Repository 'quality_filter'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/quality_filter

Changeset 2:6c6f15373f96 (2014-11-03)
Previous changeset 1:64f5401327e8 (2014-10-30) Next changeset 3:2f4393f9f912 (2015-07-21)
Commit message:
Uploaded tool definition that handles error cases in a less pragmatic way.
modified:
quality_filter.py
quality_filter.xml
b
diff -r 64f5401327e8 -r 6c6f15373f96 quality_filter.py
--- a/quality_filter.py Thu Oct 30 15:40:05 2014 -0400
+++ b/quality_filter.py Mon Nov 03 17:29:20 2014 -0500
b
@@ -20,7 +20,6 @@
 from bx.bitset import *
 from bx.bitset_builders import *
 from bx.cookbook import doc_optparse
-from galaxy.tools.exception_handling import *
 import bx.align.maf
 
 class FileBinnedArrayDir( DictMixin ):
b
diff -r 64f5401327e8 -r 6c6f15373f96 quality_filter.xml
--- a/quality_filter.xml Thu Oct 30 15:40:05 2014 -0400
+++ b/quality_filter.xml Mon Nov 03 17:29:20 2014 -0500
b
@@ -22,9 +22,6 @@
  #end if
    ${GALAXY_DATA_INDEX_DIR}/quality_scores.loc
   </command>
-  <stdio>
-    <exit_code range="1:" level="fatal" description="Error" />
-  </stdio>
   <inputs>
     <param format="maf" name="input" type="data" label="Select data"/>
     <param name="primary_species" type="select" label="Use quality scores of" display="checkboxes" multiple="true">