| Previous changeset 7:9c72c51d858d (2016-04-18) Next changeset 9:f561ac1afa70 (2016-04-18) |
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Commit message:
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modified:
CRAPomeQuery.py |
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| diff -r 9c72c51d858d -r 6fe48eb42c55 CRAPomeQuery.py --- a/CRAPomeQuery.py Mon Apr 18 12:21:20 2016 -0400 +++ b/CRAPomeQuery.py Mon Apr 18 12:23:24 2016 -0400 |
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| @@ -5,6 +5,12 @@ @author: brentkuenzi """ ################################################################################ +## Dependencies ## +import urllib2 +import sys +import numpy +import os +################################################################################ # This program will read in a SAINT formatted 'prey.txt' file or a file # containing a single column list of uniprot accessions (e.g. "P00533" or # "EGFR_HUMAN")query the CRAPome database (v1.1), and return a file specifying @@ -25,12 +31,6 @@ species = sys.argv[2] # HUMAN or YEAST db_path = sys.argv[4] ################################################################################ -## Dependencies ## -import urllib2 -import sys -import numpy -import os -################################################################################ ## Global Variables ## if species == "HUMAN": database = str(db_path) + "Human_CRAPome_v1-1.txt" |