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Commit message:
Upload ctat tools. |
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added:
ctat_bash_command_executer.py ctat_concatenate.xml test-data/Sp_ds.left.fq test-data/Sp_ds.right.fq test-data/Sp_hs.left.fq test-data/Sp_hs.right.fq |
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| diff -r 000000000000 -r 702a3586942a ctat_bash_command_executer.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ctat_bash_command_executer.py Tue Jul 17 11:48:23 2018 -0400 |
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| @@ -0,0 +1,43 @@ +#!/usr/bin/env python + +import sys, subprocess, os + +def stop_err( msg ): + sys.stderr.write( "%s\n" % msg ) + sys.exit() + +def __main__(): + # Get command-line arguments + args = sys.argv + # Remove name of calling program, i.e. ./stderr_wrapper.py + args.pop(0) + + # If there are no arguments left, we're done + if len(args) == 0: + return + + # If one needs to silence stdout + #args.append( ">" ) + #args.append( "/dev/null" ) + + cmdline = " ".join(args) + + + try: + # Run program + err_capture = open("stderr.txt", 'w') + proc = subprocess.Popen( args=cmdline, shell=True, stderr=err_capture, stdout=sys.stdout ) + returncode = proc.wait() + err_capture.close() + + + if returncode != 0: + raise Exception + + except Exception: + # Running Grinder failed: write error message to stderr + err_text = open("stderr.txt").readlines() + stop_err( "ERROR:\n" + "\n".join(err_text)) + + +if __name__ == "__main__": __main__() |
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| diff -r 000000000000 -r 702a3586942a ctat_concatenate.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ctat_concatenate.xml Tue Jul 17 11:48:23 2018 -0400 |
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| @@ -0,0 +1,66 @@ +<tool id="ctat_concatenate" name="ctat_concatenate" version="1.0.0" profile="17.05"> + <description> concatenate datasets from tail to head</description> + <requirements> + <requirement type="package" version="2.7">python</requirement> + </requirements> + + <command detect_errors="exit_code"> + <![CDATA[ + python $__tool_directory__/ctat_bash_command_executer.py cat + $input1 + #for $q in $queries + ${q.input2} + #end for + > $out_file1 + ]]> + </command> + <inputs> + <param name="input1" type="data" label="Concatenate Dataset"/> + <repeat name="queries" title="Dataset"> + <param name="input2" type="data" label="Select" /> + </repeat> + </inputs> + <outputs> + <data name="out_file1" format="input" metadata_source="input1"/> + </outputs> + + <tests> + <test> + <param name="input1" value="Sp_ds.left.fq"/> + <param name="input2" value="Sp_hs.left.fq"/> + <output name="out_file1" file="Sp.cat_ds_hs.left.fq"> + <assert_contents> + <has_line_matching expression=".+" /> + </assert_contents> + </output> + </test> + <test> + <param name="input1" value="Sp_ds.right.fq"/> + <param name="input2" value="Sp_hs.right.fq"/> + <output name="out_file1" file="Sp.cat_ds_hs.right.fq"> + <assert_contents> + <has_line_matching expression=".+" /> + </assert_contents> + </output> + </test> + <!--TODO: if possible, enhance the underlying test code to handle this test + the problem is multiple params with the same name "input2" + <test> + <param name="input1" value="1.bed"/> + <param name="input2" value="2.bed"/> + <param name="input2" value="3.bed"/> + <output name="out_file1" file="cat_wrapper_out2.bed"/> + </test> + --> + </tests> + <help> +.. class:: infomark + +Combine left and right reads of paired ends for different conditions into a single target for Trinity assembly. + +If you are following the Trinity RNA-seq protocol please go here_ for a galaxy tool walk through or the Nature Protocols paper_. + +.. _here: https://github.com/trinityrnaseq/GalaxyTrinityProtocol/wiki +.. _paper: http://www.nature.com/nprot/journal/v8/n8/full/nprot.2013.084.html + </help> +</tool> |
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| diff -r 000000000000 -r 702a3586942a test-data/Sp_ds.left.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Sp_ds.left.fq Tue Jul 17 11:48:23 2018 -0400 |
