| Previous changeset 3:679a4b0041a4 (2013-06-20) Next changeset 5:39416af5d0bc (2013-06-24) |
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Commit message:
Uploaded |
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modified:
dbtoolkit-4.2/lib/jargs-1.0.jar |
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added:
#env.sh# dbtoolkit-4.2/lib/jargs-1.0.jar~ tool_dependencies.xml |
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| diff -r 679a4b0041a4 -r 733c4ee877a4 #env.sh# --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/#env.sh# Mon Jun 24 12:39:12 2013 -0400 |
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| @@ -0,0 +1,3 @@ + +export PATH=/path/to/2134123412341/tint_proteomics_scripts/:$PATH + |
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| diff -r 679a4b0041a4 -r 733c4ee877a4 dbtoolkit-4.2/lib/jargs-1.0.jar |
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| Binary file dbtoolkit-4.2/lib/jargs-1.0.jar has changed |
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| diff -r 679a4b0041a4 -r 733c4ee877a4 dbtoolkit-4.2/lib/jargs-1.0.jar~ |
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| Binary file dbtoolkit-4.2/lib/jargs-1.0.jar~ has changed |
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| diff -r 679a4b0041a4 -r 733c4ee877a4 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jun 24 12:39:12 2013 -0400 |
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| @@ -0,0 +1,48 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="SearchGUI" version="1.13.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip</action> + <action type="shell_command">tar -xf SearchGUI-1.13.1_mac_and_linux.tar</action> + <action type="shell_command">cd SearchGUI-1.13.1_mac_and_linux</action> + <action type="shell_command">chmod -R o+w resources</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="shell_command">mkdir -p $BIN_DIR</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool. + (https://github.com/jmchilton/peptide-shaker). + + </readme> + </package> + + <package name="PeptideShaker" version="0.20.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action> + <action type="shell_command">chmod -R o+w resources</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/</destination_directory> + </action> + <action type="shell_command">mkdir -p $BIN_DIR</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework. + (https://github.com/jmchilton/peptide-shaker). + + </readme> + </package> +</tool_dependency> |