Repository 'ezbamqc'
hg clone https://toolshed.g2.bx.psu.edu/repos/youngkim/ezbamqc

Changeset 14:744987262771 (2016-03-30)
Previous changeset 13:391ea77bd930 (2016-03-30) Next changeset 15:28cebcc7f774 (2016-03-30)
Commit message:
Uploaded
added:
cshl_rRNA_BED.loc.sample
b
diff -r 391ea77bd930 -r 744987262771 cshl_rRNA_BED.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/cshl_rRNA_BED.loc.sample Wed Mar 30 12:15:03 2016 -0400
b
@@ -0,0 +1,19 @@
+##
+## Location of rRNA BED files
+##
+## Format is:
+##  value<TAB>Name<TAB>dbkey<TAB>ID
+##
+##  Name can contain spaces
+
+#/localdata1/annotations/BED_files/rRNA/hg19_rmsk_rRNA.bed hg38 repeatMasker rRNA hg38 hg38_rRNA
+/localdata1/annotations/BED_files/rRNA/hg19_rmsk_rRNA.bed hg19 repeatMasker rRNA hg19 hg19_rRNA
+/localdata1/annotations/BED_files/rRNA/hg18_rmsk_rRNA.bed hg18 repeatMasker rRNA hg18 hg18_rRNA
+/localdata1/annotations/BED_files/rRNA/mm10_rmsk_rRNA.bed mm10 repeatMasker rRNA mm10 mm10_rRNA
+/localdata1/annotations/BED_files/rRNA/mm9_rmsk_rRNA.bed mm9 repeatMasker rRNA mm9 mm9_rRNA
+#/localdata1/annotations/BED_files/rRNA/dm6_rmsk_rRNA.bed dm6 repeatMasker rRNA dm6 dm6_rRNA
+/localdata1/annotations/BED_files/rRNA/dm3_rmsk_rRNA.bed dm3 repeatMasker rRNA dm3 dm3_rRNA
+/localdata1/annotations/BED_files/rRNA/rn5_rmsk_rRNA.bed rn5 repeatMasker rRNA rn5 rn5_rRNA
+#/localdata1/annotations/BED_files/rRNA/rn4_rmsk_rRNA.bed rn4 repeatMasker rRNA rn4 rn4_rRNA
+#/localdata1/annotations/BED_files/rRNA/ce6_rmsk_rRNA.bed ce6 repeatMasker rRNA ce6 ce6_rRNA
+#/localdata1/annotations/BED_files/rRNA/ce10_rmsk_rRNA.bed ce10 repeatMasker rRNA ce10 ce10_rRNA
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