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Commit message:
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tool_dependencies.xml |
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| diff -r 000000000000 -r 7078b80ffc12 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Nov 05 09:00:17 2013 -0500 |
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| @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="segemehl" version="0.1.6"> + <install version="1.0"> + <actions> + <action type="download_by_url" target_filename="segemehl_0_1_6_1.tar.gz">http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_1_6.tar.gz</action> + <action type="change_directory">segemehl</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>segemehl.x</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + Short read mapping with gaps. + To compile segemehl a C-compiler is needed, usually GCC. + http://www.bioinf.uni-leipzig.de/Software/segemehl/ + + Please note that segemehl loads the whole index and genome files into memory. + Segemehl's index is around 45GB in size, so the memory usage of that tool is huge. + </readme> + </package> +</tool_dependency> |