| Previous changeset 8:3d89af8a44f0 (2021-06-03) Next changeset 10:df0c8d0a5992 (2021-11-29) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/edger commit 8c4b8f8711df0a4d6fa98fa8a6f91b977395d62c" |
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modified:
edger.R edger.xml |
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| diff -r 3d89af8a44f0 -r 6e53e565fc6a edger.R --- a/edger.R Thu Jun 03 19:34:18 2021 +0000 +++ b/edger.R Sat Jun 26 19:09:53 2021 +0000 |
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| @@ -277,7 +277,7 @@ # Process factors if (is.null(opt$factInput)) { - factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE) + factordata <- read.table(opt$factFile, header = TRUE, sep = "\t", strip.white = TRUE, stringsAsFactors = TRUE) # check samples names match if (!any(factordata[, 1] %in% colnames(counts))) { stop("Sample IDs in factors file and count matrix don't match") |
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| diff -r 3d89af8a44f0 -r 6e53e565fc6a edger.xml --- a/edger.xml Thu Jun 03 19:34:18 2021 +0000 +++ b/edger.xml Sat Jun 26 19:09:53 2021 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="edger" name="edgeR" version="3.34.0"> +<tool id="edger" name="edgeR" version="3.34.0+galaxy1"> <description> Perform differential expression of count data </description> |