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| b'@@ -0,0 +1,406308 @@\n+@61G9EAAXX100520:5:100:10001:20086/1\n+AACAAAAATTCATTTCATTTCTTCCAGCATAAATGAAGGTAACTATAAACATGCACAATTTTAAAACC\n++\n+GGGGGGGEGGGGGGGGEGGGGGGGGGGGGGDDFGGGGGFDGGGGGGGEFE?EEEEFEAFDFGE?EBC:\n+@61G9EAAXX100520:5:100:10002:14745/1\n+GGTAGTAGTAGCAGCAGCATTTGTGGAAGCTGAAGTAGGCAAGGTGCTGGGAGTAGATTCAACAGCCT\n++\n+EEEEEEFFCFFGGGFGFFEFGFFDEECEDCDCC?C=A;C@BAAA9CAACCC?C6A=36?8<?:?5<=@\n+@61G9EAAXX100520:5:100:10007:9987/1\n+TTCGAAGCACATTTGCAAGAAGAGCACTTGCAGTTATCAACAGCGCTGCTCTTGCAACCACAAGACTC\n++\n+GGGGGGGGGGGGGGGGFFGGGGEGEEGGGGGGGGGGGFFGFGFFCGEFEEEEDEEECDDDBCCDCBDC\n+@61G9EAAXX100520:5:100:10008:6997/1\n+GTGGCAGAGCTATAGTCGAGGTTGGCGGGTTGAGGAGGATGAGAGCGTTTAGCGTTAAGGTCTTGAGT\n++\n+GGGFGGGGGGGGGDGFEGEGFCFFFEEEE:B@@AA=AA=???=:?ACACBABAC?B<=AA:????###\n+@61G9EAAXX100520:5:100:10022:7766/1\n+CCATGATTTAAGAAAATTTCCAGCGATTTCCGCAAACAGTACATTCACAAAACGTTGTCATAGGCTCA\n++\n+GFFGGGEGGGGGGEFDGGGFGGGGGDGGGDEEGFAGDFGDGEDGFBFEFEEFEF?E=EEC?ECADFF:\n+@61G9EAAXX100520:5:100:10038:8120/1\n+GGGGCATGTAACATTGGTAGCATAATCGCAACCAGAGCTAGAGCAGTTGAAACGTCCAATTTCGGCAA\n++\n+GGGGGEGGGGGGGGGDGEGGFGGGGGGGGFDEGFFBDFFEE@FE@ECEEDD?DD@DDC@CCCD=CCBB\n+@61G9EAAXX100520:5:100:10040:13843/1\n+GAAGAGATGGGTTGAGGCAAAACAGCCAAAACAGCAATACCTACACAACTAGGGTTACCGTTTCCAAC\n++\n+GFGGGGGGGGGFGGGFGGDGFGGGGFDFFFGFFGFEEFEFEGGFDFEEEBEEEDBFFDDFCCDCCCDC\n+@61G9EAAXX100520:5:100:10049:7894/1\n+CGAGCTTCTAAGGAGCTGCAAAATTGTCGGAATGTAAACAGTATCCGATTTAACTCGTCTAACATTGA\n++\n+GGGGGGGGGGGGGFGDGGGGGGGGGFEGGGFFGGEFBFFFEDEFEEECEEEEFDBEDCDECDACDDDD\n+@61G9EAAXX100520:5:100:10051:12228/1\n+CCAGGGAGTTCTACATCAACGCTAACAGTGTCTTTACCCTCATGCACATCAATCGAAGGAGACAACTC\n++\n+GGGGGGGGGGGGEGGGFGGGGEGFFGGGEEFGGGGFGEFGFFGFGFFFFEEFGGEEEDEEFEEEEEDE\n+@61G9EAAXX100520:5:100:10052:20919/1\n+GAAGAGAGTAAGCATAAGACTCCAAGTGGTTCTTGGCTTGGATACGACCGGACTCGGCCTCATCCTCA\n++\n+GFGEGGGGEGGGGFGFEGEDGEEBDECDFBEDCEBDCDE=E?B=CC:CC:C?AAC=?7A99)@@@B?B\n+@61G9EAAXX100520:5:100:10057:19254/1\n+AACGAATGTACATAGCACGACGTGAGGCCTCAGCAACAGAAGACGATATGTAGGGCTCTGGTGAGATT\n++\n+CC?=CC??=C7BB#######################################################\n+@61G9EAAXX100520:5:100:10059:10819/1\n+GTCTTGTTAGCAGTATTGTCGTTGCCATAGGAGCCTCCACGATGCTCAGTACCATGAGAACCACCATG\n++\n+GGGGGGGGGGFGGFGGGGFGGGGGGGFFBFFDFGFFFEEFEEDEEEECDCECDDDEDDCDCDBEC@DD\n+@61G9EAAXX100520:5:100:10066:12416/1\n+GCGGAAGACGAGTGATACAAAGCGCTGGCGTAAAAGTCCTTACCCAAGTCTACGAATCTAGTTTGGCC\n++\n+GGGGGGGGGGFGGGGGEGFFGGGFGFFBEGDFDEEEDDEFEFDDEC=EAEEDDEC?ECECEACDA?CA\n+@61G9EAAXX100520:5:100:10092:5201/1\n+GCTCTGACCAGCGTTGGTTACCCTCGGTGCTTTCATTCTTTCTCTCATTGACGACTTCGCCAGAAATA\n++\n+GGGGGGGGGGGFGFGGGFGDGGGGGEFDFGFFGBDGEEEGGBGFE?DEEBBCADDDECCCB?B=ACDD\n+@61G9EAAXX100520:5:100:10098:17500/1\n+CTGGAGTTCATAATACTTTAAACTCGTAAAGTTAATCCCTCAAGAGGATCGGCTTCTTCAAAGAAACT\n++\n+GGGGGGGGGGGGGGGGGGGGGFGFGGFGFFGEGGGGGGGDGFFEDDEGBFDEECECCE@C@A-???7@\n+@61G9EAAXX100520:5:100:10102:2538/1\n+TGGGATGGTAGTGTTACGCTTGATAAGGGGAGTCATGACACCACCAGCAGTCTCGATACCCATGGAAA\n++\n+GGGGGGGGEGGEGEGGGFFGGGGGGEDEDDDECDEEEEEFFDFDDDDDDDBCDDDDCCCBDACCC>?2\n+@61G9EAAXX100520:5:100:10131:15928/1\n+GAGAAGGACAAGCAACGGCGGATTCAGTTCCATTATATTTTAAGCTATATCCGGAACTAATAGCCTCA\n++\n+GGGFGGEGGGGGGGGGGGFGGD?DECC@EBF=DFEEDBFFE?FEC?CCCE-@=@=EACCBCCC?DCA=\n+@61G9EAAXX100520:5:100:10132:12752/1\n+CCCAGCTTTTCAACCATGCCAGGAGGAAAGAGACGAGAGGCAAATGCTCGACGGAAAATAGCACTGAA\n++\n+BEEEDFDFFFFDEFEFDBFFBFDDFFFDEFFDFFFEF?EFDFF?FEF?FBBB?BE:B5AAEB?EEA?5\n+@61G9EAAXX100520:5:100:10136:10293/1\n+CTCAAAAAGTTGTCGTCCCTTTTTTTCAAATAAGAACCATACAATAAAAACCTTTTTTCATAACGGAT\n++\n+GGGGGGGGGGGGGGGFFGFGGGGGGGGGGGGFGDBCFFEGEFFDGGFFEEBDDFEFDEFDA:BBB?DF\n+@61G9EAAXX100520:5:100:10136:15071/1\n+GCAACGACGCTAGAAGCAGAAGGACTGGGTCCAACATATGTGGTAGTTTTAGTAGTAGTGGCAGTGGT\n++\n+GEGGGGGGGGGGGGGGFGEGGGGGGGFFGEEGGGGGG?FGEGEDAECEEEDDDDEDDDDDEECB<<-?\n+@61G9EAAXX100520:5:100:10139:16589/1\n+GCGAGCTTATTTTCCCATAAAACTGCGTTAACAAAAGCAAATTTGCCTCGCTGTCCAAGATAGGAGTC\n++\n+GGGGDGGFFGGGGGGGGFGGEGFGGAEGFGGDGGGCGEGFCGGEGDDGFDFGDG?F=DAEABEEEFEB\n+@61G9EAAXX100520:5:100:10144:17038/1\n+TCTTGTAGGTGGCATCGGCAACAGCGGCTTCATGTCTGGCACGCTCCAATTCCGCACGGGCACTGTCG\n++\n+GEGGGGGGFDGGFGFGFGGGFFGGFGEDEDEEGFFGBFEFFEBEEEE5EEEEG=EDED?CBBC=C<CC\n+@6'..b'\n+GGGEDFGBGGGDGGGG?GGGGGGFGFF=FGFEBFECGDDEDEBEECCDDDDC?EDCDBC9CC=@:A@@\n+@61G9EAAXX100520:5:15:7522:7787/1\n+CGATGGGATCGCAAGTGACGGCATAGGAACCGTTGCTATCAACTACGATAAGATCCTCCTCTTCTTCA\n++\n+GGGGGGGGGGGGFGFDGGGGGEGGGGDEGGFGDFEEEEFEDEDEDDECDEDCCCCCDBCAACDADAB4\n+@61G9EAAXX100520:5:15:7527:19611/1\n+GGTATGGGAGCCAGAGCTTGAATAATCATAGGCACCACCACCGACTGTGTCAGAAGGAGTTGCTTTTT\n++\n+FFDFFGEGGFGGFFEFEFGFEFGFFFEEDEDDEDDCDDDDDDCCBBBBCBCCBBCBCBCBCC:A4?6A\n+@61G9EAAXX100520:5:15:7529:7196/1\n+CCCGGATCCAATGTCTGTTCCCATGTCGTTAGCAGCACGACTAGAATTGCTGGGAATTTCAGATGTGT\n++\n+GGGGFGGGGGGGGFFGGEGGGFGGFDFGDEEDEEEFDEEDDDDDCCEDDCCDD@CBDDBCBCADBCE?\n+@61G9EAAXX100520:5:15:7530:2166/1\n+CACAAAGCGATTTGGGCAAGGACCTGGTTAGTGAAAGAGCAGGACATAACAAAAGAGGGATGTCCGGT\n++\n+GGGGFGGGGGGGGFFGGGFGFDEEFGGDFDGDFEDFEEFEEDDADDEDDECBD@AACACCADA:CA?7\n+@61G9EAAXX100520:5:15:7536:4379/1\n+TGAAATAAGCGGGAACAGTAACAACGGCATCGGTGACTTTGCCACCCAAAAAGGCTTCTGCGCTTTCA\n++\n+GGGGGGGGGGFGGEFGEGDDFGFEFEDBDEDDCCD@CDECDD?BCCCDCDCCB?BCBBB=B?BBB9<4\n+@61G9EAAXX100520:5:15:7537:16616/1\n+ATGTATTCAAGGTTTAAATCCTGAAGGGTCTTTTCAAGTGCCCACGGAACCAGTCCCGCCCGATGTGC\n++\n+FGGFBGGGGGFGBFDGFGGGFGDFGGGDCGGDGFDD?F@BC:-ABEBABEDDCA@EECBE8<C5C=?:\n+@61G9EAAXX100520:5:15:7541:11035/1\n+GCGATCTGCATCAATCTTGGCTGGAATAGTAATGGTACGAGAGAATGAGCCAAAGCGACGCTCTGACC\n++\n+GFGGGGGDGGDGGGGGGGGGGGGGGGGGGFGGFADDFB=GDED?EFBBD5B=C?C=CD@@:BC=A@9B\n+@61G9EAAXX100520:5:15:7542:2217/1\n+ACGAAAAAAAAAGGAAAACATTTAGACATTGACACGAGTGGAGGACCATTGTTTCGTGTTTAGATCTC\n++\n+GGGDGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGFFGGCFFEGEDDDDBADAEDCBCCCEDAA*CAA?\n+@61G9EAAXX100520:5:15:7568:1583/1\n+TAGGAGGTGGAGTAGAGGTAGAATTATGATAGGAAGAGGTAGTACTATTATAAGTGGAAGATGAAGAG\n++\n+GGGFGGFEGGEEEEEDFFEFEEEEEGGGEGGFGDEGDFFBDFA?CEDFDDGDCECD??@EC@DA@B5C\n+@61G9EAAXX100520:5:15:7569:9200/1\n+CCATATCCAACAATTTCTTCCTTCACGTTCAATTAAATCTCTCGTAACTTCTGCATCGTCTCTTTCTT\n++\n+GGGGFGGGFGGGGGGGGGGFGGGGGGGEGGFGFEFFGGGGDGGFDFDEFFFGDEEGEEEFGFGDDBE<\n+@61G9EAAXX100520:5:15:7580:10493/1\n+CACGGCTTCAGCAGCATACCATTTAAGATATCCGCTACATGTGGTGACCTCCATCTCAGCTTGGCTCA\n++\n+GGGGGFGGDFFDEGGFFDFGBFFFEFBAEBDBFBEDGEDEEBDDBD@ADBEDBA@DB@@BBB5B?9?@\n+@61G9EAAXX100520:5:15:7582:15825/1\n+CCGGCATTGGCTTGAGCCAAACGGTGCTTCAACTCGGCCTCGCGCAAGGCGGTAGCCGCACGTTCGGC\n++\n+EEEEEEEEEEEEEABE?ECEEAEE?DCDE=EEEEEDEEEEDEEED@B@DDBB/BB?2???>54:>??@\n+@61G9EAAXX100520:5:15:7592:19948/1\n+TATTTGTGTAACCCCAACGACATGAGTGGTAACCCAATGTCCAATATTGATGCATAGCAGGCTTTCCA\n++\n+GGGGGGGGFGGGFGGFDGGGGGGGGGBGFEFGFDBFDEEDCDBCEDEDB5DB?ACC=??CBB>?BBBA\n+@61G9EAAXX100520:5:15:7594:18116/1\n+TTTCATTCTTTCTCTCATTGACGACTTCGCCAGAAATAGTAAGTTTTCCGCTATCATAATGGACTTGA\n++\n+GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGEFFFGGDFGFDDEGBE?GGFFFFFEFECAFB5DDB\n+@61G9EAAXX100520:5:15:7597:12745/1\n+TCACGAACACGTAAAAATCCGGATACAGGCGTCGATACTTCGATTCGCCTGTAAAGGAATTCAGCAAT\n++\n+GGGGFGFGGGGGGGGEFGGGGGGGGFGEEFDCDDCDCDECDDCCCCCCBCCBDCC@AACDC?ACCCA?\n+@61G9EAAXX100520:5:15:7598:19615/1\n+CGCTGTTCCTGCAAAATAAAGGAGGAAAGTGTGACAATGTCAGTATCGATTTCGTCGAGATCTTTTTT\n++\n+GFGEGGGGGGGGFGGFGFGGGFGGGFGGGDFBF?FFFGGEGBGDAGEEEDD=EADDDBDBBBBD=B97\n+@61G9EAAXX100520:5:15:7601:1339/1\n+AGCAGCATTTGTGGAAGCTGAAGTAGGCAAGGTGCTGGGAGTAGATTCAACAGCCTTTGTCGTACTAG\n++\n+GGGGG=GGDGFGGFFFGEEFDAE:B?B?CBAA?=:?@@??@7:?:=>2::?@55?AAA?A########\n+@61G9EAAXX100520:5:15:7604:8268/1\n+GGTTTTACGACTTTGGTTGTATTGGCTTTGGCCGTAAGATGCAGTATCATCTGTACGACTAGGGTCGG\n++\n+DACEEEEEEEFFFFF=BEECCEEECCE:EEBB?CCEEA?=E5E?B?5???CBB?BEB@=@7=?579<;\n+@61G9EAAXX100520:5:15:7609:13571/1\n+CTATATTGTTTAAATTCAAAATCAAATGCTTCGGTCTGTTCAAGTTGACGCCTTTGGACCATTAGTTC\n++\n+GGGGGGGGGGGFGGGGGGFGGGGBGFFDBGGFGEEFBDFE5AAB=AAAA5DBEDED:D?BBBBBA9BB\n+@61G9EAAXX100520:5:15:7619:20314/1\n+CCCCGGATCCAATGTCTGTTCCCATGTCGTTAGCAGCACGACTAGAATTGCTGGGAATTTCAGATGTG\n++\n+FFFEFDDFFDCFFDEFFFEFFFFFBFFFEEFFE=A5:-AAABB@B5?B=BBBBBB=,@@BB@5@B@?E\n+@61G9EAAXX100520:5:15:7647:6829/1\n+GCGGGAACAAAGGATATACAGCAGCAGAAGGTGATGGAGTTGCAGCTTCACTTTGGCTAGCGGCAGGG\n++\n+GGGGGGGGGGGGGGGGGGFGGGGGGFFFFFGCGEGFFGGEEGGEGFDEDDEDDED?ECBCCCD@####\n+@61G9EAAXX100520:5:15:7675:19012/1\n+CTCGGTCGGCTTCCTCATATGTGACGTTGAGGAACAACAATGGGTAATCAGTACCATAGGCATAGCAA\n++\n+GGGGGGGFEFGGEGGGE?FGGEGFEGCFFEFDFA@FEEDDCCDEBDBCCDCBADDA@@ACBCBB???:\n' 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| diff -r 000000000000 -r 702a3586942a test-data/Sp_ds.right.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Sp_ds.right.fq Tue Jul 17 11:48:23 2018 -0400 |
| b |
| b'@@ -0,0 +1,406308 @@\n+@61G9EAAXX100520:5:100:10001:20086/2\n+GTGTTAAATACTTGGAGGAGAACTTTGGCGCTCTCAAGGTTAAATTATCCGATGCCACTGTTAAGGAA\n++\n+GFGGGGGGGGGGGGGDGGFGGGGGGGGGGGGGGGGGGGFDGGGGGGGGDGGBFGFFEDGGBEEEBEDG\n+@61G9EAAXX100520:5:100:10002:14745/2\n+TGAACCTACTGATGTTAGTACTAAGAGCAAGTCCGCCGCCTATCACTATCCTGCCACCACTGAGACTG\n++\n+GGGEGGGGGGGGGGFGGGFEGGGGFEGGGGGFGGGGGEGGFGGGGFGGDFGFFG?FGFFGEBGBFEDG\n+@61G9EAAXX100520:5:100:10007:9987/2\n+ATCGACTTTCAACAACTCATATCACCCTAACAAACTTTCAACGATGGAACACACTACCCAATGTAAGA\n++\n+GGGGGGGGGGGGGGGGFGGGGGGGGGGGFDGGFGGGGGGGFGFGGGEGGEGFGGGGGFGEGDFFFGFE\n+@61G9EAAXX100520:5:100:10008:6997/2\n+GGAAATCACTCGTTGTGCCACTCAAGCCTATGATGCCGTCAAGGCCGCTGAGAAGCGCAATGAAACCA\n++\n+GGGFGGGGGGGGGGGFGGGGGGGGGGGGGGGGGFDGGFEFFEDCGGEEEEDDFGCGEEEGCDEEFCEE\n+@61G9EAAXX100520:5:100:10022:7766/2\n+AAAAATAACCCGAAACTTAGAGCATCAGTATTACGAAATGAAATTACTCCGCAAAGACTCAGTACCAT\n++\n+EGGGGGGGGGGGGEGGDGGGGGGEGGGGBGGGGGGDDGFDEFFGGFEGGDBGEFBFEEBDEFCEDFF?