Repository 'xcms_fillpeaks'
hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks

Changeset 10:6caa60dcc217 (2017-02-07)
Previous changeset 9:ee29f0a6e361 (2017-01-30) Next changeset 11:de0d85537ee3 (2017-04-07)
Commit message:
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 30bf079aba283d5b37a77cbd8996592ad99eca8c
modified:
xcms.r
b
diff -r ee29f0a6e361 -r 6caa60dcc217 xcms.r
--- a/xcms.r Mon Jan 30 08:53:48 2017 -0500
+++ b/xcms.r Tue Feb 07 04:05:02 2017 -0500
b
@@ -246,7 +246,7 @@
   getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
+if (thefunction == "fillPeaks" && exists("intval")) {
   cat("\t\tGET THE PEAK LIST\n")
   getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }