,2,98,1.0" /> </assert_contents> </output> </test> @@ -79,8 +79,8 @@ <param name="bigcount" value="false" /> <output name="output_histogram_filename"> <assert_contents> - <has_text text="1 96 96 0.98" /> - <has_text text="255 2 98 1.0" /> + <has_text text="1,96,96,0.98" /> + <has_text text="255,2,98,1.0" /> </assert_contents> </output> </test> |
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| diff -r f1a4d7607ce6 -r 69a0d7b6d0d0 abundance-dist.xml --- a/abundance-dist.xml Thu Sep 10 18:49:27 2015 -0400 +++ b/abundance-dist.xml Thu Sep 10 19:32:16 2015 -0400 |
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| @@ -1,6 +1,6 @@ <tool id="gedlab-khmer-abundance-dist" name="Abundance Distribution" - version="2.0-1"> + version="2.0-2"> <description> Calculate abundance distribution of the k-mers in a given sequence @@ -40,8 +40,8 @@ <param name="no_zero" value="false" /> <output name="output_histogram_filename"> <assert_contents> - <has_line_matching expression="1 96 96 0.98" /> - <has_line_matching expression="1001 2 98 1.0" /> + <has_line_matching expression="1,96,96,0.98" /> + <has_line_matching expression="1001,2,98,1.0" /> </assert_contents> </output> </test> @@ -54,8 +54,8 @@ </assert_stderr> <output name="output_histogram_filename"> <assert_contents> - <has_line_matching expression="1 96 96 0.98" /> - <has_line_matching expression="255 2 98 1.0" /> + <has_line_matching expression="1,96,96,0.98" /> + <has_line_matching expression="255,2,98,1.0" /> </assert_contents> </output> </test> |
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| diff -r f1a4d7607ce6 -r 69a0d7b6d0d0 filter-below-abund.xml --- a/filter-below-abund.xml Thu Sep 10 18:49:27 2015 -0400 +++ b/filter-below-abund.xml Thu Sep 10 19:32:16 2015 -0400 |
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| @@ -2,7 +2,6 @@ name="Filter below abundance cutoff of 50" version="2.0-1"> -<!-- Work in progress, gating on filter-below-abund.py being upgraded --> <description> Trims fastq/fasta sequences at k-mers with abundance below 50 based on a provided k-mer counting table. @@ -57,9 +56,4 @@ <expand macro="software-citation" /> <expand macro="counting-citation" /> </citations> - <!-- [OPTIONAL] ReST Help displayed in Galaxy --> - <!-- - <help> - </help> - --> </tool> |