| Previous changeset 1:0cdf340364ed (2020-04-28) |
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Commit message:
"planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 80069808371b58f45da0c8133c27d67ac1a5b448" |
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modified:
README.rst replicate_filter.xml |
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| diff -r 0cdf340364ed -r 6cb796aa12c8 README.rst --- a/README.rst Tue Apr 28 17:43:04 2020 -0400 +++ b/README.rst Wed Feb 17 10:54:32 2021 +0000 |
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| @@ -1,6 +1,6 @@ Galaxy tool wrappers for DIMSpy =============================== -|Build Status (Travis)| |galaxy-eu| |Git| |Bioconda| |License| +|Build Status (last commit)| |Build Status (weekly global test)| |galaxy-eu| |Git| |Bioconda| |License| Galaxy tool wrappers for Python package DIMSpy: data processing of direct-infusion mass spectrometry (DIMS)-based metabolomics and lipidomics data @@ -63,8 +63,11 @@ section 3.3 of the RawFileReader License, and is not granted rights to redistribute RawFileReader. -.. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/dimspy-galaxy.svg?style=flat&maxAge=3600&label=Travis-CI - :target: https://travis-ci.com/computational-metabolomics/dimspy-galaxy +.. |Build Status (last commit)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Galaxy%20Tool%20Linting%20and%20Tests%20for%20push%20and%20PR/badge.svg + :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Galaxy+Tool+Linting+and+Tests+for+push+and+PR%22 + +.. |Build Status (weekly global test)| image:: https://github.com/computational-metabolomics/dimspy-galaxy/workflows/Weekly%20global%20Tool%20Linting%20and%20Tests/badge.svg + :target: https://github.com/computational-metabolomics/dimspy-galaxy/actions?query=workflow%3A%22Weekly+global+Tool+Linting+and+Tests%22 .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 :target: https://github.com/computational-metabolomics/dimspy |
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| diff -r 0cdf340364ed -r 6cb796aa12c8 replicate_filter.xml --- a/replicate_filter.xml Tue Apr 28 17:43:04 2020 -0400 +++ b/replicate_filter.xml Wed Feb 17 10:54:32 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy@GALAXY_TOOL_VERSION@"> +<tool id="dimspy_replicate_filter" name="Replicate Filter" version="@TOOL_VERSION@+galaxy1"> <description> - Remove peaks that fail to appear in at least x-out-of-n (technical) replicates</description> <macros> <import>macros.xml</import> @@ -19,6 +19,7 @@ --rsd-threshold $rsd_threshold #end if --report '$report' + --ncpu \${GALAXY_SLOTS:-1} && dimspy create-sample-list --input '$hdf5_file_out' |