| Previous changeset 4:8f20a5b9b282 (2024-07-24) Next changeset 6:fc7334661489 (2025-09-25) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/compleasm/ commit 0db08b58079fe83ce390bac19bcb056ed44932d3 |
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modified:
compleasm.xml macros.xml test-data/busco_database.loc |
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added:
test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1284at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1317at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/154at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/165at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/169at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/41at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/421at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/462at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/537at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/58at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/788at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/855at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/903at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/90at186328.hmm test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/lengths_cutoff test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/links_to_ODB10.txt test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/refseq_db.faa.gz test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/scores_cutoff |
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removed:
test-data/test-db/busco_downloads/information/lineages_list.2021-12-14.txt test-data/test-db/busco_downloads/lineages/file_versions.tsv test-data/test-db/busco_downloads/placement_files/list_of_reference_markers.eukaryota_odb10.2019-12-16.txt |
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| diff -r 8f20a5b9b282 -r 7109a27a11db compleasm.xml --- a/compleasm.xml Wed Jul 24 17:43:14 2024 +0000 +++ b/compleasm.xml Mon Jan 20 09:55:04 2025 +0000 |
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| @@ -11,9 +11,10 @@ </requirements> <version_command>compleasm --version</version_command> <command><![CDATA[ - - mkdir -p galaxy_db && - cp -r '${busco_database.fields.path}/lineages/${lineage_dataset}/' 'galaxy_db/' && + mkdir -p 'galaxy_db/' && + ln -s '${busco_database.fields.path}/lineages/${lineage_dataset}/' 'galaxy_db/${lineage_dataset}' && + ## Create a compleasm-specific empty file to avoid redownloading the lineage data (https://github.com/huangnengCSU/compleasm/blob/0.2.6/compleasm.py#L165) + touch 'galaxy_db/${lineage_dataset}.done' && compleasm run -a '$input' @@ -21,7 +22,7 @@ --mode $mode -L 'galaxy_db' -l '$lineage_dataset' - -t "\${GALAXY_SLOTS:-1}" + -t "\${GALAXY_SLOTS:-1}" #if str($specified_contigs) != '': --specified_contigs '$specified_contigs' @@ -43,7 +44,7 @@ </sanitizer> <validator type="regex">[0-9a-zA-Z_ ]+</validator> </param> - + <param name="outputs" type="select" multiple="true" label="Which outputs should be generated"> <option value="full_table_busco" selected="true">full busco table</option> <option value="full_table">full table</option> @@ -72,7 +73,7 @@ </data> <data name='translated_protein' format='fasta' label="${tool.name} on ${on_string}: Translated protein" from_work_dir="galaxy_output/*_odb10/translated_protein.fasta"> <filter>outputs and 'translated_protein' in outputs</filter> - </data> + </data> </outputs> <tests> @@ -80,18 +81,24 @@ <param name="input" value="small_genome.fasta"/> <param name="mode" value="busco"/> <param name="outputs" value="full_table_busco,full_table,miniprot,translated_protein"/> - <param name="busco_database" value="eukaryota_odb10"/> - <param name="lineage_dataset" value="eukaryota_odb10"/> + <param name="busco_database" value="entomoplasmatales_odb10"/> + <param name="lineage_dataset" value="entomoplasmatales_odb10"/> <output name="full_table_busco"> <assert_contents> <has_text text="Busco id"/> - <has_text text="Missing"/> + <has_text text="496at186328	Missing"/> + <has_text text="165at186328	Complete"/> + <has_text text="421at186328	Complete"/> + <has_text text="90at186328	Complete"/> </assert_contents> </output> <output name="full_table"> <assert_contents> - <has_text text="Gene"/> - <has_text text="Missing"/> + <has_text text="Gene	Status"/> + <has_text text="496at186328	Missing"/> + <has_text text="165at186328	Single"/> + <has_text text="421at186328	Single"/> + <has_text text="90at186328	Single"/> </assert_contents> </output> <output name="miniprot"> @@ -101,19 +108,22 @@ </output> <output name="translated_protein"> <assert_contents> - <has_text text="GGWLIGNGGAGGSGAAGVNGGAGGNGGAGGNGGAGG"/> - <has_text text="AAVFADRGAHVVLAVRNLEKGNAARARIMAARPGAHVTLQQLDLCSLDSVRAAADALRTAYPRIDVLINNAGVMW"/> + <has_text text="EKDFYQELGVSSDASPEEIKRAYRKLARDLHPDANPGNPAA"/> + <has_text text="AASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVD"/> </assert_contents> </output> + <assert_stdout> + <has_text text="S:1.20%, 4"/> + </assert_stdout> </test> </tests> <help><![CDATA[ - compleasm_ assesses genome completeness based on genome assembly. + compleasm_ assesses genome completeness based on genome assembly. .. _compleasm: https://github.com/huangnengCSU/compleasm - ]]> + ]]> </help> <expand macro="citation"/> </tool> |
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| diff -r 8f20a5b9b282 -r 7109a27a11db macros.xml --- a/macros.xml Wed Jul 24 17:43:14 2024 +0000 +++ b/macros.xml Mon Jan 20 09:55:04 2025 +0000 |
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| @@ -1,10 +1,10 @@ <macros> <token name="@TOOL_VERSION@">0.2.6</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="citation"> <citations> - <citation type="doi">10.1101/2023.06.03.543588</citation> + <citation type="doi">10.1101/2023.06.03.543588</citation> </citations> </xml> |
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| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/busco_database.loc --- a/test-data/busco_database.loc Wed Jul 24 17:43:14 2024 +0000 +++ b/test-data/busco_database.loc Mon Jan 20 09:55:04 2025 +0000 |
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| @@ -2,5 +2,5 @@ # - value # - name # - version -# - /path/to/data -eukaryota_odb10 eukaryota 5.4.6 ${__HERE__}/test-db/busco_downloads +# - /path/to/data +entomoplasmatales_odb10 entomoplasmatales 5.4.6 ${__HERE__}/test-db/busco_downloads |
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| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/information/lineages_list.2021-12-14.txt --- a/test-data/test-db/busco_downloads/information/lineages_list.2021-12-14.txt Wed Jul 24 17:43:14 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,199 +0,0 @@ - -################################################ - -Datasets available to be used with BUSCO v4 and v5: - - bacteria_odb10 - - acidobacteria_odb10 - - actinobacteria_phylum_odb10 - - actinobacteria_class_odb10 - - corynebacteriales_odb10 - - micrococcales_odb10 - - propionibacteriales_odb10 - - streptomycetales_odb10 - - streptosporangiales_odb10 - - coriobacteriia_odb10 - - coriobacteriales_odb10 - - aquificae_odb10 - - bacteroidetes-chlorobi_group_odb10 - - bacteroidetes_odb10 - - bacteroidia_odb10 - - bacteroidales_odb10 - - cytophagia_odb10 - - cytophagales_odb10 - - flavobacteriia_odb10 - - flavobacteriales_odb10 - - sphingobacteriia_odb10 - - chlorobi_odb10 - - chlamydiae_odb10 - - chloroflexi_odb10 - - cyanobacteria_odb10 - - chroococcales_odb10 - - nostocales_odb10 - - oscillatoriales_odb10 - - synechococcales_odb10 - - firmicutes_odb10 - - bacilli_odb10 - - bacillales_odb10 - - lactobacillales_odb10 - - clostridia_odb10 - - clostridiales_odb10 - - thermoanaerobacterales_odb10 - - selenomonadales_odb10 - - tissierellia_odb10 - - tissierellales_odb10 - - fusobacteria_odb10 - - fusobacteriales_odb10 - - planctomycetes_odb10 - - proteobacteria_odb10 - - alphaproteobacteria_odb10 - - rhizobiales_odb10 - - rhizobium-agrobacterium_group_odb10 - - rhodobacterales_odb10 - - rhodospirillales_odb10 - - rickettsiales_odb10 - - sphingomonadales_odb10 - - betaproteobacteria_odb10 - - burkholderiales_odb10 - - neisseriales_odb10 - - nitrosomonadales_odb10 - - delta-epsilon-subdivisions_odb10 - - deltaproteobacteria_odb10 - - desulfobacterales_odb10 - - desulfovibrionales_odb10 - - desulfuromonadales_odb10 - - epsilonproteobacteria_odb10 - - campylobacterales_odb10 - - gammaproteobacteria_odb10 - - alteromonadales_odb10 - - cellvibrionales_odb10 - - chromatiales_odb10 - - enterobacterales_odb10 - - legionellales_odb10 - - oceanospirillales_odb10 - - pasteurellales_odb10 - - pseudomonadales_odb10 - - thiotrichales_odb10 - - vibrionales_odb10 - - xanthomonadales_odb10 - - spirochaetes_odb10 - - spirochaetia_odb10 - - spirochaetales_odb10 - - synergistetes_odb10 - - tenericutes_odb10 - - mollicutes_odb10 - - entomoplasmatales_odb10 - - mycoplasmatales_odb10 - - thermotogae_odb10 - - verrucomicrobia_odb10 - archaea_odb10 - - thaumarchaeota_odb10 - - thermoprotei_odb10 - - thermoproteales_odb10 - - sulfolobales_odb10 - - desulfurococcales_odb10 - - euryarchaeota_odb10 - - thermoplasmata_odb10 - - methanococcales_odb10 - - methanobacteria_odb10 - - methanomicrobia_odb10 - - methanomicrobiales_odb10 - - halobacteria_odb10 - - halobacteriales_odb10 - - natrialbales_odb10 - - haloferacales_odb10 - eukaryota_odb10 - - alveolata_odb10 - - apicomplexa_odb10 - - aconoidasida_odb10 - - plasmodium_odb10 - - coccidia_odb10 - - euglenozoa_odb10 - - fungi_odb10 - - ascomycota_odb10 - - dothideomycetes_odb10 - - capnodiales_odb10 - - pleosporales_odb10 - - eurotiomycetes_odb10 - - chaetothyriales_odb10 - - eurotiales_odb10 - - onygenales_odb10 - - leotiomycetes_odb10 - - helotiales_odb10 - - saccharomycetes_odb10 - - sordariomycetes_odb10 - - glomerellales_odb10 - - hypocreales_odb10 - - basidiomycota_odb10 - - agaricomycetes_odb10 - - agaricales_odb10 - - boletales_odb10 - - polyporales_odb10 - - tremellomycetes_odb10 - - microsporidia_odb10 - - mucoromycota_odb10 - - mucorales_odb10 - - metazoa_odb10 - - arthropoda_odb10 - - arachnida_odb10 - - insecta_odb10 - - endopterygota_odb10 - - diptera_odb10 - - hymenoptera_odb10 - - lepidoptera_odb10 - - hemiptera_odb10 - - mollusca_odb10 - - nematoda_odb10 - - vertebrata_odb10 - - actinopterygii_odb10 - - cyprinodontiformes_odb10 - - tetrapoda_odb10 - - mammalia_odb10 - - eutheria_odb10 - - euarchontoglires_odb10 - - glires_odb10 - - primates_odb10 - - laurasiatheria_odb10 - - carnivora_odb10 - - cetartiodactyla_odb10 - - sauropsida_odb10 - - aves_odb10 - - passeriformes_odb10 - - stramenopiles_odb10 - - viridiplantae_odb10 - - chlorophyta_odb10 - - embryophyta_odb10 - - liliopsida_odb10 - - poales_odb10 - - eudicots_odb10 - - brassicales_odb10 - - fabales_odb10 - - solanales_odb10 - viruses (no root dataset) - - alphaherpesvirinae_odb10 - - baculoviridae_odb10 - - rudiviridae_odb10 - - betaherpesvirinae_odb10 - - herpesviridae_odb10 - - poxviridae_odb10 - - tevenvirinae_odb10 - - aviadenovirus_odb10 - - enquatrovirus_odb10 - - teseptimavirus_odb10 - - bclasvirinae_odb10 - - fromanvirus_odb10 - - skunavirus_odb10 - - betabaculovirus_odb10 - - pahexavirus_odb10 - - alphabaculovirus_odb10 - - tunavirinae_odb10 - - simplexvirus_odb10 - - gammaherpesvirinae_odb10 - - varicellovirus_odb10 - - cheoctovirus_odb10 - - guernseyvirinae_odb10 - - tequatrovirus_odb10 - - chordopoxvirinae_odb10 - - peduovirus_odb10 - - iridoviridae_odb10 - - spounavirinae_odb10 |
