| Previous changeset 27:cdd33c5c8ac1 (2017-07-10) Next changeset 29:7e8a8b732db3 (2018-05-16) |
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Commit message:
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060 |
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modified:
Bed.py cytoBand.py hubArchiveCreator.xml |
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| diff -r cdd33c5c8ac1 -r 6aa28a85cc38 Bed.py --- a/Bed.py Mon Jul 10 12:28:50 2017 -0400 +++ b/Bed.py Mon Jul 10 17:08:38 2017 -0400 |
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| @@ -44,6 +44,8 @@ subtools.bedToBigBed(self.sortedBedFile.name, self.chromSizesFile.name, self.bigBedFile.name, + typeOption='bed4', + tab='True', extraIndex='name' ) |
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| diff -r cdd33c5c8ac1 -r 6aa28a85cc38 cytoBand.py --- a/cytoBand.py Mon Jul 10 12:28:50 2017 -0400 +++ b/cytoBand.py Mon Jul 10 17:08:38 2017 -0400 |
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| @@ -41,7 +41,8 @@ subtools.bedToBigBed(sortedBedFile.name, self.chromSizesFile.name, bigBedFile.name, - typeOption='bed4', + typeOption='bed4+1', + tab='True', autoSql=auto_sql_option) # Create the Track Object |
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| diff -r cdd33c5c8ac1 -r 6aa28a85cc38 hubArchiveCreator.xml --- a/hubArchiveCreator.xml Mon Jul 10 12:28:50 2017 -0400 +++ b/hubArchiveCreator.xml Mon Jul 10 17:08:38 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="hubArchiveCreator" name="Hub Archive Creator" version="2.4.1"> +<tool id="hubArchiveCreator" name="Hub Archive Creator" version="2.4.2"> <description> This Galaxy tool permits to prepare your files to be ready for Assembly Hub visualization. @@ -222,8 +222,8 @@ <when value="bed"> <conditional name="bedChoice"> <param name="bed_select" type="select" label="Bed Choice"> - <option value="bed_generic" selected="true">BED Generic (bed3+)</option> - <option value="bed_cytoBand">cytoBand Track (bed4)</option> + <option value="bed_generic" selected="true">BED Generic (bed4)</option> + <option value="bed_cytoBand">cytoBand Track (bed4+1)</option> <option value="bed_simple_repeats_option">BED Simple repeat (bed4+12 / simpleRepeat.as)</option> <option value="bed_splice_junctions_option">BED Splice junctions (bed12+1 / spliceJunctions.as)</option> <option value="bed_blast_alignment_option">Blast alignments (bed12+12 / bigPsl.as)</option> |