| Previous changeset 0:9d4f20618ab4 (2017-11-26) Next changeset 2:774d9cbe6937 (2018-03-07) |
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Commit message:
planemo upload commit 5774fd6a5a746f36f6bf4671a51a39ea2b978300-dirty |
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modified:
venn_diagram.xml |
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added:
test-data/Bredberg.txt test-data/ID_Converter_FKW_Lacombe_et_al_2017_OK.txt test-data/Mucilli.txt test-data/Venn_diagram_html.html test-data/Venn_text_output.txt |
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removed:
test-data/DESeq.txt test-data/FQ.txt test-data/RPKM.txt test-data/TC.txt test-data/TMM.txt test-data/UQ.txt test-data/venn_diagram_summary.html test-data/venn_diagram_text_output.txt |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/Bredberg.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Bredberg.txt Fri Feb 16 03:37:16 2018 -0500 |
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| @@ -0,0 +1,121 @@ +P04637 +P31947 +P63104 +P60709 +P43652 +P02763 +P04217 +P01023 +P04083 +P07355 +P12429 +P08758 +P01008 +P02647 +P02649 +P05089 +P61769 +Q13867 +P27482 +P07339 +P00450 +Q9NSK0 +P10909 +P23528 +P02747 +P06681 +P01024 +P0C0L4 +P0C0L5 +Q15517 +P22528 +P01036 +Q9UGM3 +Q02413 +Q86SJ6 +P61916 +A2IPI6 +P04117 +Q01469 +Q5D862 +Q8NF17 +Q08380 +P04406 +P11217 +P00738 +P07900 +P08238 +P68871 +P02790 +B4E1Z4 +P04196 +P62807 +P62805 +Q86YZ3 +P05362 +P01880 +P01765 +P01598 +P01613 +P01611 +P01617 +P01621 +P06313 +P01625 +P15814 +P80748 +P01714 +P01717 +A4F255 +P01591 +P19827 +P01011 +P01009 +P02751 +P06396 +P02774 +P01871 +Q14624 +Q13835 +P15924 +P02788 +P04233 +P31025 +P00338 +P61626 +P22897 +Q9UL86 +Q9UL77 +Q9UL83 +P59665 +P80188 +O95613 +Q96S96 +P05155 +P01833 +P07737 +P12273 +Q16378 +P02760 +P05109 +Q08188 +P00734 +Q8IWL2 +P11686 +A0A0U1RVJ5 +Q6N093 +Q6MZX7 +Q7Z351 +A0N5G5 +P02787 +Q96P63 +P02768 +P01622 +Q9BYE4 +Q9UBC9 +O95436 +P10599 +P02766 +Q13885 +P25311 +Q96DA0 |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/DESeq.txt --- a/test-data/DESeq.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1249 +0,0 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| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/FQ.txt --- a/test-data/FQ.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1092 +0,0 @@\n-G000002\n-G000005\n-G000008\n-G000009\n-G000012\n-G000022\n-G000023\n-G000024\n-G000026\n-G000027\n-G000028\n-G000029\n-G000030\n-G000031\n-G000041\n-G000046\n-G000061\n-G000078\n-G000082\n-G000098\n-G000101\n-G000116\n-G000144\n-G000147\n-G000164\n-G000165\n-G000167\n-G000177\n-G000180\n-G000181\n-G000185\n-G000186\n-G000194\n-G000195\n-G000203\n-G000218\n-G000231\n-G000232\n-G000236\n-G000237\n-G000238\n-G000253\n-G000254\n-G000256\n-G000259\n-G000261\n-G000262\n-G000268\n-G000270\n-G000273\n-G000274\n-G000276\n-G000301\n-G000302\n-G000305\n-G000306\n-G000311\n-G000316\n-G000317\n-G000318\n-G000323\n-G000338\n-G000339\n-G000352\n-G000355\n-G000356\n-G000358\n-G000362\n-G000365\n-G000370\n-G000376\n-G000377\n-G000381\n-G000391\n-G000404\n-G000405\n-G000411\n-G000412\n-G000418\n-G000420\n-G000426\n-G000427\n-G000431\n-G000444\n-G000447\n-G000466\n-G000468\n-G000475\n-G000483\n-G000490\n-G000493\n-G000497\n-G000498\n-G000514\n-G000517\n-G000524\n-G000526\n-G000530\n-G000534\n-G000540\n-G000547\n-G000569\n-G000570\n-G000581\n-G000584\n-G000592\n-G000605\n-G000612\n-G000620\n-G000628\n-G000629\n-G000631\n-G000635\n-G000637\n-G000646\n-G000655\n-G000660\n-G000663\n-G000665\n-G000668\n-G000669\n-G000696\n-G000701\n-G000704\n-G000705\n-G000706\n-G000709\n-G000711\n-G000714\n-G000715\n-G000716\n-G000717\n-G000720\n-G000721\n-G000722\n-G000725\n-G000726\n-G000728\n-G000730\n-G000737\n-G000748\n-G000749\n-G000751\n-G000754\n-G000759\n-G000772\n-G000783\n-G000788\n-G000790\n-G000805\n-G000810\n-G000824\n-G000827\n-G000832\n-G000834\n-G000845\n-G000851\n-G000857\n-G000872\n-G000879\n-G000881\n-G000890\n-G000894\n-G000896\n-G000899\n-G000902\n-G000904\n-G000909\n-G000927\n-G000929\n-G000931\n-G000934\n-G000944\n-G000951\n-G000962\n-G000966\n-G000976\n-G000982\n-G000984\n-G000985\n-G000987\n-G000988\n-G001001\n-G001006\n-G001007\n-G001015\n-G001022\n-G001026\n-G001029\n-G001032\n-G001043\n-G001045\n-G001049\n-G001051\n-G001052\n-G001053\n-G001061\n-G001073\n-G001080\n-G001083\n-G001090\n-G001093\n-G001102\n-G001105\n-G001107\n-G001108\n-G001110\n-G001112\n-G001115\n-G001116\n-G001119\n-G001121\n-G001123\n-G001136\n-G001146\n-G001155\n-G001160\n-G001169\n-G001171\n-G001179\n-G001184\n-G001189\n-G001193\n-G001197\n-G001201\n-G001204\n-G001210\n-G001218\n-G001219\n-G001226\n-G001227\n-G001232\n-G001241\n-G001244\n-G001247\n-G001271\n-G001278\n-G001279\n-G001281\n-G001