| Previous changeset 1:220e2f7ff8bb (2024-05-11) Next changeset 3:ae1374a5ecdf (2024-09-25) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 501c1cb91f4b91ec93e6df6e555323bbe8e2b703 |
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modified:
CreateSchema.xml macros.xml |
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added:
test-data/PrepExternal_test.zip |
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| diff -r 220e2f7ff8bb -r 6a8df4d75f3a CreateSchema.xml --- a/CreateSchema.xml Sat May 11 22:50:19 2024 +0000 +++ b/CreateSchema.xml Fri Jun 07 14:27:26 2024 +0000 |
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| @@ -5,9 +5,11 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ + #import re mkdir 'input' && #for $file in $input_file - ln -sf '$file' 'input/${file.element_identifier}' && + #set escaped_element_identifier = re.sub('[^\w\-]', '_', str($file.element_identifier)) + ln -sf '$file' 'input/${escaped_element_identifier}.${file.ext}' && #end for chewBBACA.py CreateSchema #if $training_file: @@ -62,6 +64,16 @@ </output> </test> <test expect_num_outputs="1"> + <param name="input_file" value="GCA_000007265.1_ASM726v1_genomic"/> + <output name="schema"> + <assert_contents> + <has_archive_member path="schema_seed/.*\.fasta" n="204"/> + <has_archive_member path="schema_seed/short/.*\.fasta" n="102"/> + <has_archive_member path="schema_seed/\.schema_config"/> + </assert_contents> + </output> + </test> + <test expect_num_outputs="1"> <param name="input_file" value="GCA_000007265.1_ASM726v1_genomic.fna"/> <param name="training_file" value="Streptococcus_agalactiae.trn"/> <output name="schema"> @@ -77,7 +89,7 @@ <param name="cds_input" value="true"/> <output name="schema"> <assert_contents> - <has_archive_member path="schema_seed/CDS-Str-agalactiae-protein1.fasta"/> + <has_archive_member path="schema_seed/CDS-Str-agalactiae-fasta-protein1.fasta"/> </assert_contents> </output> </test> |
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| diff -r 220e2f7ff8bb -r 6a8df4d75f3a macros.xml --- a/macros.xml Sat May 11 22:50:19 2024 +0000 +++ b/macros.xml Fri Jun 07 14:27:26 2024 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@CHEW_VERSION@">3.3.3</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">22.05</token> <xml name="requirements"> <requirements> |
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| diff -r 220e2f7ff8bb -r 6a8df4d75f3a test-data/PrepExternal_test.zip |
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| Binary file test-data/PrepExternal_test.zip has changed |