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| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1284at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1284at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,634 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 1284at186328\n+LENG 204\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:46 2019\n+NSEQ 25\n+EFFN 0.588989\n+CKSUM 685066608\n+STATS LOCAL MSV -10.4653 0.70515\n+STATS LOCAL VITERBI -11.3523 0.70515\n+STATS LOCAL FORWARD -4.9302 0.70515\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.61340 4.40698 2.76496 2.72402 3.27081 2.83879 3.73070 2.70543 2.65833 2.42499 3.53964 2.94294 3.80219 3.12240 3.06001 2.73058 2.75795 2.60114 4.52150 3.45963\n+ 2.68618 4.42226 2.77520 2.73124 3.46354 2.40513 3.72495 3.29354 2.67741 2.69355 4.24643 2.90347 2.73740 3.18147 2.89801 2.37887 2.77520 2.98519 4.58477 3.61504\n+ 0.07919 2.70824 4.65867 0.46934 0.98194 0.00000 *\n+ 1 3.04618 4.52227 4.31836 3.80642 3.14707 4.11763 4.50033 2.08260 3.59441 1.64093 1.53109 4.09537 4.45870 3.89965 3.80187 3.48293 3.30722 2.21840 5.08515 3.89300 2 m - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 2 2.85137 5.10024 3.07011 2.53552 4.48541 3.51136 3.57384 3.87624 1.52970 3.35131 4.18008 2.64952 3.90533 2.46310 2.09886 2.83399 3.04766 3.52771 5.44539 4.19046 3 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 3 2.86731 4.29786 4.22758 3.68983 1.96560 3.93449 3.88236 2.15682 3.56714 2.05236 3.20902 3.83969 4.26849 3.74067 3.73322 3.23813 3.09728 2.26292 4.28390 2.19284 4 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 4 3.00299 5.10733 3.38066 2.75363 4.54131 3.61731 3.59763 3.90016 1.27869 3.36046 4.23521 3.16185 3.99907 2.73710 1.76861 3.00409 3.17926 3.58454 5.41579 4.23739 5 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 5 2.25876 4.18405 3.34958 3.04680 4.11342 2.98861 4.11037 3.42643 3.04511 3.19530 4.07293 3.25640 3.70341 3.38552 3.35192 1.93705 1.46265 2.98944 5.48943 4.25115 6 t - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 6 2.92771 5.45001 1.20641 1.95671 4.73956 3.18546 3.75971 4.26035 2.79897 3.78850 4.65776 2.55982 3.82273 2.93669 3.39257 2.81715 3.22745 3.84393 5.94644 4.44090 7 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 7 2.78368 4.30576 3.96330 3.43192 3.44474 3.86870 4.23443 1.49113 2.88419 2.21405 3.34791 3.75445 4.24804 3.616'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 197 3.22701 4.67038 4.29193 3.93212 3.16038 4.06312 4.56782 2.36798 3.69924 0.80044 3.16349 4.20140 4.48753 4.05230 3.86484 3.64149 3.51837 2.42188 5.06278 3.80083 198 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 198 2.25145 4.18605 3.33942 3.02688 4.13270 2.98185 4.09919 3.46672 3.03314 3.21657 4.08323 3.24296 3.69516 3.36708 3.34885 1.69380 1.65315 3.01608 5.49909 4.26061 199 t - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 199 2.65951 4.24530 3.82207 3.29072 3.38706 2.76546 4.10061 1.74754 3.18558 2.08184 3.33215 3.60695 4.10604 3.49684 3.46765 3.00141 2.92649 2.04994 4.98623 3.75849 200 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 200 3.15630 4.50774 4.67561 4.13370 3.19824 4.41424 4.78455 1.70344 3.99270 1.15186 3.00933 4.40684 4.65923 4.19543 4.17146 3.76614 3.39593 1.81448 5.22291 4.08930 201 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 201 3.11165 4.44831 4.68889 4.13652 3.25254 4.40542 4.78157 1.33640 4.01295 1.55678 2.70310 4.39873 4.64880 4.20990 4.19091 3.74786 3.34778 1.78124 5.24099 4.11369 202 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 202 3.00276 4.35717 4.60167 4.04755 2.44098 4.25243 4.57238 1.60469 3.93642 1.72425 3.07818 4.26206 4.53124 4.11223 4.09640 3.58384 3.23943 1.60800 5.03557 3.81817 203 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 203 2.90723 5.28111 2.16182 1.15206 4.59376 3.23800 3.77285 4.06659 2.72128 3.63992 4.52275 2.75807 3.84466 2.95279 3.23277 2.83400 3.19793 3.69045 5.78351 4.36690 204 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02943 3.93632 4.65867 0.61958 0.77255 0.48576 0.95510\n+ 204 2.49329 4.27479 4.29688 3.74540 3.39517 4.04577 4.45701 1.67871 3.64663 2.06909 2.80903 4.01475 4.38898 3.90419 3.88029 3.36578 3.09911 1.47599 5.14672 3.95980 205 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.01990 3.92680 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1317at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/1317at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,952 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 1317at186328\n+LENG 310\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:48 2019\n+NSEQ 25\n+EFFN 0.674438\n+CKSUM 1578081900\n+STATS LOCAL MSV -11.2790 0.70100\n+STATS LOCAL VITERBI -11.9345 0.70100\n+STATS LOCAL FORWARD -5.4253 0.70100\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.62038 3.92298 2.78484 2.60762 3.28663 2.72894 3.72524 2.79964 2.51319 2.52108 3.74752 3.01108 3.55082 3.05303 3.00188 2.69929 2.94332 2.68394 5.14858 3.48889\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.00000 *\n+ 1 2.19876 4.38737 3.25962 2.74591 3.62337 3.42736 3.76888 2.97843 2.58499 2.68126 2.33815 2.98626 3.63091 3.03729 3.04723 2.62790 2.80339 2.72255 5.02400 3.77244 1 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 2 2.15669 4.89022 2.75370 2.28944 4.23052 2.92690 3.64225 3.66265 2.15308 3.23402 4.04187 2.49054 3.79373 2.78767 2.87920 2.50622 2.88149 3.30023 5.44267 4.08929 2 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 3 3.08659 5.05223 3.27051 2.87088 4.46662 3.56137 3.83150 3.90388 0.88267 3.44303 4.39923 3.28947 4.05419 3.01702 2.46118 3.12135 3.33145 3.60525 5.47212 4.30306 3 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 4 3.05656 5.07743 3.48239 2.86911 4.50112 3.64671 3.66574 3.88273 1.83498 3.36288 4.26566 3.25087 4.05115 2.81965 1.13815 3.08012 3.24590 3.58188 5.41799 4.25048 4 r - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 5 3.12437 5.26697 0.75753 2.41828 4.66124 3.30639 4.04370 4.27797 3.15173 3.86511 4.84720 2.98027 3.96796 3.28399 3.68350 3.07388 3.46601 3.90459 5.80579 4.51568 5 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 6 3.42728 4.86668 4.02020 3.77368 2.30644 3.97370 3.68142 3.41985 3.62774 2.84196 4.08247 3.87644 4.44527 3.90428 3.78590 3.55135 3.71488 3.29635 3.95447 0.78461 6 y - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 7 3.42728 4.86668 4.02020 3.77368 2.30644 3.97370 3.68142 3.41985 3.62774 2.84196 4.08247 3.87644 4.44527 3.90'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 303 2.53470 4.82340 2.62887 2.15958 4.07380 3.38239 3.59900 3.02091 2.28269 2.84612 3.89456 2.78489 3.78456 2.74320 2.85819 2.50553 2.75404 3.16005 5.31876 3.97344 305 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 304 2.40745 4.42889 2.82325 2.69212 4.17491 3.11717 3.91872 3.56410 2.82308 3.24069 4.07954 3.08167 3.75035 3.13112 3.22847 1.56061 2.09808 3.14344 5.49369 4.20436 306 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 305 2.66819 5.11212 2.13815 2.14092 4.41196 3.31860 3.27551 3.88101 2.35640 3.39818 4.17807 2.56749 3.77854 2.64880 2.91579 2.35461 2.67026 3.48093 5.56643 4.15755 307 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 306 3.50272 4.79682 4.51305 4.17016 1.00811 4.30043 3.53411 3.14139 4.02424 2.47972 3.75736 4.03062 4.62394 4.05566 4.09668 3.67260 3.73324 3.08743 3.69871 1.72531 308 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 307 2.84828 5.11237 2.94207 2.34545 4.46638 3.48752 3.41431 3.86863 1.41149 3.36354 4.19293 2.98349 3.90564 2.57928 2.41048 2.82832 2.91968 3.52079 5.48115 4.20102 309 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 308 2.42136 4.17688 3.73589 3.17269 3.34767 3.61835 3.96313 2.15831 3.09498 2.35849 3.10010 3.49742 3.39453 3.37727 3.38466 2.80369 2.72858 1.85096 4.85870 3.64570 310 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 309 2.59743 4.93497 2.67936 2.28656 4.22115 3.37320 3.57526 3.34959 1.99257 3.21140 3.99725 2.73499 3.77513 2.64408 2.70580 2.48885 2.61597 3.29451 5.40215 4.03808 311 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02774 3.99459 4.71694 0.61958 0.77255 0.48576 0.95510\n+ 310 2.65006 4.88664 2.45913 2.35924 4.14580 3.33429 3.66757 3.42605 2.49389 3.20370 3.79825 1.78367 3.81067 2.82851 2.95655 2.66266 2.90979 3.24226 5.41467 4.03739 312 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.01876 3.98561 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/154at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/154at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1645 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 154at186328\n+LENG 541\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:51 2019\n+NSEQ 25\n+EFFN 0.473022\n+CKSUM 1860889070\n+STATS LOCAL MSV -11.8259 0.69764\n+STATS LOCAL VITERBI -12.6582 0.69764\n+STATS LOCAL FORWARD -6.2764 0.69764\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.54297 4.52524 2.88957 2.66101 3.30289 2.65183 3.82271 2.68631 2.65021 2.39832 3.67917 3.06416 3.59619 3.20333 2.98328 2.72710 2.83872 2.59405 4.74406 3.56474\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.00000 *\n+ 1 2.93464 5.04071 2.47947 1.05573 4.38436 3.26081 3.84611 3.83409 2.72402 3.45471 4.42994 2.92167 3.86447 3.06238 3.13048 2.91934 3.23880 3.52020 5.55992 4.28245 1 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 2 2.69689 5.05285 2.03012 2.13822 4.37901 3.22500 3.64612 3.83729 2.39922 3.39270 4.21503 2.66351 3.76227 2.80227 3.03120 2.00932 2.96729 3.45677 5.58966 4.18391 2 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 3 2.06332 4.29661 2.82241 2.71144 4.15205 2.98998 3.94781 3.53183 2.88687 3.24222 4.09520 3.05720 3.67409 3.18420 3.26556 1.48796 2.73547 3.08515 5.49062 4.20789 3 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 4 3.01472 4.43963 4.30527 3.92046 3.36024 4.04340 4.65266 1.10440 3.74817 1.95086 3.29915 4.16878 4.47685 4.09878 3.94717 3.53686 3.31435 1.84598 5.24654 3.98286 4 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 5 2.86454 4.84915 2.88953 2.64422 4.01485 3.35239 3.80225 3.64263 2.46653 3.14705 4.17577 3.10366 3.90573 1.27201 2.75101 2.91331 3.16165 3.37369 5.29073 3.98317 5 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 6 2.97890 4.35658 4.52048 4.02616 3.44887 4.22338 4.77715 1.44501 3.90139 1.97744 3.28142 4.27488 4.57555 4.18943 4.12433 3.60361 3.25295 1.27597 5.37681 4.16128 6 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 7 3.13186 4.60052 4.15555 3.79555 3.12809 3.95517 4.45791 2.33128 3.56349 0.90159 3.15808 4.07304 4.39432 3.93'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 534 2.70636 4.70183 2.69736 2.58083 4.06209 3.17014 3.90465 3.76815 2.80671 3.41749 4.37305 1.19593 3.82108 3.17756 3.16048 2.77448 3.08764 3.39249 5.37046 4.01209 534 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 535 2.84639 4.34086 4.25378 3.82656 3.46907 3.90792 4.61067 1.85442 3.67022 2.09237 3.37961 4.04667 4.38736 4.01623 3.90029 3.32823 3.16971 1.12711 5.32512 4.05096 535 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 536 2.90135 4.99081 3.01548 2.61421 4.33249 3.46253 3.63230 3.75791 1.26505 3.27542 4.18879 3.05816 3.92507 2.68156 2.29149 2.91457 3.12730 3.45231 5.38415 4.13972 536 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 537 3.23188 4.63993 4.20976 3.92044 1.04686 3.92619 3.86848 2.75839 3.82805 2.13342 3.49182 3.99557 4.38541 4.00190 3.95298 3.50277 3.53309 2.74750 4.12417 2.49398 537 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 538 2.40180 4.24675 3.40980 3.16112 3.95067 3.08666 4.17999 3.07525 3.10367 2.93948 3.99155 3.37371 3.78884 3.49961 3.36323 2.60286 1.20815 2.77248 5.39034 4.16737 538 t - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 539 3.13186 4.60052 4.15555 3.79555 3.12809 3.95517 4.45791 2.33128 3.56349 0.90159 3.15808 4.07304 4.39432 3.93687 3.74291 3.52393 3.42716 2.36309 4.99948 3.71785 539 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 540 2.93464 5.04071 2.47947 1.05573 4.38436 3.26081 3.84611 3.83409 2.72402 3.45471 4.42994 2.92167 3.86447 3.06238 3.13048 2.91934 3.23880 3.52020 5.55992 4.28245 540 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 541 2.88836 5.36900 1.33458 1.83219 4.65977 3.16085 