| Previous changeset 7:b6b5cd37f2a2 (2023-10-20) Next changeset 9:3bbe70fef6df (2023-12-11) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c |
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modified:
funannotate_annotate.xml macros.xml |
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| diff -r b6b5cd37f2a2 -r 756376aeb1ae funannotate_annotate.xml --- a/funannotate_annotate.xml Fri Oct 20 10:07:28 2023 +0000 +++ b/funannotate_annotate.xml Wed Nov 01 09:52:58 2023 +0000 |
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| @@ -3,6 +3,7 @@ <macros> <import>macros.xml</import> </macros> + <expand macro="biotools" /> <requirements> <expand macro="requirements" /> </requirements> @@ -66,7 +67,7 @@ #if $remove: --remove '${remove}' #end if - +--header_length $header_length --cpus \${GALAXY_SLOTS:-2} && @@ -112,8 +113,6 @@ </when> </conditional> - - <param name="database" label="Funannotate database" type="select"> <options from_data_table="funannotate"> <column name="value" index="0" /> @@ -144,6 +143,7 @@ <param argument="--fix" type="data" format="tabular" optional="true" label="Gene/Product names fixed" help="TSV: GeneID Name Product" /> <param argument="--remove" type="data" format="tabular" optional="true" label="Gene/Product names to remove" help="TSV: Gene Product" /> + <param argument="--header_length" type="integer" value="16" min="1" label="Maximum length of FASTA headers" help="The NCBI max FASTA header length is 16. Increase if you don't submit to NCBI." /> <param name="outputs" type="select" optional="true" multiple="true" label="Which outputs should be generated"> <option value="gbk" selected="true">Annotated genome (genbank)</option> <option value="annotations">TSV file of all annotations added to genome. (i.e. import into excel)</option> |
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| diff -r b6b5cd37f2a2 -r 756376aeb1ae macros.xml --- a/macros.xml Fri Oct 20 10:07:28 2023 +0000 +++ b/macros.xml Wed Nov 01 09:52:58 2023 +0000 |
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| @@ -1,8 +1,14 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.8.15</token> - <token name="@VERSION_SUFFIX@">2</token> - + <token name="@VERSION_SUFFIX@">3</token> + <xml name="biotools"> + <xrefs> + <xref type="bio.tools"> + funannotate + </xref> + </xrefs> + </xml> <xml name="requirements"> <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement> </xml> |