\n+@61G9EAAXX100520:5:100:10038:8120/2\n+TGTATATCCTTCGTTCCCCCATGGCATTCGTTTAATTGATTCGACTAAGCCTGAAGCTAACTCCGGTA\n++\n+GGFGGGGGGFG:GEGGGGGGEGFGFFGGGGDEFGGFFEFFGEGGFGGFEGEDEFBEGCEDBEEFDDCE\n+@61G9EAAXX100520:5:100:10040:13843/2\n+GTATTCTTTGGAGTTGGAAACGGTAACCCTAGTTGTGTAGGTATTGCTGTTTTGGCTGTTTTGCCTCA\n++\n+GGGGGGGGGGDFGFGGGGDGGGFFGDGGGGEGEGGEGDFFGBFGFFFGGEFFGEEEFGDFFEEDEEDD\n+@61G9EAAXX100520:5:100:10049:7894/2\n+GAGACAATGATAATAAAAGGTGAGGAATCACTAAAAAATCTTCAGCGAGCGCGAGATGGTCCTCACAA\n++\n+GGGGGGGGGFGGGGGGGFFFDGDFGGGGGFGGGGGFGGGEFGGFGDEGGEGAGDFFFBFDEEGFEEAE\n+@61G9EAAXX100520:5:100:10051:12228/2\n+TTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTGCAACCTTTTTTCGGCTTTCCCCCT\n++\n+GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGFGGGGFGGGGFGGGGGGGGGGGG=GGFGGEEFGFA\n+@61G9EAAXX100520:5:100:10052:20919/2\n+CTCGTACCAAGGACTGTAACTTGCTTGGTAAGTTTGAGCTTTCCGGTATCCCCCCTGCACCTCGTGGC\n++\n+FFFFDDGFGGGGEGGFGGG?GGGGGDFGDFFGEGFECFFGAGGGGDCDGEGGGFG=:C@CE:CC,A>5\n+@61G9EAAXX100520:5:100:10057:19254/2\n+GTGATAATCATTCTCTATGGTCTAACATGTTCTTCTCCATTTCTGGAATGATCGTTTTTAACATGATG\n++\n+5>>>A3=6>;?8=@?CA=?AC5:A?A:B-ACBB=DBD5DADCDD;.6;B;.C@@CDDD;6?AAC5-C:\n+@61G9EAAXX100520:5:100:10059:10819/2\n+CCAAAGTCGTAAAACCACCCAAGGTGGTGACTACGGTGAAGATTACAGTCAAAGTTACCCCACTGATA\n++\n+GGGFGGFGFEEGGGFFGFFGGGGAEFFDFFDGGGGGEGBGFF:FBFFFEFDFEFB=ECEEGGFFAEB5\n+@61G9EAAXX100520:5:100:10066:12416/2\n+CCTGGAATGGCTCGTGTGCCCGTTTAAGGCACCGATGAATAAAAATGGGTAATCTTTATCTCCATCAA\n++\n+CCCCCCCCCCCCC4=>4@)>B###############################################\n+@61G9EAAXX100520:5:100:10092:5201/2\n+CTGTCAACGACTTGTTCTCTGACTTTGTTAGTTACTCCCCTCGTTTGAACAACCAAATTCCTGGGGAG\n++\n+GGGGGGGGGGGGGGGGGGGGGFEFGGGGGGGGGGGGGGGGGGGDFGGFCGFFBGFGFFEEGGEEEBDB\n+@61G9EAAXX100520:5:100:10098:17500/2\n+GTCTACTCCAACCGTCCCAACCGCATTGCCGAAATTGGACGTTTCAACTGCTCTAGCTCTGGTTGCGA\n++\n+GGGGGGGGGGGGGGGGGGGFGFGGGGGGGGGEGGGGGFGGDEFGGCGCGFGFGFGEGFGEFFCDEFE=\n+@61G9EAAXX100520:5:100:10102:2538/2\n+CACCCGTATTCCCCGTGTTCAAAAGCTTGTCTCTGACTTCTTCAACGGTAAGGAGCCTTGCAAGTCCA\n++\n+GGGGGGFGGGGFGGGFGGGGGGFEGGGGGEFGGGGFGGGGFGGGFGGFDFFFDDEDGDDEDFDDCGEA\n+@61G9EAAXX100520:5:100:10131:15928/2\n+TCTGGTTCTGTTTACTTGGACCCCGCTGATGGCACTGATGACGCTGCCACCTTTACTATGTCTAATGG\n++\n+GGGGGEGEGGFGGGGGGFFFGGGGGGGFGFGGDDFEGFFGGGFFFGFFGGEGGGD:ECEECFDGFFDE\n+@61G9EAAXX100520:5:100:10132:12752/2\n+TTTCTCCGGGCCAGAAAATTGTTTTCGATTTCCGTTCTTACAATATAAAGGCAACCGTCCGTACTATA\n++\n+EEDFFFFFFAFFFFBEFAFFFFFFFFFFCEFFFFFBEFFA?EFFDF?FFAFF=DAFDB@FB?5EDDE=\n+@61G9EAAXX100520:5:100:10136:10293/2\n+GCCAAATCTACTGCTGTACGTGATGATGTTTCTTCTGCTTCTTCGGATAGCGACAAGGGTACCACCGG\n++\n+GGGGFGGGGFGGFGGGGGGGGGGGGGGGGGGGGGGEGDGGGGGGGFFFGFGFEEFEEEECEEDGF=EB\n+@61G9EAAXX100520:5:100:10136:15071/2\n+CTCTACCGTTACATCTACCGAAGCCACCACTGTTACGACCACCACAGCTGTCACCGTTACGGCTAATG\n++\n+GGGGFGGGGGGGGGGGFGGGGGFGGGGGFGFGFGFGFDGGGGGGGGFGFGFGGFFFDDDDEEDFE###\n+@61G9EAAXX100520:5:100:10139:16589/2\n+AAAGAATTTGACGAAAATACGTTAAAGTCTGATAAATTTGAAGAAGTAGAATCTCTGGTGTATGAATT\n++\n+GGGGGGGGGGGGGFGGGGFGGGGGGGGEDGGGGGGGGGGGGGGFGGDGEFEGFDEGGGCGDGGGFEGG\n+@61G9EAAXX100520:5:100:10144:17038/2\n+GCCGAACGTGCGGCTACCGCCTTGCGCGAGGCCGAGTTGAAGCACCGTTTGGCTCAAGCCAATGCCGA\n++\n+DGFGGGGGEDGGGFGGGFDGF=DEEEGFD=EBFDD?@DA@B@@BBB?=BC?EBBAAFDDF:E?BEE=B\n+@6'..b'\n+DEDCEE?EDEAEEEEEEEE;CEEEDDEEEEBEAE5EE:5=-::CCBC5=EEE5EEAD=B=CEBABEED\n+@61G9EAAXX100520:5:15:7522:7787/2\n+CTTCAAATTCATCGCCAACACCATTCGTAAAGCAGAGTTGGTAAATCTCATTGGTTTATCGGGAATCG\n++\n+GGGGGDGGGGFGFGGGGGGFGGGFGGGGGGGFGGGEGEGDGEGGFGGGGFGEFGFAGFFEFFD=CGEC\n+@61G9EAAXX100520:5:15:7527:19611/2\n+CACCGACCCTAGTCGTACAGATGATACTGCATCTTACGGCCAAAGCCAATACAACCAAAGTCGTAAAA\n++\n+GGDFDGGGFGGGEGGDGDFGDBEFFGBEEGEEDDDFDDDEC=EE@=EBFCEDCEDADBDC=C?AACCB\n+@61G9EAAXX100520:5:15:7529:7196/2\n+CTTACAATACTACAAATATTTTCATAAAATGTCTTACCAACAACGTGCAAACGATTCTATGAACTCTG\n++\n+GGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGDFDGGFFGGGFGFGEGGGFGFGFBFBEFFFGF=\n+@61G9EAAXX100520:5:15:7530:2166/2\n+TTTGATGTCGAGATCGATGTCGCTTGGTTGAAGGCTAACGCTAAGGATGTTGTTAACATCAAGCCCCA\n++\n+FFGDGGGFGGGGGGGDGFGGDEGGGEGEEFFDEDFGEGFGGGEFGGDFGEGEGGDFEEGFFCFGECA=\n+@61G9EAAXX100520:5:15:7536:4379/2\n+CACTGACACAGAACGATTGATCGGTGATGCTGCAAAAAATCAAGTTGCTATGAATCCTCACAACACTA\n++\n+EGGEGGGEGGGFGFGGGEGGGFGGEGGAGEGFGFEGGEEFEGGGEFGBGEGDFGFFBECAEEE@EEC#\n+@61G9EAAXX100520:5:15:7537:16616/2\n+ATTACTTCTCAGCCTTAATGTCAATTAAAGAATTTGCTAAGAACGCACGTGAAGCTTACTTCACGCTT\n++\n+AGGFBDGGGGGDGGA?GGGGEGDDGGBDGEFAFFDFDFB-CCEEAGGGEEBE?5E@A:E=-D?B:BBA\n+@61G9EAAXX100520:5:15:7541:11035/2\n+CTCCCCTCGTTTGAACAACCAAATTCCTGGGGAGTTGTCTCCTTCGATTGATGTGCATGAGGGTAAAG\n++\n+GFGGGGGGEEGFGFFGFGGGFEBGDGGEGDGGEABFEEGEGAFEDE?EE?ABDA=EB?E@BDBAD@AA\n+@61G9EAAXX100520:5:15:7542:2217/2\n+CCAAATACCAAGGCGATGTGAAGGTGTCACCTTTACCTTCTACCCTCACTGGAAAAGAAGATCCCGGG\n++\n+GGGEGGEGEGGGGFEGFGGGGFGGEGGGEFGGGEDGGGGBGGGFGGGEGFGFEDGEFFD@EBFE?GEG\n+@61G9EAAXX100520:5:15:7568:1583/2\n+CCGGATATAGCTTAAAATATAATGGAACTGAATCCGCCGTTGCTTGTCCTTCTCTCGTCAATAACCAG\n++\n+GGGGGGGGGGGGGGGFGGGGGGGGGGGGGGFDGGGGGGEEGGFGFDDGDEFGEFGGFDGEDEEEFDDD\n+@61G9EAAXX100520:5:15:7569:9200/2\n+AAAATGGCCTGGCAAGCATGCCGACTTAGATCCTGAACCATCACTTCTCAGATATTGTGATGGACGGG\n++\n+FGGGGFGGGFFFFGGGEFGFFDEDFECGFBEFGBF5FEBGDFDBDEEE@D=CACCEB8C@=CCCABAB\n+@61G9EAAXX100520:5:15:7580:10493/2\n+GCCGATGTCTCAGTAGAGGAAACAAAAAAAGCCATCAGTGCCGCTAACGAGGCCTTCAAAACTTATAA\n++\n+GGGGGFGGGGGGGFGGGFGGFFGGFGGGGGGDGGFGGGCGFFGGGGEGGEFEEBFFGBDFFFEEBEFG\n+@61G9EAAXX100520:5:15:7582:15825/2\n+GCTCCACCTCGGAGGCCCTCGAGCTTGAGGCCCGTGCCAAGAAGGCTGCTCAAGACGCCGAACTCGCT\n++\n+GGGGGEGGGGGGGGGGGGGGGGGGGGGGBFDGGFF=EFEFC?EFEE=DDD?AAA5(?A>>BBC?CDD?