283\n-G001287\n-G001288\n-G001289\n-G001296\n-G001298\n-G001306\n-G001317\n-G001319\n-G001324\n-G001325\n-G001328\n-G001333\n-G001343\n-G001344\n-G001351\n-G001352\n-G001353\n-G001355\n-G001359\n-G001360\n-G001362\n-G001369\n-G001374\n-G001379\n-G001385\n-G001386\n-G001393\n-G001394\n-G001409\n-G001424\n-G001431\n-G001433\n-G001434\n-G001436\n-G001457\n-G001461\n-G001465\n-G001467\n-G001469\n-G001474\n-G001478\n-G001483\n-G001485\n-G001495\n-G001507\n-G001517\n-G001525\n-G001534\n-G001536\n-G001539\n-G001542\n-G001547\n-G001550\n-G001554\n-G001559\n-G001560\n-G001563\n-G001565\n-G001567\n-G001575\n-G001578\n-G001579\n-G001597\n-G001598\n-G001604\n-G001605\n-G001606\n-G001609\n-G001620\n-G001623\n-G001626\n-G001628\n-G001629\n-G001630\n-G001633\n-G001634\n-G001635\n-G001640\n-G001644\n-G001645\n-G001646\n-G001647\n-G001649\n-G001650\n-G001651\n-G001665\n-G001668\n-G001687\n-G001694\n-G001696\n-G001697\n-G001703\n-G001704\n-G001707\n-G001711\n-G001724\n-G001725\n-G001726\n-G001729\n-G001732\n-G001736\n-G001737\n-G001746\n-G001748\n-G001749\n-G001751\n-G001753\n-G001756\n-G001760\n-G001761\n-G001765\n-G001766\n-G001771\n-G001772\n-G001776\n-G001779\n-G001780\n-G001785\n-G001791\n-G001794\n-G001802\n-G001809\n-G001810\n-G001812\n-G001819\n-G001820\n-G001825\n-G001831\n-G001836\n-G001840\n-G001854\n-G001874\n-G001877\n-G001878\n-G001880\n-G001883\n-G001888\n-G001889\n-G001890\n-G001891\n-G001893\n-G001895\n-G001897\n-G001899\n-G001901\n-G001904\n-G001906\n-G001910\n-G001926\n-G001929\n-G001934\n-G001937\n-G001940\n-G001944\n-G001949\n-G001951\n-G001952\n-G001960\n-G001968\n-G001970\n-G001972\n-G001975\n-G001976\n-G001978\n-G001983\n-G001985\n-G001987\n-G001991\n-G001993\n-G001994\n-G001995\n-G001997\n-G001998\n-G002001\n-G002007\n-G002011\n-G002024\n-G002032\n-G002038\n-G002040\n-G002044\n-G002048\n-G002050\n-G002051\n-G002053\n-G002054\n-G002055\n-G002056\n-G002061\n-G002077\n-G002085\n-G002093\n-G002096\n-G002097\n-G002101\n-G002104\n-G002107\n-G002120\n-G002131\n-G002146\n-G002153\n-G002180\n-G'..b'77\n-G003078\n-G003080\n-G003082\n-G003089\n-G003093\n-G003094\n-G003099\n-G003110\n-G003113\n-G003116\n-G003125\n-G003138\n-G003139\n-G003142\n-G003143\n-G003153\n-G003154\n-G003160\n-G003163\n-G003173\n-G003177\n-G003179\n-G003183\n-G003199\n-G003201\n-G003208\n-G003218\n-G003219\n-G003220\n-G003222\n-G003227\n-G003229\n-G003230\n-G003232\n-G003233\n-G003238\n-G003240\n-G003261\n-G003269\n-G003281\n-G003282\n-G003286\n-G003296\n-G003302\n-G003304\n-G003305\n-G003306\n-G003308\n-G003315\n-G003317\n-G003322\n-G003337\n-G003340\n-G003342\n-G003359\n-G003362\n-G003366\n-G003368\n-G003375\n-G003381\n-G003388\n-G003390\n-G003403\n-G003411\n-G003424\n-G003446\n-G003464\n-G003474\n-G003480\n-G003486\n-G003500\n-G003502\n-G003503\n-G003511\n-G003522\n-G003538\n-G003539\n-G003542\n-G003543\n-G003544\n-G003550\n-G003558\n-G003570\n-G003576\n-G003579\n-G003588\n-G003589\n-G003592\n-G003593\n-G003594\n-G003596\n-G003601\n-G003602\n-G003611\n-G003612\n-G003619\n-G003625\n-G003628\n-G003634\n-G003637\n-G003643\n-G003645\n-G003648\n-G003649\n-G003661\n-G003670\n-G003678\n-G003688\n-G003695\n-G003699\n-G003701\n-G003709\n-G003729\n-G003733\n-G003746\n-G003747\n-G003758\n-G003760\n-G003766\n-G003770\n-G003776\n-G003784\n-G003791\n-G003794\n-G003800\n-G003808\n-G003818\n-G003823\n-G003828\n-G003836\n-G003838\n-G003843\n-G003847\n-G003850\n-G003865\n-G003881\n-G003892\n-G003898\n-G003901\n-G003902\n-G003903\n-G003905\n-G003906\n-G003912\n-G003915\n-G003919\n-G003928\n-G003931\n-G003936\n-G003938\n-G003948\n-G003949\n-G003953\n-G003956\n-G003962\n-G003964\n-G003971\n-G003972\n-G003980\n-G003997\n-G004004\n-G004007\n-G004009\n-G004011\n-G004014\n-G004021\n-G004022\n-G004034\n-G004037\n-G004040\n-G004044\n-G004051\n-G004059\n-G004061\n-G004064\n-G004082\n-G004086\n-G004088\n-G004095\n-G004096\n-G004099\n-G004104\n-G004108\n-G004113\n-G004115\n-G004118\n-G004119\n-G004120\n-G004121\n-G004123\n-G004131\n-G004136\n-G004137\n-G004144\n-G004151\n-G004160\n-G004161\n-G004170\n-G004173\n-G004187\n-G004191\n-G004192\n-G004203\n-G004206\n-G004210\n-G004213\n-G004220\n-G004237\n-G004239\n-G004241\n-G004243\n-G004245\n-G004258\n-G004260\n-G004262\n-G004273\n-G004276\n-G004290\n-G004299\n-G004302\n-G004307\n-G004321\n-G004324\n-G004325\n-G004328\n-G004329\n-G004330\n-G004331\n-G004332\n-G004334\n-G004346\n-G004349\n-G004350\n-G004351\n-G004353\n-G004365\n-G004373\n-G004377\n-G004389\n-G004391\n-G004392\n-G004394\n-G004398\n-G004404\n-G004410\n-G004411\n-G004420\n-G004421\n-G004424\n-G004428\n-G004431\n-G004435\n-G004438\n-G004439\n-G004445\n-G004455\n-G004458\n-G004462\n-G004466\n-G004467\n-G004468\n-G004469\n-G004470\n-G004471\n-G004473\n-G004475\n-G004477\n-G004478\n-G004479\n-G004481\n-G004