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Commit message:
"planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad" |
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modified:
funannotate_predict.xml macros.xml |
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| diff -r 33092577d65d -r 73909ee8162e funannotate_predict.xml --- a/funannotate_predict.xml Thu Oct 21 07:32:20 2021 +0000 +++ b/funannotate_predict.xml Thu Nov 18 21:59:41 2021 +0000 |
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| @@ -177,7 +177,7 @@ </when> </conditional> <param argument="--p2g_pident" type="integer" value="80" label="Exonerate percent identity (for proteins)" /> - <param argument="--p2g_prefilter" type="select" label="Prefilter hists with (for proteins)"> + <param argument="--p2g_prefilter" type="select" label="Prefilter hits with (for proteins)"> <option value="diamond" selected="True">Diamond</option> <option value="tblastn">tblastn (slower)</option> </param> |
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| diff -r 33092577d65d -r 73909ee8162e macros.xml --- a/macros.xml Thu Oct 21 07:32:20 2021 +0000 +++ b/macros.xml Thu Nov 18 21:59:41 2021 +0000 |
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| b'@@ -155,5 +155,200 @@\n <option value="embryophyta">embryophyta</option>\n <option value="protists">protists</option>\n <option value="alveolata_stramenophiles">alveolata_stramenophiles</option>\n+ <!-- These datasets are additional BUSCO orthodb 10 datasets, they are not yet bundled\n+ with funannonate db, but they can be used safely. -->\n+ <option value="acidobacteria_odb10">acidobacteria (orthodb 10)</option>\n+ <option value="aconoidasida_odb10">aconoidasida (orthodb 10)</option>\n+ <option value="actinobacteria_class_odb10">actinobacteria_class (orthodb 10)</option>\n+ <option value="actinobacteria_phylum_odb10">actinobacteria_phylum (orthodb 10)</option>\n+ <option value="actinopterygii_odb10">actinopterygii (orthodb 10)</option>\n+ <option value="agaricales_odb10">agaricales (orthodb 10)</option>\n+ <option value="agaricomycetes_odb10">agaricomycetes (orthodb 10)</option>\n+ <option value="alphabaculovirus_odb10">alphabaculovirus (orthodb 10)</option>\n+ <option value="alphaherpesvirinae_odb10">alphaherpesvirinae (orthodb 10)</option>\n+ <option value="alphaproteobacteria_odb10">alphaproteobacteria (orthodb 10)</option>\n+ <option value="alteromonadales_odb10">alteromonadales (orthodb 10)</option>\n+ <option value="alveolata_odb10">alveolata (orthodb 10)</option>\n+ <option value="apicomplexa_odb10">apicomplexa (orthodb 10)</option>\n+ <option value="aquificae_odb10">aquificae (orthodb 10)</option>\n+ <option value="arachnida_odb10">arachnida (orthodb 10)</option>\n+ <option value="archaea_odb10">archaea (orthodb 10)</option>\n+ <option value="arthropoda_odb10">arthropoda (orthodb 10)</option>\n+ <option value="ascomycota_odb10">ascomycota (orthodb 10)</option>\n+ <option value="aves_odb10">aves (orthodb 10)</option>\n+ <option value="aviadenovirus_odb10">aviadenovirus (orthodb 10)</option>\n+ <option value="bacillales_odb10">bacillales (orthodb 10)</option>\n+ <option value="bacilli_odb10">bacilli (orthodb 10)</option>\n+ <option value="bacteria_odb10">bacteria (orthodb 10)</option>\n+ <option value="bacteroidales_odb10">bacteroidales (orthodb 10)</option>\n+ <option value="bacteroidetes-chlorobi_group_odb10">bacteroidetes-chlorobi_group (orthodb 10)</option>\n+ <option value="bacteroidetes_odb10">bacteroidetes (orthodb 10)</option>\n+ <option value="bacteroidia_odb10">bacteroidia (orthodb 10)</option>\n+ <option value="baculoviridae_odb10">baculoviridae (orthodb 10)</option>\n+ <option value="basidiomycota_odb10">basidiomycota (orthodb 10)</option>\n+ <option value="bclasvirinae_odb10">bclasvirinae (orthodb 10)</option>\n+ <option value="betabaculovirus_odb10">betabaculovirus (orthodb 10)</option>\n+ <option value="betaherpesvirinae_odb10">betaherpesvirinae (orthodb 10)</option>\n+ <option value="betaproteobacteria_odb10">betaproteobacteria (orthodb 10)</option>\n+ <option value="boletales_odb10">boletales (orthodb 10)</option>\n+ <option value="brassicales_odb10">brassicales (orthodb 10)</option>\n+ <option value="burkholderiales_odb10">burkholderiales (orthodb 10)</option>\n+ <option value="campylobacterales_odb10">campylobacterales (orthodb 10)</option>\n+ <option value="capnodiales_odb10">capnodiales (orthodb 10)</option>\n+ <option value="carnivora_odb10">carnivora (orthodb 10)</option>\n+ <option value="cellvibrionales_odb10">cellvibrionales (orthodb 10)</option>\n+ <option value="cetartiodactyla_odb10">cetartiodactyla (orthodb 10)</option>\n+ <option value="chaetothyriales_odb10">chaetothyriales (orthodb 10)</option>\n+ <option value="cheoctovirus_odb10">cheoctovirus (orthodb 10)</option>\n+ <option value="chlamydiae_odb10">chlamydiae (orthodb 10)</option>\n+ <op'..b'seudomonadales_odb10">pseudomonadales (orthodb 10)</option>\n+ <option value="rhizobiales_odb10">rhizobiales (orthodb 10)</option>\n+ <option value="rhizobium-agrobacterium_group_odb10">rhizobium-agrobacterium_group (orthodb 10)</option>\n+ <option value="rhodobacterales_odb10">rhodobacterales (orthodb 10)</option>\n+ <option value="rhodospirillales_odb10">rhodospirillales (orthodb 10)</option>\n+ <option value="rickettsiales_odb10">rickettsiales (orthodb 10)</option>\n+ <option value="rudiviridae_odb10">rudiviridae (orthodb 10)</option>\n+ <option value="saccharomycetes_odb10">saccharomycetes (orthodb 10)</option>\n+ <option value="sauropsida_odb10">sauropsida (orthodb 10)</option>\n+ <option value="selenomonadales_odb10">selenomonadales (orthodb 10)</option>\n+ <option value="simplexvirus_odb10">simplexvirus (orthodb 10)</option>\n+ <option value="skunavirus_odb10">skunavirus (orthodb 10)</option>\n+ <option value="solanales_odb10">solanales (orthodb 10)</option>\n+ <option value="sordariomycetes_odb10">sordariomycetes (orthodb 10)</option>\n+ <option value="sphingobacteriia_odb10">sphingobacteriia (orthodb 10)</option>\n+ <option value="sphingomonadales_odb10">sphingomonadales (orthodb 10)</option>\n+ <option value="spirochaetales_odb10">spirochaetales (orthodb 10)</option>\n+ <option value="spirochaetes_odb10">spirochaetes (orthodb 10)</option>\n+ <option value="spirochaetia_odb10">spirochaetia (orthodb 10)</option>\n+ <option value="spounavirinae_odb10">spounavirinae (orthodb 10)</option>\n+ <option value="stramenopiles_odb10">stramenopiles (orthodb 10)</option>\n+ <option value="streptomycetales_odb10">streptomycetales (orthodb 10)</option>\n+ <option value="streptosporangiales_odb10">streptosporangiales (orthodb 10)</option>\n+ <option value="sulfolobales_odb10">sulfolobales (orthodb 10)</option>\n+ <option value="synechococcales_odb10">synechococcales (orthodb 10)</option>\n+ <option value="synergistetes_odb10">synergistetes (orthodb 10)</option>\n+ <option value="tenericutes_odb10">tenericutes (orthodb 10)</option>\n+ <option value="tequatrovirus_odb10">tequatrovirus (orthodb 10)</option>\n+ <option value="teseptimavirus_odb10">teseptimavirus (orthodb 10)</option>\n+ <option value="tetrapoda_odb10">tetrapoda (orthodb 10)</option>\n+ <option value="tevenvirinae_odb10">tevenvirinae (orthodb 10)</option>\n+ <option value="thaumarchaeota_odb10">thaumarchaeota (orthodb 10)</option>\n+ <option value="thermoanaerobacterales_odb10">thermoanaerobacterales (orthodb 10)</option>\n+ <option value="thermoplasmata_odb10">thermoplasmata (orthodb 10)</option>\n+ <option value="thermoproteales_odb10">thermoproteales (orthodb 10)</option>\n+ <option value="thermoprotei_odb10">thermoprotei (orthodb 10)</option>\n+ <option value="thermotogae_odb10">thermotogae (orthodb 10)</option>\n+ <option value="thiotrichales_odb10">thiotrichales (orthodb 10)</option>\n+ <option value="tissierellales_odb10">tissierellales (orthodb 10)</option>\n+ <option value="tissierellia_odb10">tissierellia (orthodb 10)</option>\n+ <option value="tremellomycetes_odb10">tremellomycetes (orthodb 10)</option>\n+ <option value="tunavirinae_odb10">tunavirinae (orthodb 10)</option>\n+ <option value="varicellovirus_odb10">varicellovirus (orthodb 10)</option>\n+ <option value="verrucomicrobia_odb10">verrucomicrobia (orthodb 10)</option>\n+ <option value="vertebrata_odb10">vertebrata (orthodb 10)</option>\n+ <option value="vibrionales_odb10">vibrionales (orthodb 10)</option>\n+ <option value="viridiplantae_odb10">viridiplantae (orthodb 10)</option>\n+ <option value="xanthomonadales_odb10">xanthomonadales (orthodb 10)</option>\n </xml>\n </macros>\n' |