\n+@61G9EAAXX100520:5:15:7592:19948/2\n+AAAACATGTACGGAAGTCATCCATACTATTTAGAACAAAGATACAAGGCGGATGGTATAAATTCAACT\n++\n+GGFGGGGGGGGGGGGGGGGFGGDGGGGGGGGGD:GGGEGGFEGGGED:GDEEEFFCGGEB,B?D@FCA\n+@61G9EAAXX100520:5:15:7594:18116/2\n+CTTTTTTCGGCTTTCCCCCTACTGTCAACGACTTGTTCTCTGACTTTGTTAGTTACTCCCCTCGTTTG\n++\n+GGGGGGGGGFGGGGGGGGGGDGGGGGGGFGBEGGFEGGGGE=EEFEGBEBEEDABFBFEFDCDBBDE:\n+@61G9EAAXX100520:5:15:7597:12745/2\n+CGAAGATTGGTGAATTGAAAACACAAATATAACCCATCTTTTGAACAGTGAAGATTTTGCAATGATAC\n++\n+GGGGGGGGGGEGGGGGGGGGGFGGGCGGGGGGGGFGGGGGGGGEFGEGDFEBFFGFGFFFF@EE=?CE\n+@61G9EAAXX100520:5:15:7598:19615/2\n+TGGAGAGAGACAACACAACTCATTATTAATTTTTTCATCTTCGTCTCTCTCGTCTCTTATTATATCAT\n++\n+EEEAEDEEEEEEEEEEEEEEEDEDAEEDEEEEEEEEEEEBEEEEEEBEEEE?EEEEDE5CE@E=EEEE\n+@61G9EAAXX100520:5:15:7601:1339/2\n+CGCAGAGCCCTACGCGATGCTCAAGCTGAACAAAGCAAGGTGGAGAGCGAGTACAACAGTGTTAAGGG\n++\n+GGEFEGGGGGGGDGGGFGDEDF5FDFFD:DFE?DDDFEBB@=?4B=BEBBE9?E?@?A?;B<=?=?55\n+@61G9EAAXX100520:5:15:7604:8268/2\n+CGAGAAGACACGATGATTCTTCTTACTCTTCTAACAAGTACTCTACAGGAGGCAATGACAGTTATTCT\n++\n+GGGGGGGGGGFGGGEGGGGGFGGFGGEFGGGGGEGGGAEDGGFGGEGG=GDBGGGD=EFFDBEEE;EE\n+@61G9EAAXX100520:5:15:7609:13571/2\n+CCATTCGCAAGCAATCTAATCACTTTCAGGTTGGAGCACGTCGTCTCCGATTAAAAGATAGTCAACAC\n++\n+EGEGEGFGDDGFGDGGFGGEDGGFDGGFGGEDGBDFFFFFDGGBEEEEEEGFGFFFEB==@>CC####\n+@61G9EAAXX100520:5:15:7619:20314/2\n+GTAAATATTATTCTACTTACAATACTACAAATATTTTCATAAAATGTCTTACCAACAACGTGCAAACG\n++\n+GGGBGFFGDFGFGGGEGEGFFGGGGBGGGGFFGDGGGGGEGBDGFEDGGGFGE?FDADFEAEED5FF?\n+@61G9EAAXX100520:5:15:7647:6829/2\n+CCTCTACCGTTACTTCTACCCAACGTAAAAACACTGCCACTACTACTAAAACTACCACATATGTTGGA\n++\n+GGGGFGGEGGGGGGGGGGGGGGGGGEFDGGGGFGGEGEFGDGGGBFGGCFGFDFGGEFFGFEDCDDDB\n+@61G9EAAXX100520:5:15:7675:19012/2\n+CTACGATTCTTTTTAGTTGGTACTTTGATTTTTCTTAAAACTTTTTGATCTCTTTTTTGTTTTTTTTT\n++\n+GFGGAGGGGFGGGGDFEEFFEEFFFGGGEGGG?GGGAG=AF?FFFGEEAEDGFEGGAGGBACCACC?3\n' |
| b |
| diff -r 000000000000 -r 702a3586942a test-data/Sp_hs.left.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Sp_hs.left.fq Tue Jul 17 11:48:23 2018 -0400 |
| b |
| b'@@ -0,0 +1,430704 @@\n+@61G9EAAXX100520:5:100:10004:15548/1\n+CGCCACGAGGTGCAGGGGGGATACCGGAAAGCTCAAACTTACCAAGCAAGTTACAGTCCTTGGTACGA\n++\n+GGFGGGFGGEEGGFEGGFBF?EGDFFE:GFF:G?EDEDEEECEE:EDE?E=EBBDEABCCACC=BECA\n+@61G9EAAXX100520:5:100:10005:5267/1\n+TCCCATGTTGAACAAAATCAATGGAATATCCATTGAATTCGTAATTCTGGTTCGAAATTCCTCCAATT\n++\n+GGGFGGGGGGFGGGGGFGGGGGGFFGGGGDFFFFFDEEEEFEFFDGGFEBDGBBFBDFEEABFDDA?E\n+@61G9EAAXX100520:5:100:10006:11985/1\n+TCCAGGGAGTTCTACATCAACGCTAACAGTGTCTTTACCCTCATGCACATCAATCGAAGGAGACAACT\n++\n+GGGGGGGGFGGGGGGGFGGGGEFGEFFFGFGGGGGGGGDGGGGGGFDFFGGEFGGE@EEDFDDBEDED\n+@61G9EAAXX100520:5:100:10015:8882/1\n+AAGAAGGGGTAGTGCGGTTACCTTGATCGTTGGCGATAATTTCGACACGGTTGTTGGAAAAGTGTCCA\n++\n+GFGGGGGGGFGGGGGGGGGDGGGGFGGFEDGEFEGEFEEGFEEEBDDDDDCDECEDDA=A=A7A<9@A\n+@61G9EAAXX100520:5:100:10018:4558/1\n+GTTGATAATACGGAGAACGTTCAAACCGGCAATAAGACCAGCATCCTTGGTGGCTTGACGTTGAGAGT\n++\n+FGGGGGGGGFGFGGGGGGGEGGFGGGF=GFGEGEGDFEEGEFBFEBEBDDADAD=CC:CC>CC4=5:2\n+@61G9EAAXX100520:5:100:10020:3719/1\n+TTGAGTCTTCTCAGAAGTGTCACCAGTCAAGACAGCAGCTTGGACGGCAGCACCATAGGCAACAGCTT\n++\n+GGGGGGGGGGGGFFGGGFGGGGGGGFGGGFGFGGGGGFFGGFAEGEEGFEBFBEEEEDEEC5DEB?CC\n+@61G9EAAXX100520:5:100:10036:2238/1\n+GGGGTAGCAAGGTTGTTCATGCGGATCATGTTGTTAACGTTAAAAGCACCAGAAACGTTTTTCAAAGA\n++\n+GGGEEGGGGEGGFGGGGGGGFGFFEGBFFEFFBEFFEDDEDEEBBDDCD?D?CCCB=AADDCCC:CCC\n+@61G9EAAXX100520:5:100:10036:9033/1\n+AGGGACTTCTCGACCTTGGGCAAGGTGACAGTCAATAGGCCATTACTGAAGTTGGCCTCAATGCGATC\n++\n+GGGGGGGGGGGGGGGGGGGFGGGGGDGGGGGEGGGFGEFGEEFFFEEFD@FCEDEEEEECDDEAE=DE\n+@61G9EAAXX100520:5:100:10038:14729/1\n+CAGGTCCATTGTCAGCACCGCCCGGAGCACCACCAGGGGCACCGCCAGGCATACCACCAGGTGCACCA\n++\n+GGGGGGGGGGGGGGGGFGGEGGGGFGEGGGFGGGGEDDDGFFFDFDEDCDADEDDDDEDCC;CADCCD\n+@61G9EAAXX100520:5:100:10042:17662/1\n+TCAGAATCAACAACACCCTTAATGAAACCCAACCATTCAGGAATCAACTCTTCACAGTCGTCGGTAAT\n++\n+GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFEBGGGGEFBEFFFEEFEDEDDFBDCDCD\n+@61G9EAAXX100520:5:100:10045:11664/1\n+CTGTCATTGCCTCCTGTAGAGTACTTGTTAGGAGAGTAAGAAGAATCATCGTGTCTTCTCGAGTAAGA\n++\n+GGGGGGGGGGGGGGGGGGGGGFGGGGGGGGF5FEGGEEFFGDGEFFGGG??DGEDFFGEDBBDDD=EC\n+@61G9EAAXX100520:5:100:10046:4083/1\n+TTGGGGTTAATCTCAAAAGTCTTGCGGCTAGACATATAGGCACTCATAGAAGTATCACGAAGGGCTTG\n++\n+EGGGGGFGGGGGGGGGFGGGFGGFGGGGGGDEGGFFBD@EEFEEEBCECDDCAEDED:DCCC=?B>EC\n+@61G9EAAXX100520:5:100:10048:17127/1\n+TCAATGGCTTCCTTATCTGAAGCATCGACCTTATCCTTGAGATTAGGATCGTCCAAGGAATTACGAAG\n++\n+FFDFFFGGGGDGDGAEDEFFGG=GEGFFFGGGAGDGFEEAED?EEBEDEFGDFGDBEAD?EEB?E@A?