3.72570 4.15611 2.74968 3.70277 4.57964 2.64802 3.78903 2.90361 3.32818 2.78612 3.18392 3.75678 5.85918 4.38446 541 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02171 3.84102 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/165at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/165at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1561 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 165at186328\n+LENG 513\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:49 2019\n+NSEQ 25\n+EFFN 0.491333\n+CKSUM 2779730949\n+STATS LOCAL MSV -11.7817 0.69792\n+STATS LOCAL VITERBI -12.7924 0.69792\n+STATS LOCAL FORWARD -6.1586 0.69792\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.46136 4.55191 2.81046 2.61149 3.53328 2.76766 3.98815 2.71802 2.61457 2.44774 3.69756 3.01914 3.41184 3.11153 3.02566 2.69092 2.79572 2.56479 5.21275 3.75723\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.00000 *\n+ 1 2.93811 5.02466 3.25429 2.69817 4.42762 3.54655 3.59305 3.80538 1.28401 3.29688 4.18112 3.11642 3.95413 2.74183 1.96218 2.94961 3.13270 3.49444 5.37503 4.17754 1 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 2 3.02551 4.44626 4.32545 3.94098 3.36936 4.05875 4.67045 1.08684 3.76898 1.95689 3.30586 4.18733 4.49067 4.11802 3.96637 3.55337 3.32481 1.84576 5.25870 3.99637 2 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 3 3.02551 4.44626 4.32545 3.94098 3.36936 4.05875 4.67045 1.08684 3.76898 1.95689 3.30586 4.18733 4.49067 4.11802 3.96637 3.55337 3.32481 1.84576 5.25870 3.99637 3 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 4 2.65604 4.43216 3.32834 3.22684 4.36924 0.74028 4.34754 3.96713 3.40714 3.62215 4.59785 3.49265 3.82307 3.73187 3.64395 2.82775 3.13671 3.49683 5.46626 4.47090 4 g - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 5 3.02551 4.44626 4.32545 3.94098 3.36936 4.05875 4.67045 1.08684 3.76898 1.95689 3.30586 4.18733 4.49067 4.11802 3.96637 3.55337 3.32481 1.84576 5.25870 3.99637 5 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 6 2.98191 5.10905 0.92841 2.33050 4.48510 3.20525 3.92476 4.07164 3.00753 3.68126 4.65922 2.88651 3.85754 3.16391 3.52276 2.94509 3.32034 3.71160 5.65511 4.35921 6 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 7 3.14723 4.61164 4.17796 3.81779 3.13300 3.97301 4.47578 2.33668 3.58561 0.88408 3.15823 4.09396 4.40961 3.95'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 506 2.94616 5.05568 2.48464 1.03563 4.40100 3.26946 3.85567 3.85348 2.73529 3.47176 4.44613 2.92889 3.87371 3.07149 3.14338 2.92929 3.25034 3.53807 5.57393 4.29619 506 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 507 2.72839 4.89643 2.86585 2.34339 4.16203 3.40864 3.60692 3.56124 2.17480 3.13083 3.73962 2.94484 3.84473 1.83437 2.55120 2.74530 2.95574 3.25310 5.34275 4.04107 507 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 508 1.48073 4.24857 3.55365 3.13068 3.66251 3.27872 4.08415 2.67420 3.02384 2.51956 3.06596 3.39961 3.87998 3.38998 3.32210 2.68006 2.82951 2.45961 5.22084 3.97500 508 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 509 3.00920 4.48216 4.27730 3.75642 3.13043 4.09578 4.46443 2.00116 3.55944 1.62448 1.69409 4.05464 4.42762 3.85842 3.77450 3.45075 3.26527 2.15817 5.06258 3.87579 509 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 510 2.22552 4.76665 2.91736 2.46499 4.11111 3.35989 3.62392 3.49250 1.97819 3.09524 3.93634 2.95267 3.80811 2.47385 2.65124 2.67090 2.66211 3.16790 5.32044 4.02449 510 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 511 2.35714 4.55544 2.93269 2.39785 3.75490 3.40385 3.66036 3.11787 2.50444 2.78536 2.68576 3.01014 3.81916 2.63518 2.90899 2.67193 2.81071 2.85177 5.10777 3.82257 511 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 512 1.02416 4.18850 3.45534 3.24632 4.04526 3.01323 4.26921 3.16970 3.26240 3.05164 4.08427 3.39774 3.75177 3.60422 3.51341 2.53886 2.81572 2.82534 5.47313 4.27259 512 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 513 1.65974 4.11579 3.30222 3.03667 4.16044 2.89662 4.12268 3.49849 3.09028 3.25618 4.11995 3.21743 3.63729 3.39976 3.39761 1.50848 2.66014 3.01242 5.52852 4.29511 513 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02140 3.85506 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/169at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/169at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1669 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 169at186328\n+LENG 549\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:51 2019\n+NSEQ 25\n+EFFN 0.503540\n+CKSUM 1832237236\n+STATS LOCAL MSV -11.9256 0.69760\n+STATS LOCAL VITERBI -12.7495 0.69760\n+STATS LOCAL FORWARD -6.3332 0.69760\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.56373 4.47015 2.87309 2.64022 3.30845 2.77140 3.76780 2.67970 2.61258 2.45240 3.69169 3.00845 3.56804 3.14825 2.96237 2.73276 2.88964 2.59460 4.83877 3.41002\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.00000 *\n+ 1 1.50985 4.11118 3.33015 3.05898 4.15818 2.89934 4.13430 3.48988 3.10753 3.25163 4.11490 3.23073 3.64080 3.41418 3.41251 1.63807 2.65991 3.00568 5.52870 4.29959 1 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 2 2.74207 5.19696 2.00657 1.89704 4.51389 2.62725 3.65196 3.99558 2.56871 3.51902 4.33310 2.41350 3.76496 2.80187 3.11094 2.44876 3.01239 3.59022 5.69960 4.25671 2 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 3 2.55459 4.63345 2.80379 2.51542 4.11484 3.20279 3.75227 3.60312 2.51930 3.20876 4.07612 2.96900 3.77647 2.26401 2.88128 1.74681 2.88801 3.22977 5.39478 4.06318 3 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 4 3.03262 4.45070 4.33864 3.95445 3.37543 4.06879 4.68214 1.07546 3.78263 1.96097 3.31038 4.19950 4.49973 4.13066 3.97896 3.56421 3.33172 1.84577 5.26673 4.00525 4 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 5 2.80316 4.98965 2.88550 2.48332 4.33443 3.42452 3.60713 3.73435 1.86670 3.26361 4.12595 2.96615 3.87336 1.84548 2.41571 2.80434 2.92038 3.40685 5.41620 4.13732 5 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 6 2.95075 4.36001 4.45305 3.97327 3.47297 4.14512 4.73841 1.64816 3.83842 2.02978 3.32514 4.21678 4.53428 4.14636 4.06748 3.53442 3.23745 1.13870 5.37832 4.14324 6 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 7 3.15740 4.61904 4.19270 3.83247 3.13632 3.98471 4.48759 2.34038 3.60021 0.87276 3.15850 4.10776 4.41968 3.96'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 542 2.79784 5.11994 2.69646 2.01109 4.45829 3.38274 3.58787 3.87793 1.80065 3.37703 4.20473 2.86960 3.83945 2.26863 2.51236 2.76190 3.01989 3.51737 5.50714 4.18827 543 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 543 3.36530 4.69506 4.36031 3.98905 1.25579 4.18084 3.46635 3.06026 3.85286 2.43101 3.68089 3.90817 4.50903 3.91801 3.95699 3.53923 3.59530 2.98793 3.65132 1.56311 544 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 544 2.80961 4.35158 4.12812 3.79123 3.55143 3.72601 4.59257 2.04990 3.65904 2.23805 3.51619 3.98076 4.28634 4.01866 3.87137 3.22959 3.17107 1.02240 5.33623 4.06801 545 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 545 2.82479 5.12879 2.56773 1.67907 4.46144 3.33874 3.63442 3.87542 1.82605 3.40946 4.26075 2.84485 3.84087 2.78566 2.63958 2.78603 3.06522 3.52242 5.55327 4.22015 546 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 546 2.72492 4.72170 2.70915 2.59478 4.08551 3.18518 3.92236 3.79623 2.82616 3.44284 4.39802 1.15456 3.83710 3.19504 3.18096 2.79199 3.10680 3.41824 5.39119 4.03365 547 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 547 3.11618 4.47797 4.57548 4.06238 3.20734 4.34617 4.72196 1.38839 3.88646 1.40926 3.06317 4.33489 4.62266 4.14908 4.07666 3.71756 3.36443 1.86402 5.19940 3.99984 548 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 548 2.99158 5.12040 0.91522 2.33590 4.49764 3.21204 3.93258 4.08623 3.01703 3.69416 4.67223 2.89241 3.86496 3.17166 3.53359 2.95366 3.33017 3.72517 5.66587 4.37010 549 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03134 3.87445 4.59679 0.61958 0.77255 0.48576 0.95510\n+ 549 2.89687 4.30876 4.33660 3.78416 2.29461 4.04916 4.24264 1.68946 3.66800 1.79176 3.05578 4.00308 4.35791 3.86007 3.84763 3.36286 3.13072 1.97098 4.72830 3.24180 550 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02120 3.86431 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/41at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/41at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,2113 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 41at186328\n+LENG 697\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:54 2019\n+NSEQ 25\n+EFFN 0.491333\n+CKSUM 823461933\n+STATS LOCAL MSV -12.3077 0.69664\n+STATS LOCAL VITERBI -13.2285 0.69664\n+STATS LOCAL FORWARD -6.6476 0.69664\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.59137 4.51863 2.92805 2.71403 3.18927 2.91813 3.73660 2.73658 2.66037 2.39667 3.60240 3.05976 3.36045 3.14984 3.03719 2.74872 2.90067 2.56800 4.12332 3.26962\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.00000 *\n+ 1 2.96358 4.51349 4.04171 3.63465 3.20462 3.82871 4.37145 2.37950 3.40311 1.80039 1.39176 3.91302 4.28929 3.78547 3.60927 3.31193 3.26875 2.38478 5.04447 3.80561 1 m - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 2 2.83598 5.35566 1.90059 1.46858 4.63389 3.18827 3.67681 4.13564 2.63424 3.64610 4.48343 2.54954 3.77993 2.74759 3.18995 2.73920 3.11229 3.72578 5.81356 4.33753 2 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 3 3.31576 4.67038 4.31070 3.93404 1.19535 4.14593 3.51330 2.97142 3.80043 2.33756 3.60427 3.89825 4.48275 3.89405 3.92020 3.51074 3.55114 2.91466 3.71388 1.79098 3 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 4 2.31149 4.23179 3.20020 3.01565 4.06914 2.96181 4.12570 3.59078 3.08894 3.31157 4.23827 3.24158 3.70002 3.43882 3.37518 1.10193 2.79109 3.12746 5.44220 4.15263 4 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 5 2.98705 4.80573 3.11875 2.87799 3.27974 3.44147 1.15774 3.68886 2.72124 3.18372 4.22612 3.28760 3.99361 3.24413 2.98737 3.05781 3.29018 3.42413 4.74489 3.23081 5 h - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 6 2.92425 4.98245 3.16095 2.69075 4.36803 3.49961 3.63736 3.77082 1.20921 3.29009 4.19673 3.11505 3.94589 2.79937 2.16713 2.94569 3.14304 3.46403 5.37608 4.16400 6 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 7 1.69278 4.37246 3.16660 2.73687 3.86570 3.22669 3.81606 3.13950 2.43689 2.81245 3.78410 3.12226 3.77989 3.0504'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 690 2.93461 5.01698 3.23537 2.69517 4.41635 3.53810 3.59971 3.79848 1.26779 3.29480 4.18223 3.11480 3.95224 2.75060 2.00560 2.94776 3.13324 3.48816 5.37505 4.17454 690 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 691 3.02551 4.44626 4.32545 3.94098 3.36936 4.05875 4.67045 1.08684 3.76898 1.95689 3.30586 4.18733 4.49067 4.11802 3.96637 3.55337 3.32481 1.84576 5.25870 3.99637 691 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 692 2.87387 4.34905 4.30435 3.86445 3.47416 3.96422 4.64360 1.81851 3.71058 2.08230 3.37134 4.08911 4.42496 4.04957 3.94068 3.37754 3.18907 1.11447 5.34181 4.07501 692 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 693 2.71750 4.71381 2.70438 2.58914 4.07620 3.17917 3.91524 3.78505 2.81834 3.43273 4.38804 1.17083 3.83069 3.18800 3.17275 2.78498 3.09913 3.40798 5.38294 4.02506 693 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 694 3.06137 4.43396 4.52038 3.98723 2.13028 4.24044 4.38987 1.61780 3.86220 1.59042 3.00488 4.20025 4.51276 4.03018 4.02460 3.57601 3.29596 2.07481 4.77554 3.41462 694 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 695 2.61554 4.29144 4.05461 3.69733 3.59031 3.65526 4.54153 2.03065 3.57557 2.26479 3.50735 3.88475 4.22697 3.92968 3.80655 3.10739 3.07526 1.12407 5.37240 4.11307 695 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 696 2.98393 4.35956 4.53349 