| Previous changeset 3:419027d822d6 (2022-04-10) Next changeset 5:4c07ddedc198 (2023-03-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/datamash commit 384736acb5d2ae31d796c53031fad0e5da5424e3 |
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modified:
datamash-ops.xml macros.xml |
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added:
test-data/na_values_input.tsv |
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| diff -r 419027d822d6 -r 746e8e4bf929 datamash-ops.xml --- a/datamash-ops.xml Sun Apr 10 11:41:19 2022 +0000 +++ b/datamash-ops.xml Fri Jul 01 16:18:07 2022 +0000 |
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| @@ -13,6 +13,7 @@ $need_sort $print_full_line $ignore_case + $narm @FIELD_SEPARATOR@ #if str($grouping) != '' --group '$grouping' @@ -41,6 +42,7 @@ <param argument="--header-out" type="boolean" truevalue="--header-out" falsevalue="" label="Print header line" /> <param argument="--full" name="print_full_line" type="boolean" truevalue="--full" falsevalue="" label="Print all fields from input file" /> <param argument="--ignore-case" type="boolean" truevalue="--ignore-case" falsevalue="" label="Ignore case when grouping" /> + <param argument="--narm" type="boolean" truevalue="--narm" falsevalue="" label="Skip NA or NaN values" /> <repeat name="operations" default="1" min="1" title="Operation to perform on each group"> <param name="op_name" type="select" label="Type"> <option value="count">count</option> @@ -123,6 +125,25 @@ </assert_contents> </output> </test> + <test><!-- test with a file containing NA and NaN values and the -narm parameter " --> + <param name="in_file" value="na_values_input.tsv" ftype="tabular" /> + <param name="grouping" value="2" /> + <param name="header_in" value="true" /> + <param name="print_full_line" value="false" /> + <param name="need_sort" value="true" /> + <param name="narm" value="true" /> + <repeat name="operations"> + <param name="op_name" value="mean" /> + <param name="op_column" value="3" /> + </repeat> + <output name="out_file" ftype="tabular"> + <assert_contents> + <has_n_lines n="2"/> + <has_line_matching expression="DE\t173.5"/> + <has_line_matching expression="NL\t177.5"/> + </assert_contents> + </output> + </test> </tests> <help> <![CDATA[ |
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| diff -r 419027d822d6 -r 746e8e4bf929 macros.xml --- a/macros.xml Sun Apr 10 11:41:19 2022 +0000 +++ b/macros.xml Fri Jul 01 16:18:07 2022 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.1.0</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">21.01</token> <xml name="inputs_outputs"> <inputs> |
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| diff -r 419027d822d6 -r 746e8e4bf929 test-data/na_values_input.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/na_values_input.tsv Fri Jul 01 16:18:07 2022 +0000 |
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| @@ -0,0 +1,7 @@ +Name Country Height +Alice NL 178 +Bob DE 165 +Charlie NL NA +Doris DE 182 +Eve NL 177 +Francis DE NaN |