\n+@61G9EAAXX100520:5:100:10049:14013/1\n+CTTGAACGTCCTCTTTCTTAACACCAAGGAGTTCTACATCAACGCTAACAGTGTCTTTACCCTCATGC\n++\n+GEGGBGGGGGGGGGFGGGEG?FFFFDEBDEFFGFGGCEGFADEBFFEEEGE@FDBFCEDBDEBFDEE:\n+@61G9EAAXX100520:5:100:10055:6276/1\n+TCCTGGGAGTAGAACTCTTGGGAAGTACAATGAATCCACGCTGTAGACAGTATCTAATCATGATTTGA\n++\n+GGGGGG?GGGGGGGGGGGGEGGFFGGGGGGGGGGGEFGGFGFCDFBEDEFCEFBG=CECECEDA@CDC\n+@61G9EAAXX100520:5:100:10064:17140/1\n+TCAATGGCTTCCTTATCTGAAGCATCGACCTTATCCTTGAGATTAGGATCGTCCAAGGAATTACGAAG\n++\n+>C5>AAA:A>=:DDAAC=-5CCCCCA5AACCC-?,A:BA-D=5BDC-DDD>:B:ACC:-@:CA5A?B?\n+@61G9EAAXX100520:5:100:10072:2848/1\n+TGAGAGATGAACTCACTGTGTTTCTTGACGGTATCTTTGATAGTCTTTTCCTCGAGGTATTGAAGTTG\n++\n+GGFGGGGGGGGGGGGGGFGGGGGFGGGGGGGDFGGGGGGEGGDDGGGGGGGFFGBDFCFEFF:DEAEE\n+@61G9EAAXX100520:5:100:10075:9308/1\n+GGGAATACGGGTGGAACCACCGACTAAAACAATCTCGTTGACGGAGGCCTTGTCGACCTTGGAGTCAC\n++\n+GGGGGGGGGGGFGGFDGGGGGEGGGGFEFFGCGDFFGCEEDDEDCDDDCCDBCD?BCDDCDA@EADC@\n+@61G9EAAXX100520:5:100:10090:12439/1\n+AGAGCGGGCTGCTTTGCTTGAAACAGTCTCAGTGGTGGCAGGATAGTGATAGGCGGCGGACTTGCTCT\n++\n+EGGGGGGGGGGFGGFGGGGGFGFGDDFGGGBGDFGCGEEEGE:DDEBECACCEA##############\n+@61G9EAAXX100520:5:100:10115:15451/1\n+GCGGTCTTCGGCACCATTCTCCTCAACCTTCTTCTTGAGCTCAGCAATGATGGGAGACTTGGGGTTAA\n++\n+GGEDGGGGGGFFDGGFGFGGGGGGGFGGGGGGGGEGAFDEFDAAFDFDEDEDDACEC?CEECEEAECC\n+@61G9EAAXX100520:5:100:10117:17047/1\n+GCCGGAAACTTGAGGAACATCAAATGTGAAAATCGTGTTGGTATGATTGTTTTGCTTCTGAAAGACGA\n++\n+EGGDGEGGGEGGGGGGGGGGGGGGDGFFGGGGGFGEGFGGGCGFGDGGFEFGGEFEEGGGB:AFDEB:\n+@61G9EAAXX100520:5:100:10124:13659/1\n+TTTCCGCTATCATAATGGACTTGAACGTCCTCTTTCTTAACACCAGGGAGTTCTACATCAACGCTAAC\n++\n+GGGGGGGGGGGGGGGGBGGFGGGDGGGFFFGGGGGFGGEFFEEEDEEDCEDDDD?BDEDDBBEEECCD\n+@61G9'..b'+GGGGGGGFEGGGGGGGGGGGGGFGGGGGGDEEDCFGFEFEBEEE=DEEEDBBF:DEEBBC@A?5B&9A\n+@61G9EAAXX100520:5:1:11086:4349/1\n+CTGGAATAGTAATGGTACGAGAGAATGAGCCAAAGCGACGCTCTGACCAGCGTTGGGTACCCTCGGAG\n++\n+GGGGGGGGGGGGGGFEFFGGGGGDGGDDE?FFGB?GEFFE=F=G:BE:B=?C7:@#############\n+@61G9EAAXX100520:5:1:11101:19670/1\n+CTTAATTACTCGATGGAACCTTGAACCTTTGTAGGTTAAACAACGGCCATCCTTCTCACACCCATTAC\n++\n+GGGFGEGGGGEGGFFFDGEEFGD=G?B=GFF?BEEBEEBBB;<BB=BBBAA@=B=BAA5B?=??,:??\n+@61G9EAAXX100520:5:1:11102:11642/1\n+CTCGTTGACGGAGGCCTTGTCGACCTTGGAGTCACGGAGAACACGCTCGACGGGCTCCATGGTTTTAC\n++\n+GGFGGGGGGGGFFFCGEFCBFGDEGGEEGEGDEDEFBBDBFCEE?EEEEDCC?CBDDEBCAA<:5<:>\n+@61G9EAAXX100520:5:1:11104:15532/1\n+CATGAGCTCAGCAATGATGGGAGACTTGGGGTTAATCTCAAAAGTCTTGCGGCTAGACATATAGGCAC\n++\n+GGGGGGGGGGGGGGGGGGGGGGGFGGGFFGGEFFEFBGEEEEDFDBEDD@DCD:5?58AA?A5?9C?1\n+@61G9EAAXX100520:5:1:11108:14219/1\n+GTGTAGAAGTCAATACCCTCGAACAAAGAGTCAATCTCAATGCTAGCTTGAGCAGAAGAAGAAAGAGT\n++\n+GGGGGGGEGFGGGGGFGGGGGGGFGDGDEGDGFCFFBEFEGBEFDGFGEDDDEDDCDECDCDD?DD@:\n+@61G9EAAXX100520:5:1:11110:2201/1\n+CTAGAGATCACTTGCTCATCATTGGAGAATCGTAACAAGTGGTAGTCAAGATCATTAAAACACTGTCT\n++\n+FGGGGGGGGGGGGGGGGGGGFGFFGBG:DFGFDFEFFCEBEECDECBCDD?,@@ACC?5:5??A7:?#\n+@61G9EAAXX100520:5:1:11119:3103/1\n+GGCAGCAGTAACCAAGGCACGGTCAGAGATAGTAACACCATGATGAACCTCACACTTTTCTTTACGAC\n++\n+B?55DBD:D?DDD-=C5?==DADA5=5DAB?C>ACCDCBDBCBCB5BBB:C5-@?5?5B@@821524@\n+@61G9EAAXX100520:5:1:11161:10524/1\n+CCCCTCTCCACTTCACCCAAGGCAGATTTTTTGATTGAATGGTCGTCGAATTTACATTTTCCTGTTTC\n++\n+FGGGGGGFFGGGGGGGGGGFDEGEGDAGGGGGEDGGEFBEDDC5ECAA=5CCCCC:@=AA<CC5A?##\n+@61G9EAAXX100520:5:1:11169:2823/1\n+CAAGAGTGAAACCAGAGGACAACAAGGCGGTCTCATACAAAATAGTAGCAAGATCCTTCACAGAGCGG\n++\n+FEFFFFFAADFFDBFFFB:AEEEEBE=?E?EFFFE?:BA?B<C?36>=>>DDEDBD@?FA:?5????#\n+@61G9EAAXX100520:5:1:11178:16777/1\n+CTTGAACGTCCTCTTTCTTAACACCAGGGAGTTCTACATCAACGCTAACAGTGTCTTTACCCTCATGC\n++\n+GGGGGGGFGGGGGGGEGGGGGFGGFGGEGFGDDGGGFE?GEDEFEF=?DGEBCEEEDEECDEAGDEEB\n+@61G9EAAXX100520:5:1:11179:14447/1\n+GGTTGATGGACTTGCAAGGCTCCTTACCGTTGAAGAAGTCAGAGACAAGCTTTTGAACACGGGGAATA\n++\n+FFFFF?FFEFEFF=BEBEEE?DDFA=ECBADEBDDCB:BBDAEA:CCCCCA?@AD-==5@A=<C####\n+@61G9EAAXX100520:5:1:11182:5055/1\n+TTAACAAGCAAGGAGAACCAACAATCTTGTTAGAAACAACAACCTTTTCAACCTTGTCACCCAAAATG\n++\n+FFGDGGEGGGGFFFGCFGGDGGGGGDGGBFGFCDEBDFFEGEDFEDDFEEECDADDCDDCBDCC??C?\n+@61G9EAAXX100520:5:1:11183:5436/1\n+ATTCAATTGTAGTCCAGACACCGATATGTGAAAGAAATTGGTAAGAAAAAGGAAAATGTTTGCTTTGT\n++\n+GGGGGGGGGGGGGGGFGFGGGGGEGFGEEFFEGGFECGGEECEBFEDD=C@BDDEDDDCDEDBFCBB2\n+@61G9EAAXX100520:5:1:11185:15634/1\n+CTCGAGGTATTGAAGTTGGTCTTCTTTCATGAAGAGACGAATCTCGGTACCACGTAACAAGCGAGGTC\n++\n+GGGFGGGFGGGGGGGGGGGEGGGGGGFGFGG=EGEADCFE?BAEEEDCDDB@CD@==AA?AA5>:?:A\n+@61G9EAAXX100520:5:1:11190:8705/1\n+GGTTGATGGACTTGCAAGGCTCCTTACCGTTGAAGAAGTCAGAGACAAGCTTTTGAACACGGGGAATA\n++\n+EEBEEEEEEBEEEEC?EEDEBEEEEBEEDEEAE?D=B?@=@=?A@@?@:BBEBBB:@?BB???B1=22\n+@61G9EAAXX100520:5:1:11201:16392/1\n+GGAAAGAGAGGTCAAATATTGACCATCAGAAACCACAACATCACCTTGAACGGACTCAATTCCATTAA\n++\n+GGEGFGGG=GEDGGFFGEBF=BFEDADEFEBDAEEFDAED@DD?@=B=@ABB@BB@B5B:3?######\n+@61G9EAAXX100520:5:1:11207:13415/1\n+GTTGTAACGCAAAAGCTTGGCTAAAGCAGGGCGGTTAGCAGCATCCTCATGGATACCAAGCTTCAAAT\n++\n+GGGGFGGGGGGGGGGFGFGGGGGFFEGFFDEEGB:E:CEEEDDEDDEB?FDD=CCA>,?