4.03975 3.46148 4.23173 4.79008 1.47028 3.91557 1.99176 3.29358 4.28631 4.58446 4.20377 4.13799 3.61277 3.25836 1.23644 5.38884 4.17226 696 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03163 3.86529 4.58763 0.61958 0.77255 0.48576 0.95510\n+ 697 2.86329 4.95033 2.97941 2.60763 4.33178 3.42273 3.65865 3.76961 1.25369 3.32696 4.22189 2.91304 3.91029 2.82888 2.36008 2.88423 3.11079 3.44289 5.39981 4.14151 697 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02140 3.85506 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/421at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/421at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1090 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 421at186328\n+LENG 356\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:48 2019\n+NSEQ 22\n+EFFN 0.529053\n+CKSUM 2593624897\n+STATS LOCAL MSV -11.2273 0.70000\n+STATS LOCAL VITERBI -12.1912 0.70000\n+STATS LOCAL FORWARD -5.5764 0.70000\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.43884 4.40339 2.96738 2.70249 3.32462 2.68756 3.61489 2.69360 2.69159 2.45416 3.66783 3.04236 3.53981 3.14493 3.05703 2.69235 2.86151 2.59295 5.08545 3.45877\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.00000 *\n+ 1 2.74227 5.20081 2.25862 1.72818 4.50019 3.25959 3.62642 3.97294 2.15801 3.48538 4.29094 2.49106 3.77781 2.76676 2.95997 2.56904 2.99560 3.57385 5.65083 4.22856 1 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 2 2.48004 3.87289 3.58981 3.02186 3.18230 3.55160 3.83878 2.58980 2.94771 2.03763 3.07179 3.37430 3.93744 3.23754 3.25486 2.36081 2.77824 2.38918 4.76795 3.35219 2 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 3 3.15974 4.52095 4.63258 4.07038 3.09047 4.39448 4.70082 1.76650 3.92885 1.15275 2.46530 4.35780 4.61197 4.10597 4.09914 3.72905 3.38592 2.08671 5.12224 4.02266 3 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 4 2.72868 5.07913 2.38931 2.25288 4.39188 3.29620 3.62671 3.84798 2.11024 3.38348 4.20244 1.92532 3.79616 2.77345 2.73675 2.69399 2.97942 3.47389 5.54977 4.17175 4 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 5 2.64462 4.75684 2.93074 2.39021 4.01027 3.28223 3.61844 3.40345 1.98683 2.45772 3.86073 2.70472 3.82395 2.78906 2.69321 2.62721 2.87597 3.10088 5.25630 3.95796 5 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 6 2.96986 5.08568 2.49587 0.99609 4.43445 3.28725 3.87559 3.89248 2.75871 3.50615 4.47905 2.94422 3.89275 3.09067 3.16988 2.95001 3.27418 3.57409 5.60209 4.32410 6 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 7 3.17847 4.63444 4.22303 3.86278 3.14335 4.00875 4.51196 2.34832 3.63033 0.84994 3.15944 4.13625 4.44039 3.99'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 349 2.75875 4.99434 2.78979 2.34588 4.35790 3.38540 3.61181 3.75660 1.59057 3.29955 4.13467 2.57633 3.84444 2.75825 2.52950 2.75287 2.78822 3.40910 5.45446 4.15225 349 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 350 2.86645 5.41769 1.55177 1.85892 4.70202 3.18291 3.70097 4.21611 2.69404 3.71926 4.56013 2.14320 3.79039 2.86353 3.27612 2.75954 3.14977 3.79396 5.88255 4.38635 350 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 351 2.60413 4.80053 2.91110 2.40267 4.02088 3.38709 2.75094 3.47001 2.32591 3.05933 3.88044 2.82399 3.26260 2.48157 2.67586 2.57405 2.83363 3.14678 5.26545 3.58881 351 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 352 2.32174 4.41517 2.99776 2.64828 4.09042 3.12416 3.83263 3.48090 2.55459 3.14123 3.98202 2.90114 3.72845 3.04178 3.05245 1.67794 2.41828 3.08442 5.39472 4.11780 352 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.05352 3.89333 3.45046 0.61958 0.77255 0.48576 0.95510\n+ 353 2.82717 5.34299 1.81254 1.54063 4.62646 3.19157 3.67643 4.12380 2.63268 3.63659 4.47121 2.65678 3.77963 2.73052 3.19037 2.63485 3.10313 3.71390 5.80733 4.33306 353 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03144 3.87125 4.59360 0.61958 0.77255 0.50592 0.92370\n+ 354 2.68873 5.13583 2.27139 1.88939 4.42704 3.26560 3.42365 3.89725 2.37285 3.41610 4.21118 2.44414 3.75873 2.58277 2.93722 2.50078 2.84929 3.50145 5.58804 4.17170 354 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03144 3.87125 4.59360 0.61958 0.77255 0.47336 0.97526\n+ 355 2.68727 4.91511 2.28353 2.27127 4.34771 3.16221 3.76484 3.88642 2.69382 3.48626 4.34546 1.52104 3.78139 2.95867 3.16566 2.57818 3.02162 3.48016 5.62314 4.20432 355 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03074 3.89333 4.61567 0.61958 0.77255 0.48576 0.95510\n+ 356 3.14819 4.50631 4.63162 4.07466 3.13975 4.39756 4.72852 1.72422 3.93773 1.15274 2.78429 4.36313 4.62472 4.12883 4.11849 3.73599 3.37928 1.94025 5.16833 4.05680 356 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02080 3.88338 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/462at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/462at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1129 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 462at186328\n+LENG 369\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:49 2019\n+NSEQ 23\n+EFFN 0.558716\n+CKSUM 1835352195\n+STATS LOCAL MSV -11.1734 0.69975\n+STATS LOCAL VITERBI -12.1159 0.69975\n+STATS LOCAL FORWARD -5.7396 0.69975\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.58640 4.31581 2.92617 2.73568 3.34314 2.65191 3.80265 2.64360 2.68988 2.46025 3.68904 3.07895 3.46701 3.16078 2.97849 2.72386 2.82789 2.53292 4.67888 3.46129\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.04785 3.91484 3.62028 0.61958 0.77255 0.00000 *\n+ 1 2.62938 5.08164 2.49840 2.17733 4.40040 3.32054 3.61127 3.83868 1.73891 3.36864 4.18280 2.47414 3.80106 2.75187 2.75173 2.69413 2.96975 3.46674 5.53426 4.16918 1 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03061 3.89760 4.61994 0.61958 0.77255 0.47579 0.97125\n+ 2 2.72768 4.26103 3.86491 3.31913 2.44743 3.74106 3.74908 2.37993 3.21744 2.31291 3.17799 3.34796 4.10329 3.46119 3.46324 3.02314 2.95927 2.47291 4.29817 1.94143 2 y - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 3 2.73339 4.98656 2.88872 2.43572 4.34262 3.40992 3.59327 3.75981 1.88871 3.28465 4.10557 2.19396 3.84092 2.73138 2.26428 2.58421 2.96049 3.40534 5.42969 4.12674 3 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 4 2.23967 4.17807 3.31624 3.00822 4.13422 2.96717 4.08751 3.47355 3.01946 3.21968 4.08494 3.22663 3.68198 3.35325 3.33664 1.56042 1.83874 3.01742 5.49772 4.25743 4 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 5 3.17810 4.60924 4.43713 3.96569 3.07274 4.24977 4.59418 2.08819 3.72301 0.94086 2.99579 4.24419 4.56905 4.03081 3.90598 3.65577 3.43948 2.20948 5.06570 3.81805 5 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 6 2.09427 4.22544 3.95382 3.55996 3.69160 3.48927 4.42728 2.18209 3.47226 2.44287 3.58779 3.73659 4.09191 3.79517 3.72562 2.91427 2.95322 1.29198 5.37050 4.14383 6 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 7 3.01433 4.37500 4.60472 4.11173 3.49951 4.28511 4.85389 1.47502 3.99019 2.02613 3.32579 4.34979 4.63143 4.27'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 362 2.49247 4.78782 2.91640 2.20893 4.04234 3.38504 3.59285 3.45049 2.14879 2.84029 3.86891 2.77149 3.78869 2.67156 2.77307 2.62236 2.56873 3.03307 5.28371 3.95779 363 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 363 2.91415 4.90144 2.93070 2.68587 4.07565 3.39386 3.84463 3.71269 2.50369 3.21087 4.23733 3.14606 3.94779 1.16061 2.78713 2.96001 3.21099 3.43967 5.34008 4.03655 364 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 364 2.43535 4.28055 3.46551 3.21931 4.00609 3.11847 4.23342 3.13837 3.16312 3.00037 4.04806 3.42200 3.82551 3.55579 3.41986 2.63708 1.10210 2.82883 5.44017 4.22268 365 t - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 365 3.03700 4.38828 4.64061 4.14799 3.47468 4.31803 4.87830 1.24744 4.02330 1.98091 3.29612 4.38435 4.65271 4.29974 4.23261 3.70381 3.30802 1.37916 5.43025 4.22293 366 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 366 3.17785 4.53724 4.65079 4.09384 3.12596 4.41976 4.74239 1.80512 3.94920 1.07476 2.78235 4.38471 4.64138 4.13836 4.12648 3.76004 3.40813 1.99362 5.16797 4.05925 367 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 367 2.78191 4.27320 4.06459 3.49126 3.12953 3.88697 4.16190 2.12954 3.37183 1.45756 2.74758 3.78589 4.21464 3.62155 3.60308 3.17632 2.82420 2.22429 4.84832 3.26877 368 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 368 2.75769 5.23554 2.17039 1.81933 4.53987 3.26943 3.62970 4.01624 1.95586 3.51786 4.32055 2.56183 3.78656 2.76730 2.94276 2.69047 3.00940 3.61043 5.67292 4.24828 369 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03008 3.91484 4.63718 0.61958 0.77255 0.48576 0.95510\n+ 369 2.67947 5.10838 2.45203 1.90107 4.40545 2.82571 3.43584 3.87031 2.21043 3.39203 4.18364 2.49927 3.53382 2.73359 2.90485 2.63607 2.92446 3.47751 5.56415 4.15861 370 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02034 3.90510 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/537at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/537at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,916 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 537at186328\n+LENG 298\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:50 2019\n+NSEQ 25\n+EFFN 0.466919\n+CKSUM 2569248550\n+STATS LOCAL MSV -11.0167 0.70132\n+STATS LOCAL VITERBI -12.0028 0.70132\n+STATS LOCAL FORWARD -5.3594 0.70132\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.65853 4.48179 2.87400 2.64781 3.24518 2.75791 3.79363 2.60191 2.65729 2.37154 3.64019 3.04723 3.53357 3.10666 2.98978 2.81208 2.94381 2.51660 4.60269 3.59864\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.00000 *\n+ 1 2.56448 4.63924 2.60612 2.47171 4.11571 3.10684 3.82795 3.73671 2.70667 3.38973 4.28437 1.48261 3.76011 3.06370 3.08536 2.50974 2.94875 3.32455 5.44992 4.04672 1 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 2 3.01109 4.43742 4.29844 3.91353 3.35719 4.03820 4.64667 1.11039 3.74115 1.94887 3.29694 4.16251 4.47218 4.09229 3.94069 3.53128 3.31085 1.84612 5.24245 3.97830 2 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 3 3.12916 4.53626 4.45455 3.94680 3.09099 4.27433 4.60477 1.85419 3.74329 1.08762 2.97212 4.23847 4.56039 4.02150 3.93762 3.64774 3.37792 2.06044 5.08930 3.87745 3 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 4 2.84183 5.12219 2.35358 1.32360 4.39069 3.24282 3.70972 3.86088 2.53499 3.42317 4.33580 2.78254 3.82222 2.74988 2.95553 2.79844 3.12258 3.52295 5.60514 4.22095 4 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 5 3.11382 4.47944 4.57160 4.01807 3.13237 4.35379 4.67801 1.59262 3.86877 1.27970 2.72464 4.30901 4.59091 4.08274 4.05702 3.69233 3.34624 1.96400 5.14255 4.00952 5 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 6 2.97701 4.81730 3.46509 2.98198 4.16536 3.46951 3.80662 3.70557 2.22845 3.22621 4.22737 3.34352 3.97364 3.02850 1.01849 3.06261 3.24491 3.43071 5.25904 4.09864 6 r - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 7 2.68237 4.92436 2.22331 2.23499 4.33161 3.14876 3.73715 3.86708 2.67091 3.46604 4.32600 1.60546 3.76393 2.929'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 291 2.90436 4.34861 4.35571 3.88968 3.45626 4.04587 4.66622 1.72972 3.74506 2.03641 3.32937 4.13136 4.46679 4.06890 3.97848 3.44258 3.20257 1.15268 5.34176 4.09209 291 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 292 2.94938 4.50234 4.02195 3.61374 3.19714 3.81489 4.35485 2.37019 3.38312 1.79594 1.42820 3.89432 4.27559 3.76684 3.59140 3.29568 3.25431 2.37325 5.03436 3.79371 292 m - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 293 3.29377 4.67746 4.05240 3.75236 2.64127 3.70180 3.86924 3.31658 3.47524 2.71577 3.95154 3.90669 4.21747 3.86422 3.60803 3.49769 3.59294 3.20620 0.93889 2.64477 293 w - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 294 2.94908 4.91117 3.12331 2.75003 4.29170 3.44096 3.74579 3.71944 