Repository 'data_manager_fetch_gene_annotation'
hg clone https://toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation

Changeset 18:6a67977a23da (2016-06-22)
Previous changeset 17:57b716eee99f (2016-06-22) Next changeset 19:7662f6a989c9 (2016-06-22)
Commit message:
Uploaded
modified:
data_manager_gene_annotation/data_manager/data_manager.py
b
diff -r 57b716eee99f -r 6a67977a23da data_manager_gene_annotation/data_manager/data_manager.py
--- a/data_manager_gene_annotation/data_manager/data_manager.py Wed Jun 22 16:35:56 2016 -0400
+++ b/data_manager_gene_annotation/data_manager/data_manager.py Wed Jun 22 16:37:34 2016 -0400
b
@@ -53,7 +53,7 @@
     workdir = os.path.join(os.getcwd(), 'gene_annotation')
 
     # Attempt to download gene annotation file from given url
-    gene_annotation_file_path = url_download("http://www.scott-ouellette.com/gene_annotations/chr1-hg19_genes.gtf", args.name, workdir)
+    url_download(args.url, args.name, workdir)
 
     # Update Data Manager Json and write out
     data_manager_entry = {