484\n-G004485\n-G004487\n-G004491\n-G004492\n-G004501\n-G004520\n-G004532\n-G004535\n-G004537\n-G004539\n-G004543\n-G004545\n-G004547\n-G004551\n-G004554\n-G004556\n-G004558\n-G004565\n-G004568\n-G004577\n-G004578\n-G004580\n-G004589\n-G004593\n-G004604\n-G004610\n-G004612\n-G004618\n-G004623\n-G004625\n-G004635\n-G004643\n-G004648\n-G004649\n-G004657\n-G004671\n-G004679\n-G004693\n-G004695\n-G004697\n-G004698\n-G004699\n-G004703\n-G004704\n-G004712\n-G004713\n-G004714\n-G004715\n-G004718\n-G004729\n-G004730\n-G004733\n-G004735\n-G004740\n-G004743\n-G004745\n-G004749\n-G004753\n-G004755\n-G004762\n-G004768\n-G004772\n-G004783\n-G004784\n-G004789\n-G004793\n-G004795\n-G004814\n-G004829\n-G004832\n-G004850\n-G004855\n-G004856\n-G004860\n-G004863\n-G004867\n-G004874\n-G004883\n-G004885\n-G004887\n-G004892\n-G004895\n-G004907\n-G004922\n-G004925\n-G004932\n-G004934\n-G004944\n-G004947\n-G004967\n-G004972\n-G004980\n-G004982\n-G004988\n-G004989\n-G004992\n-G004999\n-G005001\n-G005002\n-G005014\n-G005019\n-G005021\n-G005023\n-G005024\n-G005031\n-G005033\n-G005043\n-G005044\n-G005050\n-G005053\n-G005055\n-G005073\n-G005089\n-G005091\n-G005094\n-G005095\n-G005105\n-G005114\n-G005118\n-G005119\n-G005121\n-G005126\n-G005131\n-G005138\n-G005142\n-G005148\n-G005149\n-G005154\n-G005159\n-G005167\n-G005169\n-G005172\n-G005173\n-G005175\n-G005176\n-G005178\n-G005182\n-G005184\n-G005185\n-G005188\n-G005192\n-G005196\n-G005198\n-G005199\n-G005200\n-G005201\n-G005202\n-G005203\n-G005204\n-G005212\n-G005214\n-G005220\n-G005222\n-G005227\n-G005231\n-G005234\n-G005237\n-G005241\n-G005243\n-G005248\n-G005250\n-G005254\n-G005255\n-G005259\n-G005263\n-G005264\n-G005265\n-G005266\n-G005268\n-G005269\n-G005273\n-G005274\n-G005276\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/ID_Converter_FKW_Lacombe_et_al_2017_OK.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ID_Converter_FKW_Lacombe_et_al_2017_OK.txt Fri Feb 16 03:37:16 2018 -0500 |
| b |
| b'@@ -0,0 +1,152 @@\n+Protein accession number (UniProt)\tProtein name\tNumber of peptides (razor + unique)\tneXtProt_ID\tUniProt.ID\tGeneID\tMIM\tEnsembl\n+P15924\tDesmoplakin\t69\tNX_P15924\tDESP_HUMAN\t1832\t125647; 605676; 607450; 607655; 609638; 612908; 615821\tENSG00000096696\n+P02538\tKeratin, type II cytoskeletal 6A\t53\tNX_P02538\tK2C6A_HUMAN\t3853\t148041; 615726\tENSG00000205420\n+P02768\tSerum albumin\t44\tNX_P02768\tALBU_HUMAN\t213\t103600; 615999; 616000\tENSG00000163631\n+P08779\tKeratin, type I cytoskeletal 16\t29\tNX_P08779\tK1C16_HUMAN\t3868\t148067; 167200; 613000\tENSG00000186832\n+Q02413\tDesmoglein-1\t24\tNX_Q02413\tDSG1_HUMAN\t1828\t125670; 148700; 615508\tENSG00000134760\n+P07355\tAnnexin A2;Putative annexin A2-like protein\t22\tNX_P07355\tANXA2_HUMAN\t302\t151740\tENSG00000182718\n+P14923\tJunction plakoglobin\t22\tNX_P14923\tPLAK_HUMAN\t3728\t173325; 601214; 611528\tENSG00000173801\n+P02788\tLactotransferrin\t21\tNX_P02788\tTRFL_HUMAN\t4057\t150210\tENSG00000012223\n+Q9HC84\tMucin-5B\t21\tNX_Q9HC84\tMUC5B_HUMAN\t727897\t178500; 600770\tENSG00000117983\n+P29508\tSerpin B3\t20\tNX_P29508\tSPB3_HUMAN\t6317\t600517\tENSG00000057149\n+P63261\tActin, cytoplasmic 2\t19\tNX_P63261\tACTG_HUMAN\t71\t102560; 604717; 614583\tENSG00000184009\n+Q8N1N4\tKeratin, type II cytoskeletal 78\t18\tNX_Q8N1N4\tK2C78_HUMAN\t196374\t611159\tENSG00000170423\n+Q04695\tKeratin, type I cytoskeletal 17\t18\tNX_Q04695\tK1C17_HUMAN\t3872\t148069; 167210; 184500\tENSG00000128422\n+P01876\tIg alpha-1 chain C region\t16\tNX_P01876\tIGHA1_HUMAN\tNA\t146900\tENSG00000211895; ENSG00000282633\n+Q01469\tFatty acid-binding protein 5, epidermal\t15\tNX_Q01469\tFABP5_HUMAN\t2171\t605168\tENSG00000164687\n+P31944\tCaspase-14\t15\tNX_P31944\tCASPE_HUMAN\t23581\t605848; 617320\tENSG00000105141\n+P01833\tPolymeric immunoglobulin receptor\t15\tNX_P01833\tPIGR_HUMAN\t5284\t173880\tENSG00000162896\n+P06733\tAlpha-enolase\t15\tNX_P06733\tENOA_HUMAN\t2023\t172430\tENSG00000074800\n+P25311\tZinc-alpha-2-glycoprotein\t15\tNX_P25311\tZA2G_HUMAN\t563\t194460\tENSG00000160862\n+Q15149\tPlectin\t15\tNX_Q15149\tPLEC_HUMAN\t5339\t131950; 226670; 601282; 612138; 613723; 616487\tENSG00000178209\n+P19013\tKeratin, type II cytoskeletal 4\t13\tNX_P19013\tK2C4_HUMAN\tNA\t123940; 193900\tENSG00000170477\n+Q6KB66\tKeratin, type II cytoskeletal 80\t13\tNX_Q6KB66\tK2C80_HUMAN\t144501\t611161\tENSG00000167767\n+Q08188\tProtein-glutamine gamma-glutamyltransferase E\t12\tNX_Q08188\tTGM3_HUMAN\t7053\t600238; 617251\tENSG00000125780\n+P13646\tKeratin, type I cytoskeletal 13\t11\tNX_P13646\tK1C13_HUMAN\t3860\t148065; 615785\tENSG00000171401\n+Q86YZ3\tHornerin\t11\tNX_Q86YZ3\tHORN_HUMAN\t388697\t616293\tENSG00000197915\n+P04259\tKeratin, type II cytoskeletal 