1.07409 3.29031 4.25346 3.17552 3.94338 2.93896 2.42794 2.99294 3.20443 3.42879 5.35719 4.16637 294 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 295 2.83379 5.13821 2.35657 1.37910 4.40657 3.24950 3.68908 3.87689 2.49737 3.42661 4.32274 2.77288 3.81802 2.63866 2.91644 2.78623 3.10670 3.53277 5.60648 4.22018 295 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 296 2.99010 4.38363 4.48728 4.00982 3.39341 4.19507 4.75207 1.23452 3.86311 1.91124 3.24160 4.25709 4.56000 4.16239 4.07905 3.58728 3.26998 1.57190 5.33825 4.11522 296 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03223 3.84671 4.56906 0.61958 0.77255 0.48576 0.95510\n+ 297 2.88438 5.36724 1.35351 1.81628 4.65717 3.15925 3.72146 4.15316 2.74344 3.69867 4.57410 2.64527 3.78625 2.89870 3.32156 2.78210 3.17917 3.75353 5.85596 4.38084 297 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.07574 3.84671 2.96434 0.61958 0.77255 0.48576 0.95510\n+ 298 2.81182 5.32782 1.76908 1.73178 4.61115 3.15716 3.65853 4.11314 2.63146 3.62865 4.46807 2.23981 3.75428 2.82072 3.19682 2.71526 3.09168 3.70241 5.79777 4.31845 298 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02277 3.79374 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/58at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/58at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,2134 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 58at186328\n+LENG 704\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:52 2019\n+NSEQ 24\n+EFFN 0.559570\n+CKSUM 4115531973\n+STATS LOCAL MSV -12.2505 0.69661\n+STATS LOCAL VITERBI -13.2227 0.69661\n+STATS LOCAL FORWARD -6.7157 0.69661\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.61002 4.59367 2.90949 2.69119 3.42760 2.83555 3.82545 2.51832 2.62693 2.39024 3.58685 3.06331 3.53410 3.16239 2.90080 2.73851 2.88930 2.52401 5.14347 3.52603\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.00000 *\n+ 1 2.59607 4.92242 2.42370 2.06211 4.20542 2.97244 3.58426 3.64457 2.34350 3.08648 4.00273 2.83124 3.36246 2.71842 2.86599 2.58986 2.76506 3.08094 5.41227 4.04008 1 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 2 3.03576 4.39346 4.59434 4.04652 3.28646 4.30384 4.70660 1.41946 3.92709 1.77014 2.47016 4.30324 4.58112 4.14365 4.11746 3.64457 3.27844 1.64195 5.22302 4.07944 2 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 3 3.03562 5.17077 0.85834 2.36166 4.55351 3.24309 3.96871 4.15143 3.06093 3.75205 4.73096 2.92024 3.89890 3.20783 3.58310 2.99303 3.37506 3.78599 5.71378 4.41914 3 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 4 3.06453 4.47116 4.39688 4.01420 3.40306 4.11301 4.73426 1.02625 3.84317 1.98019 3.33160 4.25350 4.53998 4.18696 4.03481 3.61235 3.36288 1.84728 5.30286 4.04495 4 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 5 1.95514 4.58778 2.97711 2.57269 4.11950 3.24697 3.73916 3.49394 1.97789 3.13679 3.98024 3.01544 3.78185 2.92180 2.83721 2.26740 2.83989 3.13314 5.37450 4.08708 5 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 6 2.35948 4.84175 2.08635 2.30697 4.28415 3.22780 3.67904 3.72097 2.54395 3.30433 4.11563 2.58441 3.75491 2.83444 3.03377 2.39414 2.44362 3.33038 5.51741 4.14574 6 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 7 2.98904 5.10923 2.50546 0.96581 4.46080 3.30161 3.89192 3.92322 2.77784 3.53336 4.50533 2.95703 3.90818 3.106'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 697 2.85950 5.41817 1.77098 1.66606 4.70378 3.19973 3.69724 4.21614 2.67125 3.71273 4.54423 2.10620 3.79561 2.85454 3.24714 2.75488 3.13769 3.79120 5.87336 4.38145 700 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 698 2.53289 4.73932 2.97701 2.28695 3.97216 3.40555 3.42753 3.37936 2.03144 2.98866 3.81671 2.94665 3.79978 2.69682 2.76298 2.63616 2.76065 2.82462 5.23317 3.43334 701 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 699 3.12120 4.46218 4.67243 4.14412 3.27811 4.40469 4.81155 1.32332 3.99661 1.48643 3.10119 4.40747 4.66856 4.23310 4.18488 3.76631 3.36798 1.74362 5.27978 4.10941 702 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 700 2.66539 4.97458 2.64529 1.97593 4.26871 3.32548 3.61124 3.70355 2.33461 3.26165 4.07282 2.62484 3.78740 2.51221 2.82904 2.56535 2.38808 3.34552 5.45928 4.09676 703 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 701 1.56653 4.13229 3.55960 3.13808 3.86701 3.08598 4.09427 2.98199 3.09286 2.88726 3.79986 3.33691 3.75095 3.40128 3.40074 2.21551 2.58828 2.16940 5.30556 4.08929 704 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 702 2.52867 4.19823 3.86515 3.34406 3.50213 3.61391 4.16495 2.02820 3.25182 2.39190 3.42324 3.62485 4.08266 3.55571 3.53347 2.74476 2.60594 1.53521 5.08003 3.86297 705 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 703 2.49514 4.59663 2.99099 2.15934 3.88128 3.36148 3.67372 3.22607 2.50098 2.90613 3.36952 2.99563 3.80292 2.86419 2.92025 2.49187 2.24977 2.93266 5.20514 3.90668 706 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03006 3.91545 4.63780 0.61958 0.77255 0.48576 0.95510\n+ 704 3.18289 4.54533 4.62800 4.10671 3.13972 4.39712 4.73895 1.66356 3.92640 1.11023 2.98413 4.38353 4.64976 4.15946 4.10174 3.76589 3.42466 2.00937 5.16696 3.99570 707 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02033 3.90572 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/788at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/788at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,772 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 788at186328\n+LENG 250\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:50 2019\n+NSEQ 25\n+EFFN 0.473022\n+CKSUM 1847839438\n+STATS LOCAL MSV -10.8494 0.70288\n+STATS LOCAL VITERBI -11.5235 0.70288\n+STATS LOCAL FORWARD -5.2598 0.70288\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.64317 4.55744 2.92982 2.73268 3.37905 2.72867 3.82569 2.62245 2.64156 2.36170 3.66030 2.98973 3.48620 3.11787 3.02512 2.70409 2.79427 2.53522 4.90481 3.63412\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.00000 *\n+ 1 2.91776 4.98642 3.17971 2.68250 4.37452 3.50782 3.61436 3.76859 1.25258 3.28027 4.17789 3.10575 3.94071 2.77186 2.09956 2.93638 3.12842 3.46070 5.36739 4.15822 1 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 2 2.53812 4.52281 3.08952 2.28990 3.47093 3.41818 3.50878 2.97723 2.49165 2.65540 3.61043 2.88919 3.80502 2.84385 2.75345 2.59774 2.76883 2.77474 5.04751 3.41862 2 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 3 2.79550 4.81522 2.94442 2.62094 3.85980 3.39782 3.72670 3.43591 2.36699 2.82499 3.98844 3.07604 3.90611 1.53709 2.65620 2.85139 3.07038 3.19898 5.21500 3.85513 3 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 4 2.91683 4.98319 3.17290 2.68216 4.37005 3.50417 3.61792 3.76603 1.24739 3.27985 4.17934 3.10582 3.94010 2.77649 2.11404 2.93622 3.12939 3.45848 5.36747 4.15723 4 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 5 2.83834 5.00567 2.85150 2.48791 4.31597 3.41866 3.61502 3.75390 1.89563 3.27220 4.15468 2.96860 3.88178 1.75337 2.40476 2.83662 3.06556 3.43399 5.40589 4.12387 5 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 6 2.64272 4.59281 3.07406 2.59834 3.78144 3.44121 3.66001 3.15668 2.30050 2.14659 3.70231 2.90605 3.85937 2.48897 2.70341 2.74519 2.80491 2.89923 5.10910 3.83484 6 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 7 2.40180 4.24675 3.40980 3.16112 3.95067 3.08666 4.17999 3.07525 3.10367 2.93948 3.99155 3.37371 3.78884 3.499'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 243 2.71131 5.05513 2.19662 2.28448 4.37357 3.32082 3.59103 3.81723 1.80657 3.34419 4.15931 2.81916 3.79090 2.72990 2.51807 2.68114 2.95038 3.44626 5.49811 4.14019 244 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 244 2.72425 4.48485 3.32919 3.16537 4.16195 3.17356 4.24438 3.70215 3.22091 3.33120 4.38031 3.47408 0.86777 3.61034 3.46863 2.89113 3.16421 3.34990 5.35407 4.28240 245 p - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 245 2.53887 4.59211 2.93016 2.55527 4.09711 3.24021 3.71528 3.49581 2.20732 3.12232 3.97440 2.99707 3.77722 2.90365 2.67648 1.76121 2.76396 3.14093 5.34587 4.06125 246 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 246 2.70157 5.06593 2.17120 1.80150 4.36222 3.24140 3.63553 3.80377 2.50901 3.36841 4.19218 2.73951 3.76567 2.71748 3.01184 2.66337 2.38784 3.43365 5.57307 4.16868 247 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 247 3.01472 4.43963 4.30527 3.92046 3.36024 4.04340 4.65266 1.10440 3.74817 1.95086 3.29915 4.16878 4.47685 4.09878 3.94717 3.53686 3.31435 1.84598 5.24654 3.98286 248 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 248 2.89194 5.34258 1.27542 1.91379 4.64012 3.16060 3.73825 4.13442 2.76787 3.69441 4.58040 2.65937 3.79288 2.92073 3.34224 2.79481 3.19180 3.74091 5.84573 4.38068 249 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 249 3.30127 4.68333 4.05937 3.76042 2.64568 3.70690 3.87469 3.32418 3.48317 2.72261 3.95894 3.91379 4.22293 3.87190 3.61516 3.50515 3.60065 3.21393 0.92890 2.64892 250 w - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03208 3.85139 4.57373 0.61958 0.77255 0.48576 0.95510\n+ 250 2.30503 4.22502 3.18849 3.00353 4.05542 2.95531 4.11385 3.57530 3.07587 3.29725 4.22526 3.23153 3.69243 3.42689 3.36239 1.12328 2.78363 3.11502 5.42965 4.13890 251 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02171 3.84102 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/855at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/855at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,697 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 855at186328\n+LENG 225\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:47 2019\n+NSEQ 25\n+EFFN 0.497437\n+CKSUM 4134969385\n+STATS LOCAL MSV -10.5421 0.70402\n+STATS LOCAL VITERBI -11.5428 0.70402\n+STATS LOCAL FORWARD -4.9300 0.70402\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.53769 4.40978 2.93794 2.75455 3.26076 2.89580 3.87925 2.64273 2.66102 2.36328 3.60054 3.07235 3.40213 3.11570 2.96280 2.69901 2.84004 2.58374 4.83502 3.48451\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.00000 *\n+ 1 2.69462 5.06968 1.93068 2.06048 4.35847 3.24903 3.63416 3.80458 2.51100 3.37143 4.18939 2.32812 3.76651 2.78467 3.02269 2.65641 2.95472 2.99548 5.57075 4.16079 1 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 2 3.03996 4.38992 4.58842 4.05491 3.34537 4.33064 4.76170 1.54050 3.93541 1.63373 3.16406 4.32332 4.61362 4.18152 4.14546 3.68209 3.28892 1.40218 5.29821 4.12118 2 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 3 3.07221 4.45191 4.49518 4.01700 3.28239 4.26745 4.70528 1.20939 3.82527 1.71107 3.17261 4.28092 4.59494 4.13883 4.02718 3.66326 3.33690 1.79110 5.23793 3.98934 3 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 4 2.67629 5.04830 2.55380 1.90575 4.35090 3.04838 3.58282 3.79603 2.06544 3.32430 4.12524 2.80217 3.77542 2.59650 2.69112 2.64548 2.83278 3.42066 5.49533 4.12301 4 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 5 3.00204 4.36804 4.56786 4.07352 3.45128 4.26220 4.81485 1.33759 3.94862 1.96814 3.27865 4.31802 4.60523 4.23079 4.16550 3.64412 3.27414 1.34716 5.39240 4.18178 5 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 6 2.79280 5.16909 1.85753 2.14259 4.49834 3.17062 3.72565 4.04531 2.70243 3.60253 4.46010 1.66663 3.78299 2.90531 3.23917 2.73353 3.09850 3.63859 5.73228 4.27677 6 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 7 3.25500 4.65751 4.23517 3.94914 1.01597 3.94545 3.87601 2.77897 3.85623 2.14961 3.50949 4.01623 4.40407 4.024'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 218 2.94999 5.06061 2.48640 1.02906 4.40649 3.27234 3.85887 3.85987 2.73906 3.47739 4.45149 2.93133 3.87679 3.07455 3.14767 2.93263 3.25419 3.54397 5.57855 4.30074 218 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 219 2.82908 5.30087 1.43723 2.09381 4.58590 3.19109 3.68657 4.09294 2.49189 3.61651 4.46069 