| Previous changeset 1:fcd5d259427c (2020-12-29) Next changeset 3:c47762435082 (2020-12-30) |
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Commit message:
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 8b18552f6d2b2261efebe1075ff4c18a295b94dd" |
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modified:
PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py |
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removed:
PDAUG_TSVtoFASTA/test-data/test1/Negative.fasta PDAUG_TSVtoFASTA/test-data/test1/Positive.fasta |
| b |
| diff -r fcd5d259427c -r 728e04b97852 PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py --- a/PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py Tue Dec 29 04:05:22 2020 +0000 +++ b/PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py Tue Dec 29 18:20:59 2020 +0000 |
| [ |
| @@ -21,14 +21,16 @@ l.append(line.split('\t')[1].strip('\n').strip('\r')) l = list(set(l)) + print(l) + for line in lines: - if l[0] in line.split('\t')[1].strip('\n').strip('\r'): + if l[1] in line.split('\t')[1].strip('\n').strip('\r'): n= n+1 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n') of1.write(line.split('\t')[0]+'\n') - if l[1] in line.split('\t')[1].strip('\n').strip('\r'): + if l[0] in line.split('\t')[1].strip('\n').strip('\r'): m= m+1 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n') of2.write(line.split('\t')[0]+'\n') |
| b |
| diff -r fcd5d259427c -r 728e04b97852 PDAUG_TSVtoFASTA/test-data/test1/Negative.fasta --- a/PDAUG_TSVtoFASTA/test-data/test1/Negative.fasta Tue Dec 29 04:05:22 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,24 +0,0 @@ ->peptide_1 -GLFDIVKKVVGALG ->peptide_2 -KLLKLLKKKLLK ->peptide_3 -KLLLLKLLK ->peptide_4 -GLFDIVKKVVGALG ->peptide_5 -GLFDIVKKVVGALG ->peptide_6 -KLLKLLKKKLLK ->peptide_7 -KLLLLKLLK ->peptide_8 -GLFDIVKKVVGALG ->peptide_9 -GLFDIVKKVVGALG ->peptide_10 -KLLKLLKKKLLK ->peptide_11 -KLLLLKLLK ->peptide_12 -GLFDIVKKVVGALG |
| b |
| diff -r fcd5d259427c -r 728e04b97852 PDAUG_TSVtoFASTA/test-data/test1/Positive.fasta --- a/PDAUG_TSVtoFASTA/test-data/test1/Positive.fasta Tue Dec 29 04:05:22 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,22 +0,0 @@ ->peptide_1 -GLFDIVKKVVGALG ->peptide_2 -KLLKLLKKKLLK ->peptide_3 -KLLLLKLLK ->peptide_4 -GLFDIVKKVVGALG ->peptide_5 -GLFDIVKKVVGALG ->peptide_6 -KLLKLLKKKLLK ->peptide_7 -KLLLLKLLK ->peptide_8 -GLFDIVKKVVGALG ->peptide_9 -KLLKLLKKKLLK ->peptide_10 -KLLLLKLLK ->peptide_11 -GLFDIVKKVVGALG |