6B\t10\tNX_P04259\tK2C6B_HUMAN\t3854\t148042; 615728\tENSG00000185479\n+P02545\tPrelamin-A/C;Lamin-A/C\t10\tNX_P02545\tLMNA_HUMAN\t4000\t115200; 150330; 151660; 159001; 176670; 181350; 212112; 248370; 275210; 605588; 610140; 613205; 616516\tENSG00000160789\n+P04083\tAnnexin A1\t10\tNX_P04083\tANXA1_HUMAN\t301\t151690\tENSG00000135046\n+P11021\t78 kDa glucose-regulated protein\t10\tNX_P11021\tGRP78_HUMAN\t3309\t138120\tENSG00000044574\n+P02787\tSerotransferrin\t9\tNX_P02787\tTRFE_HUMAN\t7018\t190000; 209300\tENSG00000091513\n+P04040\tCatalase\t9\tNX_P04040\tCATA_HUMAN\t847\t115500; 614097\tENSG00000121691\n+P31151\tProtein S100-A7\t9\tNX_P31151\tS10A7_HUMAN\t6278\t600353\tENSG00000143556\n+P31947\t14-3-3 protein sigma\t9\tNX_P31947\t1433S_HUMAN\t2810\t601290\tENSG00000175793\n+Q96P63\tSerpin B12\t9\tNX_Q96P63\tSPB12_HUMAN\t89777\t615662\tENSG00000166634\n+P14618\tPyruvate kinase PKM\t9\tNX_P14618\tKPYM_HUMAN\t5315\t179050\tENSG00000067225\n+P60174\tTriosephosphate isomerase\t9\tNX_P60174\tTPIS_HUMAN\t7167\t190450; 615512\tENSG00000111669\n+Q06830\tPeroxiredoxin-1\t9\tNX_Q06830\tPRDX1_HUMAN\t5052\t176763\tENSG00000117450\n+P01040\tCystatin-A\t8\tNX_P01040\tCYTA_HUMAN\t1475\t184600; 607936\tENSG00000121552\n+P05089\tArginase-1\t8\tNX_P05089\tARGI1_HUMAN\t383\t207800; 608313\tENSG00000118520\n+P01834\tIg kappa chain C region\t8\tNX_P01834\tIGKC_HUMAN\tNA\t147200; 614102\tNA\n+P04406\tGlyceraldehyde-3-phosphate dehydrogenase\t8\tNX_P04406\tG3P_HUMAN\t2597\t138400\tENSG00000111640\n+P0DMV9\tHeat shock 70 kDa protein 1B\t8\tNX_P0DMV9\tHS71B_HUMAN\t3303; 3304\t140550; '..b'X_P36952\tSPB5_HUMAN\t5268\t154790\tENSG00000206075\n+P40926\tMalate dehydrogenase, mitochondrial\t3\tNX_P40926\tMDHM_HUMAN\t4191\t154100; 617339\tENSG00000146701\n+Q9Y6R7\tIgGFc-binding protein\t3\tNX_Q9Y6R7\tFCGBP_HUMAN\t8857\t617553\tENSG00000281123\n+O95274\tLy6/PLAUR domain-containing protein 3\t2\tNX_O95274\tLYPD3_HUMAN\t27076\t609484\tENSG00000124466\n+P00491\tPurine nucleoside phosphorylase\t2\tNX_P00491\tPNPH_HUMAN\t4860\t164050; 613179\tENSG00000198805\n+P04080\tCystatin-B\t2\tNX_P04080\tCYTB_HUMAN\t1476\t254800; 601145\tENSG00000160213\n+P09972\tFructose-bisphosphate aldolase C\t2\tNX_P09972\tALDOC_HUMAN\t230\t103870\tENSG00000109107\n+P19012\tKeratin, type I cytoskeletal 15\t2\tNX_P19012\tK1C15_HUMAN\t3866\t148030\tENSG00000171346\n+P20930\tFilaggrin\t2\tNX_P20930\tFILA_HUMAN\t2312\t135940; 146700; 605803\tENSG00000143631\n+Q96FX8\tp53 apoptosis effector related to PMP-22\t2\tNX_Q96FX8\tPERP_HUMAN\t64065\t609301\tENSG00000112378\n+Q9UIV8\tSerpin B13\t2\tNX_Q9UIV8\tSPB13_HUMAN\t5275\t604445\tENSG00000197641\n+P01625\tIg kappa chain V-IV region Len\t2\tNA\tNA\tNA\tNA\tNA\n+P01765\tIg heavy chain V-III region TIL\t2\tNA\tNA\tNA\tNA\tNA\n+P01766\tIg heavy chain V-III region BRO\t2\tNX_P01766\tHV313_HUMAN\tNA\tNA\tENSG00000211942; ENSG00000282286\n+P01860\tIg gamma-3 chain C region\t2\tNX_P01860\tIGHG3_HUMAN\tNA\t147120\tNA\n+P01871\tIg mu chain C region\t2\tNX_P01871\tIGHM_HUMAN\tNA\t147020; 601495\tENSG00000211899; ENSG00000282657\n+P05090\tApolipoprotein D\t2\tNX_P05090\tAPOD_HUMAN\t347\t107740\tENSG00000189058\n+P06870\tKallikrein-1\t2\tNX_P06870\tKLK1_HUMAN\t3816\t147910; 615953\tENSG00000167748\n+P07858\tCathepsin B\t2\tNX_P07858\tCATB_HUMAN\t1508\t116810\tENSG00000164733\n+P08865\t40S ribosomal protein SA\t2\tNX_P08865\tRSSA_HUMAN\t3921\t150370; 271400\tENSG00000168028\n+P11279\tLysosome-associated membrane glycoprotein 1\t2\tNX_P11279\tLAMP1_HUMAN\t3916\t153330\tENSG00000185896\n+P13473\tLysosome-associated membrane glycoprotein 2\t2\tNX_P13473\tLAMP2_HUMAN\t3920\t300257; 309060\tENSG00000005893\n+P19971\tThymidine phosphorylase\t2\tNX_P19971\tTYPH_HUMAN\t1890\t131222; 603041\tENSG00000025708\n+P23284\tPeptidyl-prolyl cis-trans isomerase B\t2\tNX_P23284\tPPIB_HUMAN\t5479\t123841; 259440\tENSG00000166794\n+P23396\t40S ribosomal protein S3\t2\tNX_P23396\tRS3_HUMAN\t6188\t600454\tENSG00000149273\n+P25705\tATP synthase subunit alpha, mitochondrial\t2\tNX_P25705\tATPA_HUMAN\t498\t164360; 615228; 616045\tENSG00000152234\n+P27482\tCalmodulin-like protein 3\t2\tNX_P27482\tCALL3_HUMAN\t810\t114184\tENSG00000178363\n+P31949\tProtein S100-A11\t2\tNX_P31949\tS10AB_HUMAN\t6282\t603114\tENSG00000163191\n+P40121\tMacrophage-capping protein\t2\tNX_P40121\tCAPG_HUMAN\t822\t153615\tENSG00000042493\n+P42357\tHistidine ammonia-lyase\t2\tNX_P42357\tHUTH_HUMAN\t3034\t235800; 609457\tENSG00000084110\n+P47756\tF-actin-capping protein subunit beta\t2\tNX_P47756\tCAPZB_HUMAN\t832\t601572\tENSG00000077549\n+P48637\tGlutathione synthetase\t2\tNX_P48637\tGSHB_HUMAN\t2937\t231900; 266130; 601002\tENSG00000100983\n+P49720\tProteasome subunit beta type-3\t2\tNX_P49720\tPSB3_HUMAN\t5691\t602176\tENSG00000277791; ENSG00000275903\n+P50395\tRab