| Previous changeset 19:010e58e9d822 (2018-04-05) Next changeset 21:2a8ca4863f1d (2018-08-22) |
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Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 38cfe39e3b3c82bbc0c2013e3068bd71adc3a9cb |
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modified:
deepTools_macros.xml plotHeatmap.xml |
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| diff -r 010e58e9d822 -r 6e4c17379a40 deepTools_macros.xml --- a/deepTools_macros.xml Thu Apr 05 10:59:22 2018 -0400 +++ b/deepTools_macros.xml Mon Jul 09 19:13:59 2018 -0400 |
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| @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.0.2</token> + <token name="@WRAPPER_VERSION@">3.1.0</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.0.2">deeptools</requirement> + <requirement type="package" version="3.1.0">deeptools</requirement> <requirement type="package" version="1.7">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -603,6 +603,18 @@ (default: False)" /> </xml> + <xml name="exactScaling"> + <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False" + label="Compute an exact scaling factor" + help="Compute an exact scaling factor rather than one based on + sampled reads. This is only useful in cases where you are + filtering some alignments out AND this are both rare and + tend to clump together in the genome. In such cases the + region-based sampling employed by deepTools would produce + inaccurate scaling factors. Note that this option results + in the process taking significantly more time to complete." /> + </xml> + <xml name="input_save_matrix_values"> <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> </xml> |
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| diff -r 010e58e9d822 -r 6e4c17379a40 plotHeatmap.xml --- a/plotHeatmap.xml Thu Apr 05 10:59:22 2018 -0400 +++ b/plotHeatmap.xml Mon Jul 09 19:13:59 2018 -0400 |
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| @@ -87,11 +87,11 @@ --refPointLabel '$advancedOpt.referencePointLabel' #if $advancedOpt.samplesLabel and str($advancedOpt.samplesLabel).strip() != "": - --samplesLabel $advancedOpt.samplesLabel + --samplesLabel '$advancedOpt.samplesLabel' #end if #if $advancedOpt.regionsLabel and str($advancedOpt.regionsLabel).strip() != "": - --regionsLabel $advancedOpt.regionsLabel + --regionsLabel '$advancedOpt.regionsLabel' #end if #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": |