| Previous changeset 1:9a0d83c1b4b3 (2022-04-22) Next changeset 3:2ec9253a647e (2022-09-20) |
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Commit message:
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1 |
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modified:
ramclustr.xml ramclustr_wrapper.R |
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| diff -r 9a0d83c1b4b3 -r 75dafb766417 ramclustr.xml --- a/ramclustr.xml Fri Apr 22 13:48:56 2022 +0000 +++ b/ramclustr.xml Wed Jun 29 10:00:10 2022 +0000 |
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| @@ -1,4 +1,5 @@ -<tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy0"> +<tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy1"> + <description>A feature clustering algorithm for non-targeted mass spectrometric metabolomics data.</description> <macros> <import>macros.xml</import> </macros> |
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| diff -r 9a0d83c1b4b3 -r 75dafb766417 ramclustr_wrapper.R --- a/ramclustr_wrapper.R Fri Apr 22 13:48:56 2022 +0000 +++ b/ramclustr_wrapper.R Wed Jun 29 10:00:10 2022 +0000 |
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| @@ -7,8 +7,8 @@ write.csv(ramclustr_obj$SpecAbund, file = output_spec_abundance, row.names = TRUE) if (!is.null(msp_file)) { - exp.name <- ramclustr_obj$ExpDes[[1]][which(row.names(ramclustr_obj$ExpDes[[1]]) == "Experiment"), 1] - filename <- paste("spectra/", exp.name, ".msp", sep = "") + exp_name <- ramclustr_obj$ExpDes[[1]][which(row.names(ramclustr_obj$ExpDes[[1]]) == "Experiment"), 1] + filename <- paste("spectra/", exp_name, ".msp", sep = "") file.copy(from = filename, to = msp_file, overwrite = TRUE) } } |