| Previous changeset 3:56f1b7f06222 (2019-03-05) Next changeset 5:343bce47219b (2019-03-05) |
|
Commit message:
Fixed config builder tags |
|
modified:
galaxy/tools/config_builder/config_builder.xml |
| b |
| diff -r 56f1b7f06222 -r 727c0e52e64e galaxy/tools/config_builder/config_builder.xml --- a/galaxy/tools/config_builder/config_builder.xml Tue Mar 05 03:41:14 2019 -0500 +++ b/galaxy/tools/config_builder/config_builder.xml Tue Mar 05 03:48:13 2019 -0500 |
| b |
| @@ -17,51 +17,51 @@ --basequal $snippy.basequal --mincov $snippy.mincov --minfrac $snippy.minfrac - #endif + #end if $snippy.snp_fine --snp_thresh $snippy.snp_threshold - #endif + #end if #if mentalist.mentalist_checkbox --mentalist #if mentalist.db_loc.db_selector == "local_file" --local_file --local_db $mentalist.mlst_database - #endif + #end if #if mentalist.db_loc.db_selector == "build_db" --build_db --kmer $mentalist.k --fasta_files $mentalist.fasta_files --profile $mentalist.profile - #endif + #end if #if mentalist.db_loc.db_selector == "download_pubmlst" --download_pubmlst --kmer $mentalist.k --scheme $mentalist.scheme - #endif + #end if #if mentalist.db_loc.db_selector == "download_cgmlst" --download_cgmlst --kmer $mentalist.k --scheme $mentalist.scheme - #endif + #end if #if mentalist.db_loc.db_selector == "download_enterobase" --download_enterobase $mentalist.k --entero_scheme $mentalist.scheme --entero_type $mentalist.type - #endif + #end if #if mentalist.mentalist_adv.mentalist_adv_checkbox --mutation_threshold $mentalist.mutation_thresh --kt $mentalist.kt - #endif + #end if $mentalist.mlst_fine --mlst_thresh $mentalist.mlst_threshold - #endif + #end if #if prince.prince_checkbox --prince $prince.cnv_fine --cnv_thresh $prince.cnv_threshold - #endif + #end if #if kwip.kwip_checkbox --kwip @@ -70,25 +70,25 @@ --x $kwip.x --ksize $kwip.ksize --unique_kmers $kwip.unique_kmers - #endif + #end if $kwip.kwip_fine --kwip_thresh $kwip.kwip_threshold - #endif + #end if #if spotyping.spotyping_checkbox --spotyping $spotyping.spoligo_fine --spoligo_thresh $spotyping.spoligo_threshold - #endif + #end if #if adv_clustering.adv_clustering_checkbox $adv_clustering.all_constraints --method $adv_clustering.method $adv_clustering.presolve $adv_clustering.visualize - #endif + #end if - blank_onfig.yaml + blank_config.yaml $forward $reverse config.yaml |