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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit 4d77c1e4bd9f6876ee338858a8cd4c7e9528d54c |
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modified:
biom_add_metadata.xml macros.xml |
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| diff -r 0b3c3ad92827 -r 6ef0b5664c69 biom_add_metadata.xml --- a/biom_add_metadata.xml Sat Jan 21 11:16:40 2023 +0000 +++ b/biom_add_metadata.xml Wed Sep 13 18:53:16 2023 +0000 |
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| @@ -38,16 +38,16 @@ ]]> </command> <inputs> - <param name="input_fp" argument="--input-fp" type="data" format="biom1" label="BIOM File"/> - <param name="sample_metadata_fp" argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" /> - <param name="observation_metadata_fp" argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/> - <param name="sc_separated" argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" /> - <param name="sc_pipe_separated" argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/> - <param name="int_fields" argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" /> - <param name="float_fields" argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" /> - <param name="sample_header" argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" /> - <param name="observation_header" argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" /> - <param name="output_as_json" argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" /> + <param argument="--input-fp" type="data" format="biom1" label="BIOM File"/> + <param argument="--sample-metadata-fp" type="data" format="tabular" optional="True" label="Sample Metadata Tabular File" /> + <param argument="--observation-metadata-fp" type="data" format="tabular" optional="True" label="Observation Metadata Tabular File"/> + <param argument="--sc-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons" /> + <param argument="--sc-pipe-separated" type="text" value="" label="Comma-separated list of the metadata fields to split on semicolons and pipes (|)"/> + <param argument="--int-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to integers" /> + <param argument="--float-fields" type="text" value="" label="Comma-separated list of the metadata fields to cast to floating point numbers" /> + <param argument="--sample-header" type="text" value="" label="Comma-separated list of the sample metadata field names" /> + <param argument="--observation-header" type="text" value="" label="Comma-separated list of the observation metadata field names" /> + <param argument="--output-as-json" type="boolean" checked="True" truevalue="--output-as-json" falsevalue="" label="Write the output file in JSON format (biom1)" /> </inputs> <outputs> <data format="biom1" name="output_fp"> |
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| diff -r 0b3c3ad92827 -r 6ef0b5664c69 macros.xml --- a/macros.xml Sat Jan 21 11:16:40 2023 +0000 +++ b/macros.xml Wed Sep 13 18:53:16 2023 +0000 |
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| @@ -6,7 +6,7 @@ </requirements> </xml> <token name="@TOOL_VERSION@">2.1.14</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.05</token> <xml name="version_command"> <version_command>biom --version</version_command> |