2.50629 3.78520 2.74185 3.17443 2.74321 3.11007 3.69073 5.78160 4.31644 219 d - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 220 3.24328 4.73332 3.83438 3.56324 2.29349 3.82709 3.61722 3.25285 3.42084 2.70746 3.92814 3.72022 4.30098 3.72750 3.60509 3.38025 3.52994 3.12328 3.93717 0.97011 220 y - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 221 3.02908 4.44848 4.33207 3.94774 3.37240 4.06379 4.67631 1.08112 3.77583 1.95892 3.30812 4.19344 4.49521 4.12436 3.97269 3.55881 3.32827 1.84575 5.26272 4.00082 221 i - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 222 2.22117 4.16002 3.27665 2.98058 4.11527 2.94413 4.06654 3.45265 2.99594 3.20252 4.07187 3.20123 3.66087 3.33302 3.31100 1.51802 1.99762 2.99743 5.48008 4.23661 222 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 223 2.66161 4.43734 3.33486 3.23391 4.37634 0.73312 4.35438 3.97530 3.41484 3.62976 4.60545 3.49915 3.82840 3.73920 3.65120 2.83344 3.14264 3.50411 5.47221 4.47814 223 g - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 224 3.00247 4.84186 3.49285 3.00440 4.19578 3.49101 3.82228 3.73728 2.23618 3.25368 4.25388 3.36435 3.99369 3.04271 0.98235 3.08674 3.26858 3.46133 5.27985 4.12366 224 r - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03148 3.86988 4.59223 0.61958 0.77255 0.48576 0.95510\n+ 225 3.34637 4.68457 4.34275 3.96857 1.22967 4.16785 3.47953 3.03051 3.83330 2.40065 3.65468 3.90288 4.49852 3.90786 3.94286 3.52748 3.57786 2.96260 3.66965 1.64389 225 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02130 3.85970 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/903at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/903at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,835 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 903at186328\n+LENG 271\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:48 2019\n+NSEQ 25\n+EFFN 0.979614\n+CKSUM 2586427671\n+STATS LOCAL MSV -10.9081 0.70215\n+STATS LOCAL VITERBI -11.5253 0.70215\n+STATS LOCAL FORWARD -5.2523 0.70215\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.59260 4.53003 2.99815 2.67934 3.25944 3.03110 3.77293 2.51094 2.62358 2.34877 3.46666 3.11837 3.50697 3.14741 3.07477 2.75954 2.90120 2.49045 5.09469 3.34823\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.00000 *\n+ 1 2.80772 5.08252 2.26365 2.36624 4.65505 1.38380 3.91185 4.15479 2.88441 3.71460 4.55064 2.22973 3.89827 3.09119 3.40670 2.79739 3.15020 3.70664 5.88560 4.47223 1 g - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 2 2.51170 4.98704 2.52726 2.31878 4.27712 3.40732 3.61046 3.72465 2.30628 2.98643 4.04604 2.90104 3.80666 2.44633 2.75248 2.40286 2.36795 3.34836 5.45490 4.08096 2 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 3 2.68873 4.21128 3.96206 3.37816 3.27217 3.76773 4.04952 1.83803 2.88382 1.79047 2.93029 3.66391 4.12697 3.51862 3.21852 3.04824 2.91951 2.27124 4.82991 3.63798 3 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 4 3.22227 4.52069 5.00308 4.44044 2.76072 4.53908 4.89253 1.44630 4.31767 1.30930 3.07572 4.61557 4.76157 4.41811 4.40724 3.88661 3.45182 1.78568 5.22851 4.10823 4 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 5 2.15337 4.97304 2.72689 2.36990 4.25308 3.40954 3.15058 3.69779 2.25959 3.25017 4.03415 2.45572 3.81247 2.67196 2.86587 2.53986 2.86310 3.32962 5.44440 3.43305 5 a - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 6 2.91663 5.48914 1.91441 1.76013 4.79468 2.36461 3.77680 4.30745 2.71394 3.78840 4.59496 1.98881 3.89045 2.92102 3.28371 2.82045 3.18653 3.86920 5.94077 4.45603 6 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 7 3.01117 5.10821 3.31278 2.81774 4.53000 3.61466 3.76577 4.00065 2.15092 3.49187 4.36334 2.54476 4.06648 2.922'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 264 2.71206 4.22509 4.34685 3.78096 3.38965 3.98317 4.36259 1.66030 3.66348 1.82435 3.32057 3.99148 4.34014 3.89910 3.85197 3.03321 2.84374 1.62363 5.01951 3.82616 265 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 265 2.23683 4.23651 3.63671 3.06764 3.25552 2.56020 3.89926 2.49324 3.00535 2.23601 3.16342 3.42585 3.99565 3.29018 3.31873 2.74214 2.74674 2.29114 4.84913 3.62975 266 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.08434 4.17870 2.72473 0.61958 0.77255 0.48576 0.95510\n+ 266 2.82544 4.26522 4.29972 3.73070 2.39276 3.44150 4.21953 2.10910 3.60328 1.37436 3.10935 3.93732 4.28824 3.80338 3.77158 3.25601 3.05941 2.26976 4.78235 3.53709 267 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02446 4.11882 4.84117 0.61958 0.77255 0.44457 1.02471\n+ 267 2.71333 4.22390 4.45965 3.87575 2.72086 4.00499 4.33570 2.14999 3.74241 1.58107 2.75015 4.04328 4.33348 3.92106 3.87466 3.31223 2.79514 1.71797 4.89046 3.72909 268 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 268 2.47435 4.26427 4.57448 3.99894 2.48644 4.10713 4.45868 1.70019 3.86771 1.76758 3.18493 4.15901 4.42784 4.04649 3.99657 3.42420 3.12540 1.72909 4.98981 3.81769 269 i - - -\n+ 2.68620 4.42139 2.77522 2.73125 3.46356 2.40509 3.72497 3.29356 2.67743 2.69348 4.24692 2.90349 2.73742 3.18148 2.89803 2.37889 2.77522 2.98520 4.58479 3.61505\n+ 0.15471 1.99587 4.90105 0.30451 1.33746 0.48576 0.95510\n+ 269 2.45360 4.17756 4.19651 3.62052 3.06744 3.86660 4.19969 2.16853 3.50934 1.95023 3.12880 3.84505 4.22498 3.73864 3.70457 2.92987 2.96250 1.50556 4.87799 3.68432 271 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 270 2.86549 3.28835 4.67125 4.08163 2.71902 4.07968 4.42187 1.80253 3.92247 1.51087 2.83917 4.18056 4.39565 4.06187 3.99476 3.39838 3.09700 1.91208 4.89611 3.74449 272 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02302 4.17870 4.90105 0.61958 0.77255 0.48576 0.95510\n+ 271 3.29095 4.58836 5.00437 4.45870 3.33050 4.62771 5.03100 1.76823 4.33353 1.06864 3.11947 4.68284 4.84313 4.47634 4.46293 3.98967 3.52728 1.58780 5.37738 4.27537 273 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.01555 4.17124 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/90at186328.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/hmms/90at186328.hmm Mon Jan 20 09:55:04 2025 +0000 |
| [ |
| b'@@ -0,0 +1,1837 @@\n+HMMER3/f [3.1b2 | February 2015]\n+NAME 90at186328\n+LENG 605\n+ALPH amino\n+RF no\n+MM no\n+CONS yes\n+CS no\n+MAP yes\n+DATE Thu Apr 18 14:37:51 2019\n+NSEQ 24\n+EFFN 0.489258\n+CKSUM 2865302769\n+STATS LOCAL MSV -11.7860 0.69718\n+STATS LOCAL VITERBI -12.9122 0.69718\n+STATS LOCAL FORWARD -6.3838 0.69718\n+HMM A C D E F G H I K L M N P Q R S T V W Y \n+ m->m m->i m->d i->m i->i d->m d->d\n+ COMPO 2.56969 4.57296 2.90697 2.60091 3.41086 2.83774 3.88381 2.62529 2.62032 2.33756 3.65401 3.10461 3.45588 3.17734 2.86999 2.71276 2.92701 2.57651 4.95459 3.62393\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.00000 *\n+ 1 2.95109 4.50368 4.02434 3.61626 3.19802 3.81656 4.35685 2.37130 3.38553 1.79646 1.42373 3.89658 4.27724 3.76908 3.59356 3.29764 3.25604 2.37463 5.03557 3.79514 1 m - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 2 2.86900 5.37797 1.58880 1.57077 4.66411 3.16626 3.70360 4.16181 2.70572 3.69187 4.55254 2.64196 3.78166 2.87358 3.28095 2.76556 3.15682 3.75555 5.85155 4.37231 2 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 3 3.07300 4.49170 4.36797 3.86695 1.61951 4.13913 4.10824 2.21920 3.73119 1.65503 3.07826 4.05010 4.45065 3.91199 3.90796 3.47939 3.31749 2.22411 4.45442 2.94261 3 f - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 4 2.52287 4.68294 2.87746 2.46037 4.02360 3.31460 3.65054 3.41623 2.39881 2.95154 3.89217 2.68388 3.78693 2.28532 2.78394 2.63671 2.33102 3.09434 5.28959 3.98131 4 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 5 2.80994 5.05320 2.55709 2.07746 4.33179 3.31996 3.65042 3.78633 2.32914 3.32590 4.20860 2.85204 3.83696 1.73129 2.68425 2.78652 3.06127 3.45433 5.49486 4.15489 5 q - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 6 2.88484 5.06039 3.15616 2.59349 4.44851 3.52923 3.55116 3.82359 1.53648 3.29869 4.15011 3.04154 3.91608 2.25511 1.99894 2.87771 3.07066 3.49674 5.38789 4.16642 6 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 7 3.12918 4.59859 4.15163 3.79167 3.12725 3.95205 4.45479 2.33036 3.55963 0.90469 3.15808 4.06939 4.39165 3.933'..b'.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 598 2.98579 4.36041 4.53051 4.03623 3.43838 4.23326 4.78324 1.37179 3.91022 1.95985 3.26938 4.28470 4.58142 4.19587 4.13067 3.61398 3.25889 1.34731 5.37334 4.16066 598 v - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 599 2.11119 4.27525 3.06512 2.74779 4.10055 2.88797 3.91271 3.49386 2.80493 3.16708 4.00845 3.08167 3.67453 2.97757 3.16770 1.61132 2.52511 3.05712 5.42537 4.16702 599 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 600 2.70343 4.98987 2.36437 1.77707 4.40106 2.23290 3.69532 3.86007 2.58115 3.43036 4.27208 2.50991 3.76863 2.86730 3.05625 2.68219 3.00126 3.47185 5.61966 4.22836 600 e - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 601 2.29385 4.35296 3.10881 2.72964 4.06075 3.09873 3.84257 3.44474 2.63145 3.11296 3.96762 3.08596 3.71565 3.05981 2.65829 1.62812 2.61297 3.04742 5.36526 4.10207 601 s - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03216 3.84896 4.57131 0.61958 0.77255 0.48576 0.95510\n+ 602 2.44939 4.68406 2.87385 2.44120 4.04269 3.30548 3.64132 3.43610 2.20626 2.95896 3.89292 2.39211 3.77338 2.81127 2.80525 2.50675 2.51377 3.10451 5.30021 3.98990 602 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.07947 3.84896 2.89866 0.61958 0.77255 0.48576 0.95510\n+ 603 2.52488 4.81238 2.88439 2.51909 4.24782 3.33378 3.63966 3.61307 1.52689 3.21968 4.09250 2.85010 3.83306 2.80802 2.46735 2.74723 2.97742 3.27932 5.38364 4.10848 603 k - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03369 3.80318 4.52552 0.61958 0.77255 0.52490 0.89554\n+ 604 3.10025 4.55615 4.25984 3.80387 2.76754 4.11415 4.36261 2.20406 3.62622 1.05114 2.99724 4.07909 4.45468 3.90264 3.82600 3.52133 3.36217 2.25193 4.81866 3.45179 604 l - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.03369 3.80318 4.52552 0.61958 0.77255 0.52490 0.89554\n+ 605 2.66864 4.66015 2.67514 2.55447 4.01304 3.13952 3.86971 3.71006 2.76848 3.36538 4.32233 1.28705 3.78877 3.14373 3.11957 2.73938 3.04907 3.33930 5.32720 3.96743 605 n - - -\n+ 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503\n+ 0.02280 3.79229 * 0.61958 0.77255 0.00000 *\n+//\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/lengths_cutoff --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/lengths_cutoff Mon Jan 20 09:55:04 2025 +0000 |
| b |