GDP dissociation inhibitor beta\t2\tNX_P50395\tGDIB_HUMAN\t2665\t600767\tENSG00000057608\n+P59998\tActin-related protein 2/3 complex subunit 4\t2\tNX_P59998\tARPC4_HUMAN\t10093\t604226\tENSG00000241553\n+P61160\tActin-related protein 2\t2\tNX_P61160\tARP2_HUMAN\t10097\t604221\tENSG00000138071\n+P61916\tEpididymal secretory protein E1\t2\tNX_P61916\tNPC2_HUMAN\t10577\t601015; 607625\tENSG00000119655\n+P04745\tAlpha-amylase 1\t23\tNX_P04745\tAMY1_HUMAN\t276; 277; 278\t104700; 104701; 104702\tENSG00000174876; ENSG00000187733; ENSG00000237763\n+Q9NZT1\tCalmodulin-like protein 5\t8\tNX_Q9NZT1\tCALL5_HUMAN\t51806\t605183\tENSG00000178372\n+P12273\tProlactin-inducible protein\t6\tNX_P12273\tPIP_HUMAN\t5304\t176720\tENSG00000159763\n+Q96DA0\tZymogen granule protein 16 homolog B\t5\tNX_Q96DA0\tZG16B_HUMAN\t124220\tNA\tENSG00000162078; ENSG00000283056\n+P01036\tCystatin-S\t5\tNX_P01036\tCYTS_HUMAN\t1472\t123857\tENSG00000101441\n+Q8TAX7\tMucin-7\t2\tNX_Q8TAX7\tMUC7_HUMAN\t4589\t158375; 600807\tENSG00000171195\n+P01037\tCystatin-SN\t2\tNX_P01037\tCYTN_HUMAN\t1469\t123855\tENSG00000170373\n+P09228\tCystatin-SA\t2\tNX_P09228\tCYTT_HUMAN\t1470\t123856\tENSG00000170369\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/Mucilli.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Mucilli.txt Fri Feb 16 03:37:16 2018 -0500 |
| b |
| @@ -0,0 +1,167 @@ +P04264 +P35908 +P35527 +P04259 +P13647 +P08779 +P02533 +Q04695 +P01040 +P13645 +P59665 +Q01469 +Q9NZT1 +P22531 +P04792 +P01834 +Q96KK5 +Q06830 +P60709 +P13646 +P31949 +P06702 +P14923 +Q13835 +P60174 +P07737 +P62805 +P31947 +P10599 +P15924 +Q6UWP8 +P02768 +Q6KB66 +P12035 +P47929 +P04406 +P17931 +Q3ZCW2 +P63167 +P63104 +P0CG48 +Q5XKE5 +P11142 +P06733 +Q7Z794 +P01593 +Q9NZH8 +P14174 +P01620 +P36952 +P68104 +O60814 +Q8N1N4 +P00338 +Q02413 +P07355 +P52907 +Q6ZVX7 +P08865 +P09211 +Q96P63 +P68371 +P30041 +P27482 +P08107 +P22392 +P29508 +P01861 +Q08188 +Q9C075 +P14618 +P31025 +P02679 +P54652 +Q13748 +P01857 +P80188 +P35321 +P02675 +P19013 +Q14CN4 +P37802 +P05783 +P51149 +P01876 +P28072 +Q86YZ3 +Q5T749 +P28070 +P05109 +P02671 +P58107 +Q5T750 +P04040 +P00558 +P62244 +P03973 +Q6E0U4 +P47756 +P13639 +P68431 +P32119 +Q8WVV4 +Q96QA5 +P68871 +Q9Y337 +P11021 +P01871 +P61626 +P25311 +P22735 +P30050 +P06576 +O43175 +O43790 +P37837 +P04083 +P04075 +P02545 +P50990 +O43707 +Q5D862 +P17900 +O75223 +Q14134 +Q08554 +P60842 +P00738 +P07476 +P05120 +P28074 +O15523 +P25787 +P13489 +P05091 +P31944 +P23490 +P05090 +P06396 +P49862 +P18206 +P15880 +P05089 +P40925 +P40926 +P20933 +Q9UIV8 +Q5VVQ6 +P07900 +P02788 +Q9Y3R4 +P23526 +P07339 +Q15517 +Q8IW75 +P49189 +P01023 +P26641 +P61978 +P10809 +P29401 +O75369 +Q15365 +P29373 +P14735 +Q14210 +Q9Y277 |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/RPKM.txt --- a/test-data/RPKM.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,417 +0,0 @@ -G000005 -G000008 -G000009 -G000012 -G000028 -G000029 -G000030 -G000061 -G000101 -G000147 -G000165 -G000177 -G000185 -G000195 -G000237 -G000259 -G000262 -G000302 -G000305 -G000306 -G000311 -G000316 -G000355 -G000356 -G000370 -G000376 -G000377 -G000381 -G000412 -G000418 -G000420 -G000426 -G000447 -G000490 -G000514 -G000517 -G000547 -G000581 -G000665 -G000696 -G000701 -G000704 -G000705 -G000711 -G000714 -G000715 -G000717 -G000720 -G000721 -G000722 -G000725 -G000726 -G000728 -G000749 -G000783 -G000824 -G000851 -G000857 -G000899 -G000902 -G000934 -G000951 -G000962 -G000966 -G000984 -G000985 -G000987 -G001006 -G001007 -G001029 -G001043 -G001045 -G001051 -G001053 -G001061 -G001093 -G001102 -G001105 -G001107 -G001112 -G001115 -G001123 -G001136 -G001171 -G001189 -G001218 -G001226 -G001247 -G001283 -G001287 -G001288 -G001317 -G001319 -G001328 -G001343 -G001351 -G001352 -G001359 -G001360 -G001362 -G001386 -G001409 -G001431 -G001461 -G001467 -G001507 -G001525 -G001539 -G001547 -G001554 -G001560 -G001565 -G001575 -G001598 -G001605 -G001620 -G001623 -G001630 -G001633 -G001640 -G001649 -G001650 -G001651 -G001703 -G001704 -G001725 -G001729 -G001736 -G001748 -G001751 -G001753 -G001760 -G001765 -G001771 -G001772 -G001780 -G001791 -G001819 -G001820 -G001840 -G001880 -G001889 -G001890 -G001891 -G001899 -G001904 -G001926 -G001951 -G001975 -G001976 -G001983 -G001987 -G001993 -G001995 -G001998 -G002001 -G002011 -G002024 -G002044 -G002048 -G002050 -G002053 -G002054 -G002055 -G002077 -G002097 -G002101 -G002153 -G002180 -G002199 -G002202 -G002231 -G002254 -G002267 -G002282 -G002297 -G002309 -G002331 -G002332 -G002333 -G002346 -G002361 -G002368 -G002369 -G002373 -G002383 -G002384 -G002385 -G002416 -G002453 -G002462 -G002475 -G002488 -G002497 -G002518 -G002533 -G002551 -G002566 -G002569 -G002594 -G002595 -G002601 -G002610 -G002616 -G002626 -G002628 -G002641 -G002648 -G002658 -G002682 -G002691 -G002693 -G002702 -G002709 -G002710 -G002711 -G002722 -G002755 -G002779 -G002784 -G002797 -G002833 -G002834 -G002885 -G002894 -G002896 -G002899 -G002902 -G002928 -G002953 -G002967 -G002968 -G002969 -G002972 -G002975 -G002981 -G002992 -G002998 -G003023 -G003041 -G003059 -G003075 -G003080 -G003082 -G003093 -G003113 -G003125 -G003142 -G003154 -G003173 -G003177 -G003208 -G003220 -G003222 -G003229 -G003230 -G003304 -G003305 -G003315 -G003317 -G003322 -G003366 -G003388 -G003403 -G003464 -G003486 -G003502 -G003511 -G003539 -G003543 -G003550 -G003558 -G003579 -G003589 -G003592 -G003593 -G003594 -G003602 -G003611 -G003619 -G003628 -G003634 -G003645 -G003747 -G003828 -G003843 -G003847 -G003865 -G003881 -G003901 -G003902 -G003905 -G003912 -G003919 -G003948 -G003962 -G003964 -G004004 -G004034 -G004051 -G004064 -G004095 -G004096 -G004099 -G004113 -G004119 -G004131 -G004136 -G004160 -G004161 -G004170 -G004187 -G004192 -G004210 -G004239 -G004241 -G004258 -G004260 -G004273 -G004293 -G004299 -G004307 -G004324 -G004329 -G004330 -G004349 -G004351 -G004353 -G004373 -G004391 -G004428 -G004466 -G004468 -G004469 -G004471 -G004475 -G004477 -G004479 -G004487 -G004532 -G004543 -G004545 -G004558 -G004565 -G004577 -G004578 -G004589 -G004612 -G004618 -G004623 -G004649 -G004671 -G004712 -G004713 -G004714 -G004715 -G004718 -G004735 -G004762 -G004768 -G004772 -G004783 -G004789 -G004793 -G004856 -G004887 -G004895 -G004907 -G004922 -G004925 -G004932 -G004934 -G004967 -G004992 -G005019 -G005024 -G005043 -G005055 -G005089 -G005094 -G005095 -G005105 -G005119 -G005126 -G005131 -G005154 -G005159 -G005167 -G005169 -G005175 -G005176 -G005180 -G005185 -G005188 -G005192 -G005198 -G005201 -G005202 -G005203 -G005212 -G005214 -G005222 -G005241 -G005243 -G005246 -G005248 -G005250 -G005254 -G005255 -G005259 -G005263 -G005264 -G005266 -G005268 -G005269 -G005273 -G005276 |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/TC.txt --- a/test-data/TC.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,548 +0,0 @@ -G000005 -G000008 -G000009 -G000012 -G000026 -G000028 -G000029 -G000030 -G000061 -G000082 -G000101 -G000147 -G000165 -G000167 -G000177 -G000185 -G000195 -G000236 -G000237 -G000256 -G000259 -G000262 -G000276 -G000302 -G000305 -G000306 -G000311 -G000316 -G000318 -G000355 -G000356 -G000365 -G000376 -G000377 -G000381 -G000391 -G000412 -G000418 -G000420 -G000426 -G000431 -G000447 -G000490 -G000493 -G000514 -G000517 -G000547 -G000581 -G000605 -G000663 -G000665 -G000669 -G000696 -G000701 -G000704 -G000705 -G000706 -G000711 -G000714 -G000715 -G000716 -G000717 -G000720 -G000721 -G000725 -G000726 -G000728 -G000749 -G000751 -G000783 -G000805 -G000832 -G000851 -G000857 -G000899 -G000902 -G000931 -G000934 -G000951 -G000962 -G000966 -G000984 -G000985 -G000987 -G001006 -G001007 -G001026 -G001043 -G001045 -G001051 -G001052 -G001053 -G001061 -G001093 -G001102 -G001105 -G001107 -G001112 -G001115 -G001123 -G001136 -G001160 -G001171 -G001184 -G001189 -G001193 -G001197 -G001218 -G001219 -G001226 -G001247 -G001283 -G001285 -G001287 -G001288 -G001317 -G001319 -G001328 -G001333 -G001343 -G001351 -G001352 -G001359 -G001360 -G001362 -G001386 -G001409 -G001431 -G001461 -G001467 -G001469 -G001483 -G001507 -G001534 -G001539 -G001547 -G001550 -G001554 -G001560 -G001565 -G001567 -G001575 -G001598 -G001605 -G001609 -G001620 -G001623 -G001629 -G001630 -G001633 -G001634 -G001635 -G001640 -G001647 -G001649 -G001650 -G001651 -G001703 -G001704 -G001724 -G001725 -G001729 -G001732 -G001736 -G001737 -G001748 -G001751 -G001753 -G001760 -G001765 -G001771 -G001772 -G001780 -G001785 -G001791 -G001794 -G001819 -G001820 -G001831 -G001840 -G001874 -G001880 -G001883 -G001888 -G001889 -G001890 -G001891 -G001899 -G001901 -G001904 -G001926 -G001934 -G001951 -G001975 -G001976 -G001983 -G001985 -G001987 -G001993 -G001995 -G001998 -G002001 -G002011 -G002024 -G002040 -G002044 -G002048 -G002050 -G002053 -G002054 -G002055 -G002056 -G002062 -G002077 -G002097 -G002101 -G002131 -G002153 -G002187 -G002191 -G002195 -G002199 -G002202 -G002206 -G002215 -G002224 -G002231 -G002234 -G002237 -G002254 -G002267 -G002282 -G002288 -G002297 -G002309 -G002310 -G002331 -G002332 -G002333 -G002336 -G002343 -G002346 -G002361 -G002362 -G002368 -G002369 -G002373 -G002383 -G002384 -G002385 -G002392 -G002416 -G002453 -G002462 -G002475 -G002488 -G002497 -G002510 -G002533 -G002551 -G002569 -G002582 -G002594 -G002595 -G002601 -G002610 -G002616 -G002626 -G002628 -G002641 -G002648 -G002658 -G002682 -G002690 -G002691 -G002693 -G002702 -G002709 -G002710 -G002711 -G002722 -G002750 -G002755 -G002767 -G002775 -G002779 -G002780 -G002784 -G002796 -G002797 -G002833 -G002834 -G002874 -G002880 -G002885 -G002886 -G002888 -G002893 -G002894 -G002895 -G002896 -G002899 -G002901 -G002902 -G002912 -G002922 -G002928 -G002953 -G002966 -G002967 -G002968 -G002969 -G002972 -G002975 -G002981 -G002992 -G002998 -G003014 -G003023 -G003041 -G003059 -G003075 -G003077 -G003078 -G003080 -G003089 -G003093 -G003113 -G003125 -G003142 -G003153 -G003154 -G003177 -G003208 -G003218 -G003219 -G003220 -G003222 -G003229 -G003230 -G003232 -G003240 -G003269 -G003304 -G003305 -G003315 -G003317 -G003322 -G003340 -G003359 -G003362 -G003366 -G003368 -G003388 -G003390 -G003403 -G003464 -G003486 -G003502 -G003511 -G003539 -G003543 -G003550 -G003558 -G003570 -G003576 -G003579 -G003589 -G003592 -G003593 -G003594 -G003596 -G003611 -G003619 -G003625 -G003628 -G003634 -G003645 -G003678 -G003699 -G003709 -G003729 -G003746 -G003747 -G003760 -G003794 -G003828 -G003838 -G003843 -G003847 -G003865 -G003881 -G003901 -G003902 -G003905 -G003912 -G003919 -G003936 -G003948 -G003962 -G003964 -G004004 -G004009 -G004034 -G004061 -G004064 -G004086 -G004095 -G004096 -G004099 -G004113 -G004118 -G004119 -G004131 -G004136 -G004151 -G004160 -G004161 -G004170 -G004187 -G004192 -G004206 -G004210 -G004213 -G004241 -G004258 -G004260 -G004262 -G004273 -G004276 -G004293 -G004299 -G004307 -G004324 -G004329 -G004330 -G004349 -G004350 -G004351 -G004353 -G004365 -G004373 -G004389 -G004394 -G004424 -G004428 -G004431 -G004438 -G004445 -G004466 -G004468 -G004469 -G004471 -G004473 -G004475 -G004477 -G004478 -G004479 -G004487 -G004492 -G004532 -G004537 -G004543 -G004554 -G004556 -G004558 -G004565 -G004577 -G004578 -G004589 -G004612 -G004618 -G004623 -G004649 -G004671 -G004693 -G004712 -G004713 -G004714 -G004715 -G004718 -G004733 -G004735 -G004749 -G004753 -G004762 -G004768 -G004772 -G004783 -G004793 -G004856 -G004863 -G004887 -G004895 -G004907 -G004922 -G004925 -G004932 -G004934 -G004967 -G004992 -G005019 -G005021 -G005023 -G005024 -G005043 -G005044 -G005050 -G005053 -G005055 -G005089 -G005094 -G005095 -G005105 -G005119 -G005126 -G005131 -G005138 -G005154 -G005159 -G005169 -G005175 -G005176 -G005180 -G005185 -G005188 -G005192 -G005198 -G005201 -G005202 -G005203 -G005212 -G005214 -G005222 -G005241 -G005243 -G005246 -G005248 -G005250 -G005254 -G005255 -G005263 -G005264 -G005266 -G005268 -G005269 -G005273 -G005276 |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/TMM.txt --- a/test-data/TMM.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1190 +0,0 @@\n-G000002\n-G000005\n-G000008\n-G000009\n-G000012\n-G000022\n-G000023\n-G000024\n-G000026\n-G000027\n-G000028\n-G000029\n-G000030\n-G000031\n-G000041\n-G000061\n-G000078\n-G000080\n-G000082\n-G000095\n-G000098\n-G000101\n-G000114\n-G000116\n-G000129\n-G000144\n-G000147\n-G000165\n-G000167\n-G000177\n-G000180\n-G000181\n-G000185\n-G000186\n-G000194\n-G000195\n-G000197\n-G000203\n-G000215\n-G000218\n-G000231\n-G000232\n-G000236\n-G000237\n-G000238\n-G000242\n-G000253\n-G000254\n-G000256\n-G000259\n-G000261\n-G000262\n-G000268\n-G000270\n-G000273\n-G000274\n-G000276\n-G000301\n-G000302\n-G000304\n-G000305\n-G000306\n-G000309\n-G000311\n-G000316\n-G000317\n-G000318\n-G000323\n-G000338\n-G000339\n-G000352\n-G000355\n-G000356\n-G000358\n-G000362\n-G000365\n-G000370\n-G000376\n-G000377\n-G000381\n-G000391\n-G000404\n-G000405\n-G000411\n-G000412\n-G000418\n-G000419\n-G000420\n-G000426\n-G000427\n-G000431\n-G000444\n-G000447\n-G000466\n-G000468\n-G000471\n-G000475\n-G000483\n-G000490\n-G000493\n-G000497\n-G000498\n-G000510\n-G000514\n-G000517\n-G000524\n-G000526\n-G000530\n-G000534\n-G000540\n-G000547\n-G000581\n-G000584\n-G000592\n-G000600\n-G000604\n-G000605\n-G000612\n-G000620\n-G000628\n-G000629\n-G000631\n-G000635\n-G000637\n-G000646\n-G000660\n-G000663\n-G000665\n-G000668\n-G000669\n-G000696\n-G000701\n-G000704\n-G000705\n-G000706\n-G000709\n-G000711\n-G000714\n-G000715\n-G000716\n-G000717\n-G000720\n-G000721\n-G000722\n-G000725\n-G000726\n-G000728\n-G000730\n-G000737\n-G000742\n-G000748\n-G000749\n-G000751\n-G000754\n-G000759\n-G000772\n-G000783\n-G000788\n-G000790\n-G000805\n-G000810\n-G000824\n-G000827\n-G000832\n-G000834\n-G000845\n-G000851\n-G000857\n-G000865\n-G000872\n-G000875\n-G000879\n-G000890\n-G000894\n-G000896\n-G000899\n-G000902\n-G000904\n-G000909\n-G000927\n-G000929\n-G000931\n-G000934\n-G000942\n-G000944\n-G000951\n-G000962\n-G000966\n-G000976\n-G000982\n-G000984\n-G000985\n-G000987\n-G000988\n-G000994\n-G001001\n-G001006\n-G001007\n-G001015\n-G001022\n-G001026\n-G001029\n-G001032\n-G001043\n-G001045\n-G001049\n-G001051\n-G001052\n-G001053\n-G001061\n-G001072\n-G001073\n-G001080\n-G001083\n-G001090\n-G001093\n-G001102\n-G001105\n-G001107\n-G001108\n-G001110\n-G001112\n-G001115\n-G001116\n-G001119\n-G001121\n-G001123\n-G001136\n-G001146\n-G001155\n-G001160\n-G001169\n-G001171\n-G001179\n-G001180\n-G001184\n-G001189\n-G001