<A??<:4AC\n+@61G9EAAXX100520:5:1:11230:2458/1\n+GTTTTGGTAAGATGGGTTGGATCACCTGGGCCGTTAGTCAAAAATATGCCATCGTAATTGCTAGCAAC\n++\n+GGGGGGGEFGGGGGCFDFGEFEFGGDDDDEGEDDDCECEDCDDCD@@CCCB=C=B:<A??>A<C?C?C\n+@61G9EAAXX100520:5:1:11234:3959/1\n+TTCGGCATCCTCAGCGTCACGGACCTTCTTGGTGAGCATGGCGAGCTGTTGACGAGAATCAACGTCAA\n++\n+GGGFCGGGGGFGFE?GGGGGGGEGGGGGGGEFEFEGGFDFDGDDFGDGDD=DBE:E:AABDBGEBA@:\n+@61G9EAAXX100520:5:1:11240:13099/1\n+TGACGGAGGCCTTGTCGACCTTGGAGTCACGGAGAACACGCTCGACGGGCTCCATGGCTTTACGGAAG\n++\n+EEEEE?5EDDE=EEEEE:BE:-A?>C9C?:C->=@CBCE?BB=E5@?-:?@?EBA:5-=5?:?#####\n+@61G9EAAXX100520:5:1:11244:13063/1\n+GCAATGGGAATCGAAGAAAACTTCATGGTGCGTGTAATAAAAATCCAAGATTTTCAATGAATAGATGC\n++\n+GGGGGGGGDGGFGGGGGDFGGGGGDGGFCDGEFGDFDGD?ECCGFGGEEFGEEEGGDGEDABEEDABB\n+@61G9EAAXX100520:5:1:11248:13248/1\n+CCCAGATATTCTCAGATGCCAAGAATTAAGTGCTCATTTGTATAGGGTAATTAGATGTATTTTGATCG\n++\n+DDDFGGGGEFGGEG:GDDDGGAFB?DEEBEB:EF?FDEGEE=A=BA??5=C5?@BDBBEEE?B3B@?#\n' |
| b |
| diff -r 000000000000 -r 702a3586942a test-data/Sp_hs.right.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Sp_hs.right.fq Tue Jul 17 11:48:23 2018 -0400 |
| b |
| b'@@ -0,0 +1,430704 @@\n+@61G9EAAXX100520:5:100:10004:15548/2\n+GACTGGTGACACTTCTGAGAAGACTCAAGATCTTTTGTTGCTTGATGTTGCTCCCCTTTCCATGGGTA\n++\n+EGGGGGDGGGGGGGGGEFGFGGFGGFDGGGGDGGGGGFGGGGFFGFGDFFGGFFFFEEEAFEFEEEAA\n+@61G9EAAXX100520:5:100:10005:5267/2\n+GTTGTGACTTTGTAGACGTTGAGCTTGGTTGGAGTTCTGAAACCATCAATATTCTTTATCAACACAAG\n++\n+GGGGGEGGGGGGGGEGGGGEGFGGFGGGDGBDFFEFGGGDFGFGGGEEGEFEEEGFGGEFEFF=EDDF\n+@61G9EAAXX100520:5:100:10006:11985/2\n+TTTGAATTGAATTCATATAATTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTGCAAC\n++\n+GGGGEGGGGGGFGGGGGGGGGGGGGGGFGGGGGFGGGGGGEGDGFFGGGGGGGGEEGGEFGFGFGFFG\n+@61G9EAAXX100520:5:100:10015:8882/2\n+TTAAGGAGTAATAAATCATTTTCCTTATAGGAAGTTAACGAAGAAAGTTATCTATTGCATCTTAAATA\n++\n+GGGGEGFGEFGGGGGGGGGGGGFGGGEGGFFEEGEGGEGGFFGDEEFCF?GFFFFFEFFFEGF:EDFF\n+@61G9EAAXX100520:5:100:10018:4558/2\n+CGGCCGTAAATTTGATGATCCTGAGGTTCAGTCTGACATGAAGCACTGGCCCTTCAAGGTCATCTCCA\n++\n+FGGGGGFEGFGGGGGGFGGGGGGFGDCFGGGGGGGFGGGGGGDGGEEEFGGGFBFDFEDCEDFEFGE=\n+@61G9EAAXX100520:5:100:10020:3719/2\n+CTCCATTACTCGTGCCCGTTTTGAGGAGCTTTGCGCCGATCTCTTCCGTAAAACCATGGAGCCCGTCG\n++\n+GGGGGGGGGGGGGGGGFGGGGGGGG?GGGGGGGFGGGGGGGGGGGFGFFGFFFGEGEFBEFGEBECGF\n+@61G9EAAXX100520:5:100:10036:2238/2\n+CGCGTACAAGCTGCTTCCAACTGCTCCAGCGGCCCTTACAATATCTCCGCCCAAGGTACTCTTGACGA\n++\n+GGGGGGGGFGEGGFGFGGGGGGGGDGGGGGGGGGGGFFGGGGEGGGGGGGFGBBED?FFFDGD??B?E\n+@61G9EAAXX100520:5:100:10036:9033/2\n+CGGAAAACTTACTATTTCTGGCGAAGTCGTCAATGAGAGAAAGAATGAAAGCACCGAGGGTAACCAAC\n++\n+GGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGFGFGFGGGGGGGFBGGGGEGGGGGGFGFCDDDFCBAD\n+@61G9EAAXX100520:5:100:10038:14729/2\n+TGATCGTATGGTATCTGAAGCCGAGAAGTACAAGGCTGAAGATGAAGCAGAAACTTCTCGTATTCAAG\n++\n+GFGGGGEGGDDEGGGGEGGGGGGFGGFEBFFFEEEGBGFFEEDEEDDGGDFDFBDBEFEECEDDCED?\n+@61G9EAAXX100520:5:100:10042:17662/2\n+GAAGAGTATGCCTCTTTCTACAAGTCTTTGACTAACGACTGGGAAGACCATTTGGCCGTCAAGCACTT\n++\n+GGFGGGGGGGGGGGGGEGGGGGDGFGEGGGDGGGGGFEGFEECFGFGEGGGGFDBEGGDEGGEDEG?B\n+@61G9EAAXX100520:5:100:10045:11664/2\n+CAGCTCAAGCGCTGGTGCTGTCCACAACAGTGATGAGCCCTTCTCTTCTAGTGGTGCCCCTCAAAATC\n++\n+GGGGFGGFGGGGFGGDGGGGGGGGGGGGFGFGGGGGGGGGGFGGFGFGGGBDFFDGGFEGEGGDGFBF\n+@61G9EAAXX100520:5:100:10046:4083/2\n+TCAAGGAATTCGAGGGCAAGAAATTGGTTAACATTACTAAGGATGGTCTTGAGTTGGAAGAGACTGAC\n++\n+GDFGGEGGGGGGGGGGFFFGGGGGGFDDFGGDGGGFGGGGGGFGGGEGFGFEGDGFEFGDEA:FFFF=\n+@61G9EAAXX100520:5:100:10048:17127/2\n+TTGAGCTTTCTGGTATCCCCCCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATGTTGAC\n++\n+GGGFGGFGGFGG??GFGGGGGG?FGGEGGFFEGGFGFDGGDDDFGAGFDAFBF=FFGGFEDDFD?=A5\n+@61G9EAAXX100520:5:100:10049:14013/2\n+TTTGAATTGAATTCATATAATTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTGCAAC\n++\n+GGGGGGGFFDGGGGGGGGGAFGGGGGGFGFEGGDGGGGGGEGGGFBGGGGGGGGEGFFFGEGEEFGEG\n+@61G9EAAXX100520:5:100:10055:6276/2\n+GCGTTTCCAACTTTGGTCCTCATCACATCCAGGAATTGTTGGACAGCCATCCAAAGATTATACCATGT\n++\n+GGGGGGGFGGGGGGGGEGFGGGGGGGGGFGFGGEGFGGDEFEEEFGGGGEGBEEEGDEEFEEEDDCA5\n+@61G9EAAXX100520:5:100:10064:17140/2\n+TTGAGCTTTCTGGTATCCCCCCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATGTCGAC\n++\n+EEDE=?DAED?E?AEEDEDEEEDADEEEEDA:AC=DDDCD?DA-E?B:=C,5C:?C5@:A########\n+@61G9EAAXX100520:5:100:10072:2848/2\n+GCATACTTGGTTGCCGACAAGGTCCAAGTCGTAAGTAAGCATAATGACGATGAGCAATACATCTGGGA\n++\n+GGGGFGGGGGGGGGGGGGGGGGDGGEFGGGGEGGGDGGGGGGGGGGGGDGGGGGGGGGGFGGEGFFFD\n+@61G9EAAXX100520:5:100:10075:9308/2\n+CAAGAACAAGAAGGATATCACCGGTAACGCTCGTGCTGTCCGTCGTCTTCGTACCGCTTGTGAGCGTG\n++\n+GGGFGGGGGGGGGGFFGGGFFGGGDGGFGFDFGDGEEEDEFFDFDDEFEEEDEEDDCDDDDBADCCBC\n+@61G9EAAXX100520:5:100:10090:12439/2\n+TCGAGGAAAGCAAATTGACTGACTTGCGCACTGCCGAGCCATCCCAGTATGTCAACGACGTAGAGGTT\n++\n+GEGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFGGGGFGDDFFEAF=GFDECDGEBDBA?