Repository 'chimerascan'
hg clone https://toolshed.g2.bx.psu.edu/repos/bioitcore/chimerascan

Changeset 6:6d54abd510d7 (2017-09-13)
Previous changeset 5:c6b0f5c3f3b4 (2017-09-13) Next changeset 7:37a16ff93dd9 (2017-10-12)
Commit message:
planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty
modified:
chimerascan.xml
b
diff -r c6b0f5c3f3b4 -r 6d54abd510d7 chimerascan.xml
--- a/chimerascan.xml Wed Sep 13 15:07:06 2017 -0400
+++ b/chimerascan.xml Wed Sep 13 15:11:27 2017 -0400
[
@@ -2,7 +2,7 @@
     <description>A tool for identifying chimeric transcription in sequencing data.</description>
     <command detect_errors="exit_code"><![CDATA[
             bash $__tool_directory__/run.sh $__tool_directory__ &&
-            python chimerascan_run.py -p 8 myindex
+            python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex
             #if $input_type_conditional.chimerascan_input_type == "paired"
                     $input_type_conditional.input_1 $input_type_conditional.input_2
             #else