| Previous changeset 1:40d8186eb3bb (2016-07-13) Next changeset 3:809a20f5dcb8 (2017-01-31) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6 |
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modified:
bcftools_roh.xml macros.xml |
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| diff -r 40d8186eb3bb -r 6ed9d03452ad bcftools_roh.xml --- a/bcftools_roh.xml Wed Jul 13 11:00:47 2016 -0400 +++ b/bcftools_roh.xml Mon Oct 03 12:18:11 2016 -0400 |
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| @@ -1,5 +1,5 @@ <?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1"> <description>HMM model for detecting runs of autozygosity</description> <macros> <token name="@EXECUTABLE@">roh</token> @@ -79,8 +79,8 @@ <param name="rec_rate" type="float" label="Rec Rate" optional="True" help="Constant recombination rate per bp" /> </section> <section name="sec_hmm" expanded="true" title="HMM Options"> - <param name="hw_to_az" type="float" label="Hw To Az" default="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" /> - <param name="az_to_hw" type="float" label="Az To Hw" default="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" /> + <param name="hw_to_az" type="float" label="Hw To Az" value="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" /> + <param name="az_to_hw" type="float" label="Az To Hw" value="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" /> <param name="viterbi_training" type="boolean" truevalue="--viterbi-training" falsevalue="" label="Viterbi Training" help="Perform Viterbi training to estimate transition probabilities" /> </section> </inputs> |
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| diff -r 40d8186eb3bb -r 6ed9d03452ad macros.xml --- a/macros.xml Wed Jul 13 11:00:47 2016 -0400 +++ b/macros.xml Mon Oct 03 12:18:11 2016 -0400 |
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| @@ -339,7 +339,6 @@ </when> <when value="targets_file"> <expand macro="macro_targets_file"> - <optional>true</optional> </expand> </when> </conditional> |