| Previous changeset 0:1030acbecce6 (2014-01-27) Next changeset 2:8afd8a379d5f (2015-07-21) |
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Commit message:
Update Tophat URLs in help text. |
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modified:
tophat_wrapper.xml |
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| diff -r 1030acbecce6 -r 6eaefb5f755a tophat_wrapper.xml --- a/tophat_wrapper.xml Mon Jan 27 09:25:27 2014 -0500 +++ b/tophat_wrapper.xml Mon Nov 17 11:23:25 2014 -0500 |
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| @@ -485,7 +485,7 @@ TopHat_ is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Please cite: Trapnell, C., Pachter, L. and Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009). -.. _Tophat: http://tophat.cbcb.umd.edu/ +.. _Tophat: http://ccb.jhu.edu/software/tophat/ ------ @@ -495,7 +495,7 @@ There is no such thing (yet) as an automated gearshift in splice junction identification. It is all like stick-shift driving in San Francisco. In other words, running this tool with default parameters will probably not give you meaningful results. A way to deal with this is to **understand** the parameters by carefully reading the `documentation`__ and experimenting. Fortunately, Galaxy makes experimenting easy. -.. __: http://tophat.cbcb.umd.edu/manual.html +.. __: http://ccb.jhu.edu/software/tophat/manual.shtml ------ |