Repository 'delly_call'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/delly_call

Changeset 3:6f383714149d (2021-12-14)
Previous changeset 2:9946bd542898 (2021-01-22) Next changeset 4:c34eab9d5134 (2022-06-27)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/delly commit d76130cdcb21f0390b4e68e733d38575fd5cc6c7"
modified:
call.xml
macros.xml
b
diff -r 9946bd542898 -r 6f383714149d call.xml
--- a/call.xml Fri Jan 22 14:31:44 2021 +0000
+++ b/call.xml Tue Dec 14 19:05:58 2021 +0000
b
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
 <tool id="delly_call" name="Delly call" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="18.01">
     <description>and genotype structural variants</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
b
diff -r 9946bd542898 -r 6f383714149d macros.xml
--- a/macros.xml Fri Jan 22 14:31:44 2021 +0000
+++ b/macros.xml Tue Dec 14 19:05:58 2021 +0000
[
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">0.8.7</token>
+    <token name="@TOOL_VERSION@">0.9.1</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">delly</requirement>
-            <requirement type="package" version="1.10.2">bcftools</requirement>
+            <requirement type="package" version="1.12">bcftools</requirement>
         </requirements>
     </xml>
     <xml name="version_command">
@@ -16,7 +16,11 @@
             <citation type="doi">10.1093/bioinformatics/bts378</citation>
         </citations>
     </xml>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">delly2</xref>
+        </xrefs>
+    </xml>
     <!-- command -->
 
     <token name="@BAM@"><![CDATA[
@@ -148,4 +152,4 @@
     <token name="@REFERENCES@"><![CDATA[
 More information are available on `GitHub <https://github.com/dellytools/delly>`_.
     ]]></token>
-</macros>
\ No newline at end of file
+</macros>