| Previous changeset 19:e541089245ba (2016-09-01) Next changeset 21:9672fe07a232 (2016-12-05) |
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Commit message:
planemo upload for repository https://github.com/portiahollyoak/Tools commit 350d1df132e1298f069c33f8961a06fc4a194887 |
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modified:
temp.xml |
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removed:
tool_dependencies.xml |
| b |
| diff -r e541089245ba -r 6e02b9179a24 temp.xml --- a/temp.xml Thu Sep 01 11:11:59 2016 -0400 +++ b/temp.xml Wed Oct 26 07:24:45 2016 -0400 |
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| @@ -1,15 +1,9 @@ -<tool id ="run_TEMP" name="TEMP" version="0.2.2"> +<tool id ="run_TEMP" name="TEMP" version="0.2.2.0"> <description></description> <requirements> - <!-- The following are classical toolshed packages and should be removed - once conda is deemed stable--> - <requirement type="package" version="1.6.922">bioperl</requirement> - <requirement type="package" version="0.7.12">bwa</requirement> - <requirement type="package" version="2.24">bedtools</requirement> - <!-- end of toolshed package definitions --> <requirement type="package" version="1.6.924">perl-bioperl</requirement> <requirement type="package" version="0.7.13">bwa</requirement> - <requirement type="package" version="2.25.0">bedtools</requirement> + <requirement type="package" version="2.26.0gx">bedtools</requirement> <requirement type="package" version="324">ucsc-twobittofa</requirement> <requirement type="package" version="0.1.19">samtools</requirement> </requirements> |
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| diff -r e541089245ba -r 6e02b9179a24 tool_dependencies.xml --- a/tool_dependencies.xml Thu Sep 01 11:11:59 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,18 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="bioperl" version="1.6.922"> - <repository changeset_revision="52a377d1c8de" name="package_bioperl_1_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="perl" version="5.18.1"> - <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="bedtools" version="2.24"> - <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="bwa" version="0.7.12"> - <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="samtools" version="0.1.19"> - <repository changeset_revision="c9bd782f5342" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency> |