Repository 'proteore_reactome'
hg clone https://toolshed.g2.bx.psu.edu/repos/proteore/proteore_reactome

Changeset 7:6c95f1b88627 (2019-03-05)
Previous changeset 6:9cc475dcd0f2 (2018-12-18) Next changeset 8:a58dc5d4b8cd (2019-06-28)
Commit message:
planemo upload commit 89cd1b5f2ca7b135abfe2d9ed18bf2478a59e099-dirty
modified:
reactome_analysis.xml
b
diff -r 9cc475dcd0f2 -r 6c95f1b88627 reactome_analysis.xml
--- a/reactome_analysis.xml Tue Dec 18 10:03:50 2018 -0500
+++ b/reactome_analysis.xml Tue Mar 05 09:40:41 2019 -0500
[
@@ -1,5 +1,5 @@
-<tool id="reactome_analysis" name="Query Reactome pathway database" version="2018.12.12">
-    <description></description>
+<tool id="reactome_analysis" name="Query pathway database" version="2019.03.05">
+    <description>[Reactome]</description>
     <requirements>
     </requirements>
     <stdio>
@@ -39,7 +39,9 @@
             <when value="file" >
                 <param name="file" type="data" format="txt, tabular" label="Input file containing your IDs" help="Input file is a tab-delimited file with at least one contain containing identifier" />
                 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does file contain header?" />
-         <param type="text" name="ncol" value="c1" label="Column number of IDs (e.g : Enter c1 for column n°1)" />
+         <param type="text" name="ncol" value="c1" label="Column number of IDs (e.g : Enter c1 for column n°1)">
+                    <validator type="regex" message="Please enter a column number, for example: 'c1' for the first column">[c]{0,1}[0-9]+</validator>
+                </param>
             </when>
         </conditional>
         <param name="species" type="select" label="Species">