| Previous changeset 2:b471600c8a3b (2014-04-27) Next changeset 4:279806044d60 (2014-07-21) |
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Commit message:
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modified:
tool_dependencies.xml |
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| diff -r b471600c8a3b -r 6b6b5498d9a2 tool_dependencies.xml --- a/tool_dependencies.xml Sun Apr 27 14:28:10 2014 -0400 +++ b/tool_dependencies.xml Tue Apr 29 14:05:11 2014 -0400 |
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| @@ -1,19 +1,19 @@ <?xml version="1.0"?> <tool_dependency> <package name="ncurses" version="5.9"> - <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="71e3f4bfd1a9" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="0.1.19"> <install version="1.0"> <actions> <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> <action type="set_environment_for_install"> - <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="71e3f4bfd1a9" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="ncurses" version="5.9" /> </repository> </action> <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> - <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action> + <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> <action type="shell_command">make</action> <action type="move_file"> <source>samtools</source> |