| @@ -0,0 +1,332 @@ +2550at186328 0 7 70 +1013at186328 0 25 250 +722at186328 0 32 324 +215at186328 0 44 437 +1109at186328 0 21 211 +84at186328 0 56 561 +1248at186328 0 17 171 +378at186328 0 45 446 +252at186328 0 55 548 +197at186328 0 49 487 +1453at186328 0 16 164 +968at186328 0 23 230 +1379at186328 0 30 296 +436at186328 0 45 447 +1387at186328 0 18 184 +1357at186328 0 19 189 +1346at186328 0 140 466 +1681at186328 0 16 158 +2003at186328 0 18 176 +127at186328 0 53 529 +932at186328 0 23 225 +2115at186328 0 11 111 +2058at186328 0 11 106 +1794at186328 0 13 128 +1468at186328 0 17 170 +2249at186328 0 8 81 +667at186328 0 39 393 +1795at186328 0 22 215 +104at186328 0 61 614 +1104at186328 0 25 252 +2490at186328 0 8 76 +2293at186328 0 13 129 +504at186328 0 40 397 +564at186328 0 36 361 +1018at186328 0 43 427 +116at186328 0 54 535 +224at186328 0 43 433 +2011at186328 0 16 156 +1645at186328 0 13 130 +1840at186328 0 16 156 +910at186328 0 33 333 +1801at186328 0 20 197 +1758at186328 0 14 137 +1284at186328 0 20 200 +1810at186328 0 14 142 +1515at186328 0 27 203 +138at186328 0 55 546 +1674at186328 0 17 166 +176at186328 0 56 560 +289at186328 0 39 385 +0at186328 0 120 1198 +1027at186328 0 24 241 +768at186328 0 31 314 +416at186328 0 37 370 +336at186328 0 45 450 +137at186328 0 48 484 +1069at186328 0 23 234 +1088at186328 0 24 241 +2at186328 0 103 1033 +2429at186328 0 8 77 +1422at186328 0 20 195 +583at186328 0 34 335 +1814at186328 0 13 132 +1900at186328 0 30 187 +482at186328 0 36 364 +746at186328 0 31 313 +2670at186328 0 5 52 +6at186328 0 101 1014 +1659at186328 0 14 137 +2388at186328 0 8 79 +1759at186328 0 23 157 +2018at186328 0 13 127 +714at186328 0 47 292 +829at186328 0 23 228 +1316at186328 0 18 179 +2376at186328 0 7 71 +165at186328 0 51 513 +2153at186328 0 11 108 +394at186328 0 38 375 +920at186328 0 24 238 +462at186328 0 37 368 +904at186328 0 38 375 +1320at186328 0 20 201 +1993at186328 0 16 163 +514at186328 0 36 364 +762at186328 0 31 308 +1482at186328 0 16 159 +412at186328 0 38 380 +767at186328 0 29 288 +77at186328 0 70 702 +469at186328 0 36 361 +411at186328 0 40 396 +128at186328 0 54 535 +627at186328 0 37 367 +2114at186328 0 10 104 +1330at186328 0 22 218 +1490at186328 0 14 142 +1851at186328 0 15 150 +2318at186328 0 11 111 +314at186328 0 39 390 +1213at186328 0 23 230 +1385at186328 0 28 277 +1988at186328 0 10 103 +1472at186328 0 18 180 +1049at186328 0 36 359 +1974at186328 0 11 108 +2411at186328 0 10 101 +2624at186328 0 8 81 +1114at186328 0 21 213 +1943at186328 0 19 189 +447at186328 0 44 444 +2470at186328 0 7 72 +2211at186328 0 9 89 +903at186328 0 27 271 +696at186328 0 27 272 +1781at186328 0 18 178 +2141at186328 0 25 250 +1436at186328 0 18 184 +1567at186328 0 16 161 +483at186328 0 37 367 +1508at186328 0 16 164 +1337at186328 0 23 225 +956at186328 0 25 248 +802at186328 0 25 252 +769at186328 0 28 283 +1529at186328 0 17 166 +2304at186328 0 12 119 +387at186328 0 43 426 +686at186328 0 34 339 +941at186328 0 29 286 +858at186328 0 34 339 +900at186328 0 25 249 +855at186328 0 23 225 +1521at186328 0 15 145 +784at186328 0 24 239 +74at186328 0 73 725 +1441at186328 0 19 192 +887at186328 0 27 270 +478at186328 0 37 373 +1779at186328 0 16 160 +1653at186328 0 19 191 +2558at186328 0 5 54 +788at186328 0 25 249 +919at186328 0 27 268 +82at186328 0 63 625 +2185at186328 0 22 215 +1278at186328 0 21 212 +90at186328 0 64 583 +2363at186328 0 8 84 +2329at186328 0 9 88 +1250at186328 0 20 200 +1875at186328 0 14 135 +1966at186328 0 16 157 +697at186328 0 48 258 +2299at186328 0 9 89 +50at186328 0 62 618 +76at186328 0 80 801 +1225at186328 0 19 187 +1370at186328 0 19 190 +19at186328 0 84 841 +2581at186328 0 7 65 +1971at186328 0 13 128 +253at186328 0 52 518 +1707at186328 0 12 124 +862at186328 0 25 248 +1751at186328 0 24 243 +820at186328 0 25 250 +1194at186328 0 21 207 +163at186328 0 59 593 +1221at186328 0 26 264 +791at186328 0 26 257 +1688at186328 0 16 157 +2645at186328 0 13 128 +998at186328 0 24 236 +741at186328 0 37 366 +980at186328 0 34 341 +132at186328 0 60 599 +1778at186328 0 18 175 +1022at186328 0 21 211 +2038at186328 0 12 118 +661at186328 0 31 314 +1476at186328 0 17 174 +1867at186328 0 12 119 +348at186328 0 41 405 +943at186328 0 27 271 +1849at186328 0 12 118 +305at186328 0 44 435 +2222at186328 0 10 100 +225at186328 0 55 548 +1120at186328 0 19 193 +1921at186328 0 12 124 +2543at186328 0 5 48 +179at186328 0 47 472 +154at186328 0 54 541 +631at186328 0 30 303 +1816at186328 0 13 128 +144at186328 0 54 538 +272at186328 0 77 773 +2397at186328 0 7 74 +1009at186328 0 25 254 +444at186328 0 41 407 +1536at186328 0 16 159 +1249at186328 0 20 195 +1365at186328 0 16 164 +2365at186328 0 7 68 +702at186328 0 31 305 +1598at186328 0 16 157 +1413at186328 0 20 204 +1354at186328 0 21 207 +848at186328 0 25 246 +169at186328 0 55 549 +1465at186328 0 18 175 +1223at186328 0 20 203 +1187at186328 0 24 243 +1164at186328 0 26 257 +671at186328 0 28 280 +689at186328 0 29 286 +1775at186328 0 21 212 +978at186328 0 27 268 +254at186328 0 45 445 +748at186328 0 28 275 +496at186328 0 33 333 +1414at186328 0 20 196 +2662at186328 0 9 94 +1399at186328 0 18 175 +497at186328 0 33 310 +886at186328 0 31 307 +2380at186328 0 8 80 +355at186328 0 36 364 +494at186328 0 33 333 +30at186328 0 81 814 +869at186328 0 27 269 +310at186328 0 39 390 +130at186328 0 54 535 +2074at186328 0 11 105 +238at186328 0 74 413 +1227at186328 0 21 206 +2265at186328 0 8 76 +531at186328 0 33 334 +58at186328 0 70 703 +2158at186328 0 8 82 +963at186328 0 23 225 +2192at186328 0 10 97 +1948at186328 0 11 112 +108at186328 0 72 718 +2571at186328 0 6 64 +1788at186328 0 18 177 +1392at186328 0 21 208 +251at186328 0 49 493 +296at186328 0 43 429 +297at186328 0 42 416 +675at186328 0 28 284 +1944at186328 0 13 131 +626at186328 0 30 304 +644at186328 0 34 338 +131at186328 0 56 555 +2025at186328 0 11 114 +964at186328 0 27 270 +1665at186328 0 24 241 +1317at186328 0 31 310 +822at186328 0 36 363 +45at186328 0 67 667 +1408at186328 0 25 246 +1400at186328 0 20 195 +1296at186328 0 22 224 +2279at186328 0 16 161 +1651at186328 0 18 181 +561at186328 0 35 354 +276at186328 0 50 495 +830at186328 0 25 250 +1402at186328 0 96 378 +2062at186328 0 11 109 +736at186328 0 30 295 +282at186328 0 42 423 +2234at186328 0 8 76 +2085at186328 0 12 116 +173at186328 0 49 485 +1010at186328 0 23 232 +2502at186328 0 9 68 +505at186328 0 42 421 +1126at186328 0 27 190 +537at186328 0 30 296 +613at186328 0 33 334 +368at186328 0 38 383 +1478at186328 0 25 248 +588at186328 0 32 324 +1550at186328 0 38 384 +421at186328 0 36 355 +1571at186328 0 18 179 +912at186328 0 25 253 +2107at186328 0 11 114 +1602at186328 0 18 184 +2465at186328 0 6 63 +218at186328 0 45 447 +41at186328 0 70 697 +809at186328 0 30 303 +897at186328 0 33 327 +2224at186328 0 8 76 +600at186328 0 28 284 +700at186328 0 33 334 +379at186328 0 40 395 +2084at186328 0 10 101 +1615at186328 0 16 161 +1878at186328 0 13 130 +554at186328 0 37 367 +1450at186328 0 16 162 +2636at186328 0 6 55 +781at186328 0 32 321 +1036at186328 0 28 276 +1792at186328 0 12 117 +2580at186328 0 5 49 +835at186328 0 28 279 +1218at186328 0 22 215 +103at186328 0 68 675 +982at186328 0 26 258 +1804at186328 0 17 172 +1766at186328 0 24 238 +2108at186328 0 13 125 +33at186328 0 75 751 +437at186328 0 36 357 +1577at186328 0 16 161 +400at186328 0 36 356 +2154at186328 0 13 129 +629at186328 0 35 351 +40at186328 0 75 751 +764at186328 0 26 263 +1809at186328 0 13 132 +942at186328 0 26 260 +244at186328 0 50 496 +530at186328 0 29 289 +48at186328 0 76 756 +2165at186328 0 13 130 |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/links_to_ODB10.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/links_to_ODB10.txt Mon Jan 20 09:55:04 2025 +0000 |
| b |
| b"@@ -0,0 +1,332 @@\n+0at186328\tDNA polymerase III PolC-type\thttps://v10-1.orthodb.org/?query=0at186328\n+1009at186328\tCobalt ABC transporter permease\thttps://v10-1.orthodb.org/?query=1009at186328\n+1010at186328\tATP synthase, F1 complex, gamma subunit\thttps://v10-1.orthodb.org/?query=1010at186328\n+1013at186328\tHAD superfamily\thttps://v10-1.orthodb.org/?query=1013at186328\n+1018at186328\tRibonuclease Y\thttps://v10-1.orthodb.org/?query=1018at186328\n+1022at186328\tTranscriptional regulator\thttps://v10-1.orthodb.org/?query=1022at186328\n+1027at186328\tPseudouridine synthase\thttps://v10-1.orthodb.org/?query=1027at186328\n+1036at186328\t3'-5' exoribonuclease YhaM\thttps://v10-1.orthodb.org/?query=1036at186328\n+103at186328\tPhenylalanine--tRNA ligase beta subunit\thttps://v10-1.orthodb.org/?query=103at186328\n+1049at186328\t16S rRNA (cytosine(967)-C(5))-methyltransferase\thttps://v10-1.orthodb.org/?query=1049at186328\n+104at186328\tRelA/SpoT\thttps://v10-1.orthodb.org/?query=104at186328\n+1069at186328\tPrimosomal protein DnaI\thttps://v10-1.orthodb.org/?query=1069at186328\n+1088at186328\tHeat shock protein Hsp33\thttps://v10-1.orthodb.org/?query=1088at186328\n+108at186328\tValine--tRNA ligase\thttps://v10-1.orthodb.org/?query=108at186328\n+1104at186328\ttRNA pseudouridine synthase B\thttps://v10-1.orthodb.org/?query=1104at186328\n+1109at186328\tUridylate kinase\thttps://v10-1.orthodb.org/?query=1109at186328\n+1114at186328\tmetallophosphoesterase\thttps://v10-1.orthodb.org/?query=1114at186328\n+1120at186328\tribonuclease III\thttps://v10-1.orthodb.org/?query=1120at186328\n+1126at186328\tGTP cyclohydrolase 1 type 2/Nif3\thttps://v10-1.orthodb.org/?query=1126at186328\n+1164at186328\tGTPase Era\thttps://v10-1.orthodb.org/?query=1164at186328\n+116at186328\tTransketolase\thttps://v10-1.orthodb.org/?query=116at186328\n+1187at186328\tRiboflavin kinase\thttps://v10-1.orthodb.org/?query=1187at186328\n+1194at186328\tK Homology domain\thttps://v10-1.orthodb.org/?query=1194at186328\n+1213at186328\tRegulator of K+ conductance, C-terminal\thttps://v10-1.orthodb.org/?query=1213at186328\n+1218at186328\tMethionine aminopeptidase\thttps://v10-1.orthodb.org/?query=1218at186328\n+1221at186328\tSpermidine/putrescine ABC transporter permease\thttps://v10-1.orthodb.org/?query=1221at186328\n+1223at186328\tPutative choline kinase\thttps://v10-1.orthodb.org/?query=1223at186328\n+1225at186328\tATP synthase, F0 complex, subunit A\thttps://v10-1.orthodb.org/?query=1225at186328\n+1227at186328\tPseudouridine synthase\thttps://v10-1.orthodb.org/?query=1227at186328\n+1248at186328\tUracil-DNA glycosylase\thttps://v10-1.orthodb.org/?query=1248at186328\n+1249at186328\tNH(3)-dependent NAD(+) synthetase\thttps://v10-1.orthodb.org/?query=1249at186328\n+1250at186328\ttRNA/rRNA methyltransferase\thttps://v10-1.orthodb.org/?query=1250at186328\n+1278at186328\tTriosephosphate isomerase\thttps://v10-1.orthodb.org/?query=1278at186328\n+127at186328\tRibonuclease J\thttps://v10-1.orthodb.org/?query=127at186328\n+1284at186328\tPPM-type phosphatase domain\thttps://v10-1.orthodb.org/?query=1284at186328\n+128at186328\tATPase, AAA-type, conserved site\thttps://v10-1.orthodb.org/?query=128at186328\n+1296at186328\t16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase\thttps://v10-1.orthodb.org/?query=1296at186328\n+130at186328\ttRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG\thttps://v10-1.orthodb.org/?query=130at186328\n+1316at186328\tZinc metalloprotease\thttps://v10-1.orthodb.org/?query=1316at186328\n+1317at186328\tChaperone protein DnaJ\thttps://v10-1.orthodb.org/?query=1317at186328\n+131at186328\tDNA ligase\thttps://v10-1.orthodb.org/?query=131at186328\n+1320at186328\tMethyltransferase\thttps://v10-1.orthodb.org/?query=1320at186328\n+132at186328\tRibonuclease R\thttps://v10-1.orthodb.org/?query=132at186328\n+1330at186328\tRNA-binding S4 domain\thttps://v10-1.orthodb.org/?query=1330at186328\n+1337at186328\t1-acyl-sn-glycerol-3-phosphate acyltransferase\thttps://v10-1.orthodb.org/?query=1337at186328\n+1346at186328\tMetallo-beta-lactamase\thttps://v10-1.orthodb.org/?query=1346"..b'://v10-1.orthodb.org/?query=768at186328\n+769at186328\tGlycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal\thttps://v10-1.orthodb.org/?query=769at186328\n+76at186328\tDNA-directed DNA polymerase\thttps://v10-1.orthodb.org/?query=76at186328\n+77at186328\tP-type ATPase\thttps://v10-1.orthodb.org/?query=77at186328\n+781at186328\tAcetate kinase\thttps://v10-1.orthodb.org/?query=781at186328\n+784at186328\tEnergy-coupling factor transporter ATP-binding protein EcfA\thttps://v10-1.orthodb.org/?query=784at186328\n+788at186328\tABC transporter ATP-binding protein\thttps://v10-1.orthodb.org/?query=788at186328\n+791at186328\ttRNA N6-adenosine threonylcarbamoyltransferase\thttps://v10-1.orthodb.org/?query=791at186328\n+802at186328\tRibosomal protein L2\thttps://v10-1.orthodb.org/?query=802at186328\n+809at186328\tPhosphate acyltransferase\thttps://v10-1.orthodb.org/?query=809at186328\n+820at186328\tFAD/NAD(P)-binding domain\thttps://v10-1.orthodb.org/?query=820at186328\n+822at186328\tGlycosyl transferase family 3, N-terminal domain\thttps://v10-1.orthodb.org/?query=822at186328\n+829at186328\tFormamidopyrimidine-DNA glycosylase\thttps://v10-1.orthodb.org/?query=829at186328\n+82at186328\tElongation factor G\thttps://v10-1.orthodb.org/?query=82at186328\n+830at186328\tThymidylate synthase\thttps://v10-1.orthodb.org/?query=830at186328\n+835at186328\tGTP binding domain\thttps://v10-1.orthodb.org/?query=835at186328\n+848at186328\tRibosome biogenesis GTPase