| Previous changeset 0:8c682b3a7c5b (2016-04-19) Next changeset 2:9d363eb081b5 (2016-04-28) |
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Commit message:
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modified:
mutspecAnnot.xml mutspecCompare.xml mutspecFilter.xml mutspecNmf.xml mutspecSplit.xml mutspecStat.xml |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecAnnot.xml --- a/mutspecAnnot.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecAnnot.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -169,4 +169,15 @@ </help> +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecCompare.xml --- a/mutspecCompare.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecCompare.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -106,4 +106,16 @@ </help> + +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> \ No newline at end of file |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecFilter.xml --- a/mutspecFilter.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecFilter.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -12,7 +12,7 @@ $segDup $esp $thG - #if $FilterdbSNP.dbSNP == "true": + #if $FilterdbSNP.dbSNP == True: --dbSNP ${FilterdbSNP.column} #else --dbSNP 0 @@ -94,4 +94,15 @@ </help> +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecNmf.xml --- a/mutspecNmf.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecNmf.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -105,4 +105,16 @@ </help> + +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecSplit.xml --- a/mutspecSplit.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecSplit.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -82,4 +82,16 @@ </help> + +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> |
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| diff -r 8c682b3a7c5b -r 748b7a8b634c mutspecStat.xml --- a/mutspecStat.xml Tue Apr 19 03:07:11 2016 -0400 +++ b/mutspecStat.xml Thu Apr 21 09:36:32 2016 -0400 |
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| @@ -14,7 +14,7 @@ mutspecStat_wrapper.sh $html ${GALAXY_DATA_INDEX_DIR}/shared/ucsc/chrom/ - #if $estimateSignature.estimSign == "true": + #if $estimateSignature.estimSign == True: ${estimateSignature.estimT} #else 0 @@ -154,4 +154,15 @@ </help> +<citations> + <citation type="bibtex"> + @ARTICLE{ardin_mutspec:_2016, + author = {Ardin et al}, + keywords = {Galaxy, Mutation signatures, Mutation spectra, Single base substitutions}, + title = {{MutSpec}: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes}, + url = {http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1011-z} + } + </citation> +</citations> + </tool> |