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Commit message:
Imported from capsule None |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 741836b9e2c5 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 06 11:44:21 2015 -0400 |
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| @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="commet" version="24.7.14"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://github.com/pierrepeterlongo/commet/archive/master.zip</action> + <action type="shell_command">make</action> + + <!-- move directories into $INSTALL_DIR --> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + + <!-- move files into $INSTALL_DIR --> + <action type="move_file"> + <source>dendro.R</source> + <destination>$INSTALL_DIR/Rscript</destination> + </action> + + <action type="move_file"> + <source>heatmap.r</source> + <destination>$INSTALL_DIR/Rscript</destination> + </action> + <action type="move_file"> + <source>Commet.py</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="shell_command">chmod +x $INSTALL_DIR/Commet.py</action> + + + <!-- create env.sh --> + <action type="set_environment"> + <!--environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable--> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/</environment_variable> + <environment_variable name="BINARIES" action="set_to">$INSTALL_DIR/bin/</environment_variable> + <environment_variable name="RSCRIPTS" action="set_to">$INSTALL_DIR/Rscript/</environment_variable> + </action> + </actions> + </install> + <readme> + This package installs commet from the sources available in the commet Github project + </readme> + </package> +</tool_dependency> |