| Previous changeset 34:96c1276ceefe (2016-12-16) Next changeset 36:43d182135230 (2016-12-16) |
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Commit message:
Uploaded |
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modified:
wrapper.sh |
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| diff -r 96c1276ceefe -r 744e5e2e3556 wrapper.sh --- a/wrapper.sh Fri Dec 16 09:53:09 2016 -0500 +++ b/wrapper.sh Fri Dec 16 10:00:10 2016 -0500 |
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| @@ -41,13 +41,13 @@ tar -xJf $input -C "$PWD/files/$title" fi -cat `find $PWD/files/ -name "1_*"` > $PWD/summary.txt -cat `find $PWD/files/ -name "3_*"` > $PWD/sequences.txt -cat `find $PWD/files/ -name "5_*"` > $PWD/aa.txt -cat `find $PWD/files/ -name "6_*"` > $PWD/junction.txt -cat `find $PWD/files/ -name "7_*"` > $PWD/mutationanalysis.txt -cat `find $PWD/files/ -name "8_*"` > $PWD/mutationstats.txt -cat `find $PWD/files/ -name "10_*"` > $PWD/hotspots.txt +cat "`find $PWD/files/ -name "1_*"`" > $PWD/summary.txt +cat "`find $PWD/files/ -name "3_*"`" > $PWD/sequences.txt +cat "`find $PWD/files/ -name "5_*"`" > $PWD/aa.txt +cat "`find $PWD/files/ -name "6_*"`" > $PWD/junction.txt +cat "`find $PWD/files/ -name "7_*"`" > $PWD/mutationanalysis.txt +cat "`find $PWD/files/ -name "8_*"`" > $PWD/mutationstats.txt +cat "`find $PWD/files/ -name "10_*"`" > $PWD/hotspots.txt if [[ ${#BLASTN_DIR} -ge 5 ]] ; then echo "On server, using BLASTN_DIR env: ${BLASTN_DIR}" |