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Commit message:
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 6ef4ff4524ca tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Oct 07 19:35:32 2014 -0400 |
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| @@ -0,0 +1,42 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.7.1"> + <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="fastcluster" version="1.1.13"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://cran.r-project.org/src/contrib/fastcluster_1.1.13.tar.gz</action> + <action type="shell_command">cd src/python</action> + <action type="set_environment_for_install"> + <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="lapack" version="3.4.2" /> + </repository> + <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.7.1" /> + </repository> + </action> + + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action language="cheetah" type="template_command"> + export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && + + export PATH=\$PATH:$env.PATH_NUMPY && + export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && + + python setup.py install --install-lib $env.INSTALL_DIR/lib/python + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_FASTCLUSTER_LEARN">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme> + Compiling fastcluster requires a gcc, numpy. + </readme> + </package> +</tool_dependency> |