| Previous changeset 10:8dca3a43f177 (2024-01-03) Next changeset 12:4ca9252178df (2024-01-03) |
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modified:
tassel.xml |
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| diff -r 8dca3a43f177 -r 75948ef196f9 tassel.xml --- a/tassel.xml Wed Jan 03 09:31:49 2024 +0000 +++ b/tassel.xml Wed Jan 03 10:22:35 2024 +0000 |
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| @@ -2,7 +2,7 @@ <description>Software to evaluate traits associations, evolutionary patterns, and linkage disequilibrium</description> <requirements> <requirement type="package" version="5.2.89">tassel</requirement> - <requirement type="package" version="1.8.0.242.b08">openjdk</requirement> + <requirement type="package" version="1.8.0.242.b08">java-1.8.0-openjdk-devel-cos7-s390x</requirement> </requirements> <stdio> @@ -10,7 +10,7 @@ <exit_code range="1:" level="fatal" /> </stdio> - <command detect_errors="exit_code"><![CDATA[./tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ + <command>tassel.sh $analysis_opts.fonction_selector $output1 $output2 $output3 $log tmpdir$$/ #if $analysis_opts.fonction_selector == "mlm": -fork1 -h $hapmap -filterAlign -filterAlignMinFreq $filterAlignMinFreq -fork2 -r $analysis_opts.trait @@ -49,7 +49,7 @@ -fork1 -h $hapmap -ck -export tmpdir$$/kinship -runfork1 #end if - ]]></command> + </command> <inputs> <param format="txt" name="hapmap" type="data" label="HapMap file"/> <conditional name="analysis_opts"> |