\n+@61G9EAAXX100520:5:100:10115:15451/2\n+GGAGTTTGCTAAGCAACTTAAGACCATTTTGGGTGACAAGGTTGAAAAGGTTGTTGTTTCTAACAAGA\n++\n+GGGGGGGGGGFGGGGGGGGGFFGGFGGGGFGGFDGGFGEGGDGGEEEFFECGFCGGDGFGGFEBBEDE\n+@61G9EAAXX100520:5:100:10117:17047/2\n+TTCTAGTTCAGCTGCTACTTCAACTTCAACTCGCGTTTCATCGTCTGCTAAAGCAAGCACTTCTAGTG\n++\n+GFGGGGFGGGDGGFGEFGGGGGGFGGFFBGGCGGGEGDFGGDEFGGGGEF?FEEE:EEEE@DDDDB:B\n+@61G9EAAXX100520:5:100:10124:13659/2\n+TTTGAATTGAATTCATATAATTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTGCAAC\n++\n+GFGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGD=GGGGGGGGGFEGFGGFFGEGGDGFGGGBBEF\n+@61G9'..b'+GGFGGGGGGGFGGGGBGFBGGGG=GGGDGDGDGGGFGGGF:BEDEFEEFBGGFEGGFGFBEADD-@4C\n+@61G9EAAXX100520:5:1:11086:4349/2\n+TTTGAATTGAATTCATATAATTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTGCAAC\n++\n+GGGFGGGGGFGGGDGGGGGDGGEGDGEDGGEGGFD:EFFDGGG>GFEFEGEFE:EFF?DECB:+EFDF\n+@61G9EAAXX100520:5:1:11101:19670/2\n+GTAAAATCGCTCTTCATTCTTCTTCTTAAAGCAACTTTGTGGTGTGAATACACTGAGGAGACTGGCAG\n++\n+FDAFBEDDFEE-ECEEFD5DFFBFFEDFFFDFF5EE=EE:DEBE,B@?@CFCF:A?CA?E5??B?ECE\n+@61G9EAAXX100520:5:1:11102:11642/2\n+CGTGCTGTCCGTCGTCTTCGTACCGCTTGTGAGCGTGCTAAGCGTACTCTTTCTTCTTCTGCTCAAGC\n++\n+GGFFGGFGFGFEGGDF?FFFFBGGEGF?CCEBEEGCA-DF=AA?@D?D?EFDBEDDBEB?5BBBB?A#\n+@61G9EAAXX100520:5:1:11104:15532/2\n+TTTTGGGTGACAAGGTTGAAAAGGTTGTTGTTTCTAACAAGATTGTTGGTTCTCCTTGCTTGTTAACT\n++\n+GGGGGGFFGGGDFGGFGFGGFGGDEBGGGGGGGFFGFGAGG=GEAGGG?FGEFBFGFG=GEAEG:?A=\n+@61G9EAAXX100520:5:1:11108:14219/2\n+TGAAGTTAAGGCCACTGCTGGTGACACTCACTTGGGTGGTGAGGACTTTGACTCCCGTCTTGTAAACC\n++\n+GGGGGGFGGFGGGGGGGFGGGCFGGGGGGGFGGGFGCGGCECEE=DEEFEBDEGEEFCFFE=BA=CA5\n+@61G9EAAXX100520:5:1:11110:2201/2\n+GATTTTAATATGATAGTTTCGAAATGGTTATGAGACCAATCTTGTTGGATTGTGAGCATATATTATTG\n++\n+GEGGGGFGGGGGGGGGEGGGGGGAGGGEGGFGFFGGGGFGGGGGFGGBDGEFABEBB?55A@B?@FE4\n+@61G9EAAXX100520:5:1:11119:3103/2\n+GGACGCTGCCAATTTGCTGAAGCCAATGCTTGCACGTGGTAAGTTTCACTGTATTGGTGCTATTACTT\n++\n+55:BBAAB:ABB@@?D?=C:=CC5C:D:ABB5C-A55>=+>>;;;55>=>????C-..;;@@=@-?:C\n+@61G9EAAXX100520:5:1:11161:10524/2\n+GGAAAAGTACTTCTCGTGGCAAGCAGTTACTATGGACCATTTTATCCAGATGGAATGAATACTGGAGT\n++\n+EEEEEEEEDDEEEEEEEEB=D=??ECE=BEC:ED?DEB?DEBEE>EEBBB5BAB?5C:???55C===A\n+@61G9EAAXX100520:5:1:11169:2823/2\n+CTTAAGACCATTTTGGGTGACAAGGTTGAAAAGGTTGTTGTTTCTAACAAGATTGTTGGTTCTCCTTG\n++\n+FEBBBB?F@EEBFEFDFE?FDED=EBEBE?EDED5EEBEDEEEB?EAAE;BEEE=?ADD:?DEEE?EE\n+@61G9EAAXX100520:5:1:11178:16777/2\n+CAGATTTGAATTGAATTCATATAATTTCAAGTTACTCGCAATTGTTTAAATTTTAAAAAATGTCTTTG\n++\n+GFGGGGGGGGGGGGGGGGGGFGGGGGGGGFGGGGEEGGGGGGGGEGGEE?GDGGGGGGFDDGEGGGD?\n+@61G9EAAXX100520:5:1:11179:14447/2\n+ATTCAAGCGCAAGAACAAGAAGGATATCACCGGTAACGCTCGTGCTGTCCGTCGCCTTCGTACCGCTT\n++\n+FGGGGGDGGGDFFFFGGGGEGFDADFFGAEGGBDBFGBFBGGDFGDFBDFAAA@)?A<>:8@?#####\n+@61G9EAAXX100520:5:1:11182:5055/2\n+GCAAGCCGTTGAGAACTCTCCCTTCTTGGAAATCTTCCGTGCCAAGAAGTTTGATGTTCTCTTCATGG\n++\n+GGGGGGGGGGGGGGGFGGGGGFGFGFGGGAGGFGEFGGGGCDEGAFDBGEFEFDEDA=EFEEB5@?A5\n+@61G9EAAXX100520:5:1:11183:5436/2\n+GAAAGTTTGTTGATGATGATAAAGTGGTCCATCATGAATTTGTTTGGGCTTTTGACGTTGCAAAAAGC\n++\n+GGGFGGGGGGGGGGGGGGGGGGGGEGGEFDGGFGGDBEGGFGGGGGDDGGGF=DEBAFEGFDGGF?DE\n+@61G9EAAXX100520:5:1:11185:15634/2\n+GGAAGCTGCTGCTTCTGGTGCTGATATCTCCATGATTGGTCAATTCGGTGTTGGTTTCTACTCTGCAT\n++\n+GGDGGGGGGGFFGFFGGGEGGGGGFFGGGGGGGFDGFFGCGEGGEGGDEGEGGGEFGFFGFGGEGGDE\n+@61G9EAAXX100520:5:1:11190:8705/2\n+GTTCTCCGTGACTCCAAGGTCGACAAGGCCTCCGTCAACGAGATTGTTTTAGTCGGTGGTTCCACCCG\n++\n+EEEEDE?EBDDEEEE:D?B?EECCDBEBEEEEED?EDEDEDDEEEEEEE;A=@EEE?EEEB=EEE9ED\n+@61G9EAAXX100520:5:1:11201:16392/2\n+CCTTTTTGCATCCTAAAAACTATCTTTCGTTATATTTTTCCAATCATATTTCTACATAATATAGTCTA\n++\n+GGGGGGGGGGGFGGGGGF?GFEGEGGGGGGGBDEEGGGEGFGFGGFAB=GGGAGG:EEEEFFF:EEA?\n+@61G9EAAXX100520:5:1:11207:13415/2\n+CGACGACTGTGAAGAGTTGATTCCTGAATGGTTGGGTTTCATTAAGGGTGTTGTTGATTCTGAGGACT\n++\n+GGGGGGDGGFGFFDFGGFFFGGGGGGDFGGFGGGGGGFEGGGDDAEEECDEAEEEEEDC5==BEEDEF\n+@61G9EAAXX100520:5:1:11230:2458/2\n+GAAGAAGTGAATTTAGTTAGCCAGGTTTCCACCCGTGAGCCTTTCTTCGTCAGTGGCGGAGATGGCAT\n++\n+GGFGFGGEGG?FFFFGGGGFGGGFGEGGGGGGGGGEFGGGGFGGGGGGGDGFABGEDFDA########\n+@61G9EAAXX100520:5:1:11234:3959/2\n+CGGAAATCGACGTTTACAGAAGCAGCGTCGAAAAGACCAAGGCCGAGCTTGCTAGCTATCAAAAGGGT\n++\n+GGGDFGGGGFGGFGGEGGFGGGGGGGGDFGGADGFFGFGFEDB?FEE?ABFEEF?CBAFGFD5FB:A0\n+@61G9EAAXX100520:5:1:11240:13099/2\n+TTTGATGTTTCTCTTCTTACCATCGAAGAGGGTATCTTTGAAGTTAAGGCCACTGCTGGTGACACTCA\n++\n+5?FBEBE:=B5@ADB5:CD:=BEEE--DD-:C?ADDECCEA-D5AB?@?:?:A:A5:-><+==3B>(A\n+@61G9EAAXX100520:5:1:11244:13063/2\n+CGAAGCCTTACTAAACAAAGTAAATAAGTCTTCATCAATTCCCTTTAATCTCTCATTATAATTATTAT\n++\n+GGGGGGGGGGGGGF=GFGGGEGGGGFDBBFGGGGGGGFGGGGGGGFGDFGBGGEGGFFGEBGGGGGGG\n+@61G9EAAXX100520:5:1:11248:13248/2\n+ATAAAAATGGAGGCTAGACAGTCAATTGCTGACTTGTCTTACAAAATCACCAATCTTCTTCCTATCTC\n++\n+GGEDGD>C?CFDBBBABDEAF?EF?ED5EBADDDGGBEA=EBGD?FFEABE:EBEBDD5=?E:ABBA5\n' |