| Previous changeset 9:db32bb7bda01 (2018-12-11) Next changeset 11:6bba3e33c2e7 (2024-03-09) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit e3881f05134c6f50889d0376d27e1c232251f8b3 |
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modified:
RepEnrich.py edger-repenrich.xml repenrich.xml |
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| diff -r db32bb7bda01 -r 6f4143893463 RepEnrich.py --- a/RepEnrich.py Tue Dec 11 12:50:46 2018 -0500 +++ b/RepEnrich.py Tue Feb 05 17:20:55 2019 -0500 |
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| @@ -400,8 +400,8 @@ repcounts = {} repcounts['other'] = 0 for key in counts.keys(): - convert(key) - repcounts[repname] = counts[key] + convert(key) + repcounts[repname] = counts[key] # building the total counts for class enrichment... for key in reptotalcounts.keys(): classtotalcounts[repeatclass[key]] += reptotalcounts[key] |
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| diff -r db32bb7bda01 -r 6f4143893463 edger-repenrich.xml --- a/edger-repenrich.xml Tue Dec 11 12:50:46 2018 -0500 +++ b/edger-repenrich.xml Tue Feb 05 17:20:55 2019 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.3"> +<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.2"> <description>Determines differentially expressed features from RepEnrich counts</description> <requirements> <requirement type="package" version="3.16.5">bioconductor-edger</requirement> |
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| diff -r db32bb7bda01 -r 6f4143893463 repenrich.xml --- a/repenrich.xml Tue Dec 11 12:50:46 2018 -0500 +++ b/repenrich.xml Tue Feb 05 17:20:55 2019 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="repenrich" name="RepEnrich" version="1.6.0"> +<tool id="repenrich" name="RepEnrich" version="1.6.1"> <description>Repeat Element Profiling</description> <requirements> <requirement type="package" version="1.2.0">bowtie</requirement> |