RsgA\thttps://v10-1.orthodb.org/?query=848at186328\n+84at186328\tExodeoxyribonuclease V subunit alpha\thttps://v10-1.orthodb.org/?query=84at186328\n+855at186328\tABC transporter-like\thttps://v10-1.orthodb.org/?query=855at186328\n+858at186328\tBeta sliding clamp\thttps://v10-1.orthodb.org/?query=858at186328\n+862at186328\tElongation factor Ts\thttps://v10-1.orthodb.org/?query=862at186328\n+869at186328\tHeat-inducible transcription repressor HrcA\thttps://v10-1.orthodb.org/?query=869at186328\n+886at186328\tGlyceraldehyde-3-phosphate dehydrogenase\thttps://v10-1.orthodb.org/?query=886at186328\n+887at186328\tFructose-bisphosphate aldolase\thttps://v10-1.orthodb.org/?query=887at186328\n+897at186328\tMetal-dependent hydrolase\thttps://v10-1.orthodb.org/?query=897at186328\n+900at186328\tHPr kinase/phosphorylase\thttps://v10-1.orthodb.org/?query=900at186328\n+903at186328\tSerine/threonine protein kinase\thttps://v10-1.orthodb.org/?query=903at186328\n+904at186328\tUncharacterised membrane protein YitT\thttps://v10-1.orthodb.org/?query=904at186328\n+90at186328\tClpA/B, conserved site 2\thttps://v10-1.orthodb.org/?query=90at186328\n+910at186328\ttRNA sulfurtransferase ThiI\thttps://v10-1.orthodb.org/?query=910at186328\n+912at186328\tSporulation regulator WhiA, C-terminal\thttps://v10-1.orthodb.org/?query=912at186328\n+919at186328\tMethionyl-tRNA formyltransferase\thttps://v10-1.orthodb.org/?query=919at186328\n+920at186328\tECF transporter, substrate-specific component-like\thttps://v10-1.orthodb.org/?query=920at186328\n+932at186328\tprotein-(glutamine-N5) methyltransferase, release factor-specific\thttps://v10-1.orthodb.org/?query=932at186328\n+941at186328\tEnergy-coupling factor transporter ATP-binding protein EcfA\thttps://v10-1.orthodb.org/?query=941at186328\n+942at186328\tDNA polymerase III subunit delta\thttps://v10-1.orthodb.org/?query=942at186328\n+943at186328\tRibosome biogenesis GTPase A\thttps://v10-1.orthodb.org/?query=943at186328\n+956at186328\tAP endonuclease 2\thttps://v10-1.orthodb.org/?query=956at186328\n+963at186328\tDegV\thttps://v10-1.orthodb.org/?query=963at186328\n+964at186328\tS-adenosyl-L-methionine-dependent methyltransferase\thttps://v10-1.orthodb.org/?query=964at186328\n+968at186328\tTatD family\thttps://v10-1.orthodb.org/?query=968at186328\n+978at186328\tProtein RecA\thttps://v10-1.orthodb.org/?query=978at186328\n+980at186328\tInner membrane zinc metalloprotease\thttps://v10-1.orthodb.org/?query=980at186328\n+982at186328\tL-lactate dehydrogenase\thttps://v10-1.orthodb.org/?query=982at186328\n+998at186328\tTetrahydrofolate dehydrogenase/cyclohydrolase\thttps://v10-1.orthodb.org/?query=998at186328\n' |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/refseq_db.faa.gz |
| b |
| Binary file test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/refseq_db.faa.gz has changed |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/scores_cutoff --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test-db/busco_downloads/lineages/entomoplasmatales_odb10/scores_cutoff Mon Jan 20 09:55:04 2025 +0000 |
| b |
| @@ -0,0 +1,332 @@ +2550at186328 98.14 +1013at186328 229.46 +722at186328 224.84 +215at186328 498.33 +1109at186328 220.99 +84at186328 316.19 +1248at186328 172.41 +378at186328 496.79 +252at186328 656.67 +197at186328 459.2 +1453at186328 137.48 +968at186328 211.68 +1379at186328 236.95 +436at186328 426.02 +1387at186328 221.48 +1357at186328 230.58 +1346at186328 57.47 +1681at186328 116.2 +2003at186328 141.82 +127at186328 710.15 +932at186328 183.82 +2115at186328 96.74 +2058at186328 96.6 +1794at186328 170.66 +1468at186328 204.26 +2249at186328 87.29 +667at186328 368.76 +1795at186328 125.44 +104at186328 622.16 +1104at186328 220.78 +2490at186328 99.4 +2293at186328 110.81 +504at186328 480.34 +564at186328 358.54 +1018at186328 389.62 +116at186328 576.8 +224at186328 576.31 +2011at186328 76.44 +1645at186328 87.08 +1840at186328 176.82 +910at186328 347.41 +1801at186328 179.13 +1758at186328 133.42 +1284at186328 177.38 +1810at186328 143.01 +1515at186328 171.363850149 +138at186328 394.45 +1674at186328 176.61 +176at186328 665.91 +289at186328 413.98 +0at186328 1331.26 +1027at186328 240.52 +768at186328 208.67 +416at186328 303.31 +336at186328 511.49 +137at186328 486.36 +1069at186328 165.76 +1088at186328 195.02 +2at186328 1300.6 +2429at186328 70.49 +1422at186328 243.53 +583at186328 357.28 +1814at186328 165.55 +1900at186328 32.13 +482at186328 402.92 +746at186328 312.41 +2670at186328 75.11 +6at186328 1246.0 +1659at186328 181.3 +2388at186328 86.03 +1759at186328 49.21 +2018at186328 107.59 +714at186328 95.76 +829at186328 179.2 +1316at186328 145.53 +2376at186328 64.33 +165at186328 652.12 +2153at186328 138.88 +394at186328 460.46 +920at186328 189.49 +462at186328 385.14 +904at186328 224.98 +1320at186328 159.32 +1993at186328 140.49 +514at186328 383.39 +762at186328 351.89 +1482at186328 149.31 +412at186328 359.31 +767at186328 316.68 +77at186328 648.06 +469at186328 340.41 +411at186328 476.42 +128at186328 695.17 +627at186328 384.23 +2114at186328 132.93 +1330at186328 209.58 +1490at186328 153.3 +1851at186328 117.95 +2318at186328 109.62 +314at186328 441.49 +1213at186328 252.35 +1385at186328 205.03 +1988at186328 94.78 +1472at186328 151.83 +1049at186328 277.76 +1974at186328 119.84 +2411at186328 82.46 +2624at186328 98.21 +1114at186328 221.48 +1943at186328 126.56 +447at186328 455.63 +2470at186328 49.98 +2211at186328 83.93 +903at186328 149.73 +696at186328 219.38 +1781at186328 189.77 +2141at186328 167.86 +1436at186328 170.87 +1567at186328 185.29 +483at186328 293.37 +1508at186328 200.06 +1337at186328 247.38 +956at186328 237.72 +802at186328 337.75 +769at186328 267.26 +1529at186328 184.59 +2304at186328 79.31 +387at186328 476.07 +686at186328 374.92 +941at186328 362.18 +858at186328 283.08 +900at186328 231.0 +855at186328 281.12 +1521at186328 147.98 +784at186328 269.99 +74at186328 658.14 +1441at186328 130.34 +887at186328 323.75 +478at186328 315.07 +1779at186328 119.21 +1653at186328 206.43 +2558at186328 72.38 +788at186328 325.01 +919at186328 248.15 +82at186328 876.12 +2185at186328 129.5 +1278at186328 231.0 +90at186328 338.03 +2363at186328 80.08 +2329at186328 72.03 +1250at186328 166.53 +1875at186328 119.07 +1966at186328 142.73 +697at186328 14.56 +2299at186328 85.61 +50at186328 738.29 +76at186328 744.87 +1225at186328 177.45 +1370at186328 231.91 +19at186328 1040.2 +2581at186328 61.74 +1971at186328 135.45 +253at186328 387.17 +1707at186328 144.27 +862at186328 241.22 +1751at186328 196.84 +820at186328 235.97 +1194at186328 256.48 +163at186328 548.31 +1221at186328 286.58 +791at186328 267.4 +1688at186328 140.49 +2645at186328 91.42 +998at186328 191.52 +741at186328 332.22 +980at186328 317.59 +132at186328 548.03 +1778at186328 144.34 +1022at186328 169.54 +2038at186328 97.51 +661at186328 320.53 +1476at186328 80.78 +1867at186328 94.08 +348at186328 495.88 +943at186328 259.77 +1849at186328 111.86 +305at186328 455.7 +2222at186328 113.26 +225at186328 347.34 +1120at186328 187.18 +1921at186328 126.56 +2543at186328 74.69 +179at186328 359.8 +154at186328 661.71 +631at186328 368.83 +1816at186328 150.15 +144at186328 698.25 +272at186328 575.19 +2397at186328 53.06 +1009at186328 284.27 +444at186328 423.22 +1536at186328 194.88 +1249at186328 224.42 +1365at186328 152.74 +2365at186328 63.42 +702at186328 347.27 +1598at186328 150.85 +1413at186328 270.34 +1354at186328 165.62 +848at186328 208.04 +169at186328 638.61 +1465at186328 143.99 +1223at186328 120.61 +1187at186328 129.5 +1164at186328 252.49 +671at186328 324.73 +689at186328 334.46 +1775at186328 174.09 +978at186328 218.82 +254at186328 541.38 +748at186328 302.05 +496at186328 291.13 +1414at186328 222.32 +2662at186328 79.31 +1399at186328 185.78 +497at186328 288.54 +886at186328 372.75 +2380at186328 113.96 +355at186328 430.57 +494at186328 386.96 +30at186328 745.22 +869at186328 235.13 +310at186328 477.75 +130at186328 626.5 +2074at186328 102.27 +238at186328 59.01 +1227at186328 199.71 +2265at186328 111.02 +531at186328 298.83 +58at186328 725.9 +2158at186328 101.78 +963at186328 172.97 +2192at186328 127.26 +1948at186328 102.48 +108at186328 817.04 +2571at186328 70.28 +1788at186328 139.86 +1392at186328 165.97 +251at186328 596.26 +296at186328 587.58 +297at186328 539.56 +675at186328 361.13 +1944at186328 176.47 +626at186328 328.3 +644at186328 389.41 +131at186328 562.24 +2025at186328 146.93 +964at186328 260.05 +1665at186328 185.5 +1317at186328 269.08 +822at186328 375.48 +45at186328 611.66 +1408at186328 226.8 +1400at186328 147.7 +1296at186328 191.59 +2279at186328 153.16 +1651at186328 118.09 +561at186328 364.77 +276at186328 519.4 +830at186328 283.43 +1402at186328 13.16 +2062at186328 142.38 +736at186328 282.03 +282at186328 463.75 +2234at186328 60.34 +2085at186328 150.29 +173at186328 523.81 +1010at186328 232.61 +2502at186328 55.72 +505at186328 428.89 +1126at186328 66.08 +537at186328 339.92 +613at186328 344.82 +368at186328 454.3 +1478at186328 212.38 +588at186328 385.7 +1550at186328 242.97 +421at186328 428.82 +1571at186328 119.0 +912at186328 210.77 +2107at186328 55.09 +1602at186328 192.85 +2465at186328 89.32 +218at186328 459.83 +41at186328 835.1 +809at186328 308.42 +897at186328 320.53 +2224at186328 54.18 +600at186328 330.19 +700at186328 177.87 +379at186328 459.48 +2084at186328 117.67 +1615at186328 144.48 +1878at186328 103.95 +554at186328 422.94 +1450at186328 191.52 +2636at186328 79.31 +781at186328 290.78 +1036at186328 258.79 +1792at186328 154.98 +2580at186328 44.94 +835at186328 207.76 +1218at186328 226.1 +103at186328 533.82 +982at186328 278.6 +1804at186328 151.06 +1766at186328 194.11 +2108at186328 100.52 +33at186328 785.4 +437at186328 484.26 +1577at186328 202.93 +400at186328 341.18 +2154at186328 114.59 +629at186328 325.29 +40at186328 809.13 +764at186328 234.57 +1809at186328 110.88 +942at186328 156.1 +244at186328 432.39 +530at186328 294.91 +48at186328 885.01 +2165at186328 133.98 |
| b |
| diff -r 8f20a5b9b282 -r 7109a27a11db test-data/test-db/busco_downloads/placement_files/list_of_reference_markers.eukaryota_odb10.2019-12-16.txt --- a/test-data/test-db/busco_downloads/placement_files/list_of_reference_markers.eukaryota_odb10.2019-12-16.txt Wed Jul 24 17:43:14 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,116 +0,0 @@ -1001705at2759 -100698at2759 -1010730at2759 -1018517at2759 -1019762at2759 -1032689at2759 -1041560at2759 -1047278at2759 -1057950at2759 -1079130at2759 -1079827at2759 -1087488at2759 -1090038at2759 -1096688at2759 -1106766at2759 -1121868at2759 -1138059at2759 -1161199at2759 -1178688at2759 -1182767at2759 -1193442at2759 -1194691at2759 -1197019at2759 -1204472at2759 -1217666at2759 -1220881at2759 -1222562at2759 -1228942at2759 -1233814at2759 -1247641at2759 -1248958at2759 -1259741at2759 -1260807at2759 -1264469at2759 -1266231at2759 -1269649at2759 -1275099at2759 -1287401at2759 -1304061at2759 -1309031at2759 -1320891at2759 -1324510at2759 -1342242at2759 -1346165at2759 -1346432at2759 -1358374at2759 -1370285at2759 -1370304at2759 -1372185at2759 -1377237at2759 -1379600at2759 -1404162at2759 -1405073at2759 -142542at2759 -1428505at2759 -1434266at2759 -1441854at2759 -1445102at2759 -1474000at2759 -1483558at2759 -1490022at2759 -156083at2759 -1567796at2759 -176625at2759 -245208at2759 -257318at2759 -296129at2759 -299766at2759 -320059at2759 -345441at2759 -369837at2759 -375960at2759 -392369at2759 -39650at2759 -418107at2759 -426305at2759 -453044at2759 -491869at2759 -513979at2759 -543764at2759 -570797at2759 -582756at2759 -598949at2759 -673132at2759 -692986at2759 -708105at2759 -719531at2759 -720340at2759 -721605at2759 -734341at2759 -734666at2759 -736068at2759 -751335at2759 -777920at2759 -794860at2759 -814241at2759 -816895at2759 -817008at2759 -834694at2759 -83779at2759 -869548at2759 -878143at2759 -911863at2759 -918816at2759 -923657at2759 -924753at2759 -937686at2759 -944899at2759 -946128at2759 -960696at2759 -973442at2759 -974865at2759 -975158at2759 -975557at2759 -976469at2759 -981902at2759 |