| Previous changeset 0:ceef9bc6bbc7 (2018-04-12) Next changeset 2:877d2be25a6a (2018-04-19) |
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Commit message:
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/askor commit dea4b3dfc2393e4f5b9945099cfec37afe471283 |
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modified:
askor_de.xml |
| b |
| diff -r ceef9bc6bbc7 -r 6bbc90a11c3f askor_de.xml --- a/askor_de.xml Thu Apr 12 05:23:45 2018 -0400 +++ b/askor_de.xml Wed Apr 18 06:26:17 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="askor_de" name="AskoR DE" version="0.1"> +<tool id="askor_de" name="AskoR DE" version="0.2"> <description>EdgeR for AskOmics</description> <requirements> <requirement type="package" version="3.34.6">bioconductor-limma</requirement> @@ -59,9 +59,9 @@ #end if ]]></command> <inputs> - <param format="csv" name="fileofcounts" type="data" label="File of counts" /> - <param format="tsv" name="samples" type="data" label="Descriptions of the samples" /> - <param format="tsv" name="contrasts" type="data" label="Descriptions of the contrasts" /> + <param format="tabular,csv" name="fileofcounts" type="data" label="File of counts" /> + <param format="tabular,tsv" name="samples" type="data" label="Descriptions of the samples" /> + <param format="tabular,tsv" name="contrasts" type="data" label="Descriptions of the contrasts" /> <section name="adv" title="Format options" expanded="false"> <param name="colgenes" type="integer" label="Column of the genes" value="1" optional="true" /> <!--param name="sep" type="text" label="Field separator" value="\t" optional="true" /--> @@ -103,15 +103,15 @@ </inputs> <outputs> <data format="pdf" name="out_pdf" label="${tool.name} on ${on_string}: Graphics" /> - <data name="output" format="tsv" label="${tool.name} on ${on_string}"> - <discover_datasets pattern="(?P<designation>.+)\.txt" ext="tsv" visible="true" directory="askor_output" /> + <data name="output" format="tabular" label="${tool.name} on ${on_string}"> + <discover_datasets pattern="(?P<designation>.+)\.txt" ext="tabular" visible="true" directory="askor_output" /> </data> </outputs> <tests> <test> <param name="fileofcounts" ftype="csv" value="counts.csv" /> - <param name="samples" ftype="tsv" value="Samples.txt" /> - <param name="contrasts" ftype="tsv" value="Contrasts.txt" /> + <param name="samples" ftype="tabular" value="Samples.txt" /> + <param name="contrasts" ftype="tabular" value="Contrasts.txt" /> <section name="adv"> <param name="colgenes" value="3" /> </section> @@ -120,13 +120,13 @@ </section> <output name="out_pdf" file="out.pdf" compare="sim_size"/> <output name="output"> - <discovered_dataset designation="AskoAvsK" ftype="tsv" file="AskoAvsK.txt" compare="sim_size" /> - <discovered_dataset designation="AskoT1AvsT1K" ftype="tsv" file="AskoT1AvsT1K.txt" compare="sim_size" /> - <discovered_dataset designation="AskoT1vsT0" ftype="tsv" file="AskoT1vsT0.txt" compare="sim_size" /> - <discovered_dataset designation="AskoT1vsT2" ftype="tsv" file="AskoT1vsT2.txt" compare="sim_size" /> - <discovered_dataset designation="condition.asko" ftype="tsv" file="condition.asko.txt" compare="sim_size" /> - <discovered_dataset designation="context.asko" ftype="tsv" file="context.asko.txt" compare="sim_size" /> - <discovered_dataset designation="contrast.asko" ftype="tsv" file="contrast.asko.txt" compare="sim_size" /> + <discovered_dataset designation="AskoAvsK" ftype="tabular" file="AskoAvsK.txt" compare="sim_size" /> + <discovered_dataset designation="AskoT1AvsT1K" ftype="tabular" file="AskoT1AvsT1K.txt" compare="sim_size" /> + <discovered_dataset designation="AskoT1vsT0" ftype="tabular" file="AskoT1vsT0.txt" compare="sim_size" /> + <discovered_dataset designation="AskoT1vsT2" ftype="tabular" file="AskoT1vsT2.txt" compare="sim_size" /> + <discovered_dataset designation="condition.asko" ftype="tabular" file="condition.asko.txt" compare="sim_size" /> + <discovered_dataset designation="context.asko" ftype="tabular" file="context.asko.txt" compare="sim_size" /> + <discovered_dataset designation="contrast.asko" ftype="tabular" file="contrast.asko.txt" compare="sim_size" /> </output> </test> </tests> |