193\n-G001195\n-G001197\n-G001201\n-G001210\n-G001215\n-G001218\n-G001219\n-G001226\n-G001227\n-G001232\n-G001238\n-G001240\n-G001241\n-G001244\n-G001246\n-G001247\n-G001271\n-G001275\n-G001278\n-G001279\n-G001281\n-G001283\n-G001285\n-G001287\n-G001288\n-G001289\n-G001296\n-G001306\n-G001317\n-G001319\n-G001324\n-G001325\n-G001328\n-G001333\n-G001343\n-G001344\n-G001351\n-G001352\n-G001353\n-G001355\n-G001359\n-G001360\n-G001362\n-G001364\n-G001374\n-G001379\n-G001385\n-G001386\n-G001393\n-G001394\n-G001409\n-G001424\n-G001425\n-G001431\n-G001433\n-G001434\n-G001451\n-G001457\n-G001461\n-G001465\n-G001467\n-G001469\n-G001474\n-G001478\n-G001483\n-G001495\n-G001507\n-G001509\n-G001510\n-G001517\n-G001525\n-G001528\n-G001534\n-G001539\n-G001542\n-G001547\n-G001550\n-G001554\n-G001559\n-G001560\n-G001565\n-G001567\n-G001570\n-G001575\n-G001578\n-G001579\n-G001581\n-G001597\n-G001598\n-G001604\n-G001605\n-G001606\n-G001609\n-G001620\n-G001623\n-G001626\n-G001628\n-G001629\n-G001630\n-G001633\n-G001634\n-G001635\n-G001640\n-G001644\n-G001645\n-G001646\n-G001647\n-G001649\n-G001650\n-G001651\n-G001657\n-G001665\n-G001668\n-G001671\n-G001687\n-G001694\n-G001697\n-G001703\n-G001704\n-G001707\n-G001711\n-G001724\n-G001725\n-G001726\n-G001729\n-G001732\n-G001736\n-G001737\n-G001746\n-G001748\n-G001749\n-G001751\n-G001753\n-G001756\n-G001760\n-G001765\n-G001766\n-G001771\n-G001772\n-G001776\n-G001780\n-G001785\n-G001787\n-G001791\n-G001794\n-G001802\n-G001808\n-G001809\n-G001810\n-G001812\n-G001819\n-G001820\n-G001825\n-G001831\n-G001836\n-G001840\n-G001854\n-G001874\n-G001877\n-G001878\n-G001880\n-G001883\n-G001888\n-G001889\n-G001890\n-G001891\n-G001893\n-G001895\n-G001897\n-G001899\n-G001901\n-G001904\n-G001906\n-G001910\n-G001926\n-G001929\n-G001934\n-G001936\n-G001937\n-G001940\n-G001941\n-G001944\n-G001949\n-G001951\n-G001952\n-G001960\n-G001968\n-G001970\n-G001972\n-G001975\n-G001976\n-G001978\n-G001983\n-G001985\n-G001987\n-G001991\n-G001993\n-G001995\n-G001997\n-G001998\n-G002001\n-G002007\n-G002010\n-G002011\n-G'..b'02\n-G003304\n-G003305\n-G003306\n-G003308\n-G003315\n-G003317\n-G003318\n-G003322\n-G003326\n-G003337\n-G003340\n-G003342\n-G003344\n-G003359\n-G003362\n-G003366\n-G003368\n-G003375\n-G003381\n-G003388\n-G003390\n-G003397\n-G003403\n-G003411\n-G003427\n-G003440\n-G003441\n-G003446\n-G003464\n-G003474\n-G003480\n-G003486\n-G003500\n-G003502\n-G003503\n-G003511\n-G003522\n-G003538\n-G003539\n-G003542\n-G003543\n-G003550\n-G003558\n-G003570\n-G003576\n-G003579\n-G003588\n-G003589\n-G003592\n-G003593\n-G003594\n-G003596\n-G003601\n-G003602\n-G003611\n-G003612\n-G003619\n-G003625\n-G003628\n-G003634\n-G003637\n-G003643\n-G003645\n-G003648\n-G003649\n-G003661\n-G003670\n-G003678\n-G003695\n-G003699\n-G003701\n-G003709\n-G003729\n-G003733\n-G003746\n-G003747\n-G003751\n-G003760\n-G003766\n-G003770\n-G003776\n-G003784\n-G003791\n-G003792\n-G003794\n-G003800\n-G003808\n-G003818\n-G003823\n-G003828\n-G003836\n-G003838\n-G003843\n-G003847\n-G003850\n-G003865\n-G003876\n-G003881\n-G003891\n-G003892\n-G003898\n-G003901\n-G003902\n-G003903\n-G003904\n-G003905\n-G003906\n-G003912\n-G003915\n-G003919\n-G003922\n-G003928\n-G003929\n-G003931\n-G003936\n-G003938\n-G003943\n-G003948\n-G003949\n-G003953\n-G003956\n-G003962\n-G003964\n-G003971\n-G003972\n-G003980\n-G004004\n-G004007\n-G004009\n-G004011\n-G004014\n-G004021\n-G004022\n-G004026\n-G004034\n-G004040\n-G004044\n-G004051\n-G004059\n-G004061\n-G004064\n-G004081\n-G004082\n-G004086\n-G004087\n-G004088\n-G004089\n-G004095\n-G004096\n-G004099\n-G004104\n-G004108\n-G004113\n-G004118\n-G004119\n-G004120\n-G004123\n-G004131\n-G004136\n-G004137\n-G004144\n-G004151\n-G004160\n-G004161\n-G004170\n-G004177\n-G004184\n-G004187\n-G004191\n-G004192\n-G004199\n-G004203\n-G004206\n-G004210\n-G004213\n-G004214\n-G004220\n-G004222\n-G004237\n-G004238\n-G004239\n-G004241\n-G004243\n-G004245\n-G004249\n-G004258\n-G004260\n-G004262\n-G004273\n-G004276\n-G004278\n-G004290\n-G004293\n-G004299\n-G004302\n-G004307\n-G004324\n-G004325\n-G004328\n-G004329\n-G004330\n-G004331\n-G004332\n-G004333\n-G004334\n-G004346\n-G004349\n-G004350\n-G004351\n-G004353\n-G004355\n-G004356\n-G004365\n-G004367\n-G004373\n-G004377\n-G004384\n-G004389\n-G004391\n-G004392\n-G004394\n-G004398\n-G004404\n-G004407\n-G004410\n-G004411\n-G004421\n-G004424\n-G004428\n-G004431\n-G004435\n-G004438\n-G004439\n-G004445\n-G004455\n-G004458\n-G004462\n-G004466\n-G004467\n-G004468\n-G004469\n-G004470\n-G004471\n-G004473\n-G004475\n-G004477\n-G004478\n-G004479\n-G004481\n-G004484\n-G004485\n-G004487\n-G004491\n-G004492\n-G004499\n-G004501\n-G004520\n-G004532\n-G004535\n-G004537\n-G004539\n-G004542\n-G004543\n-G004545\n-G004547\n-G004551\n-G004554\n-G004556\n-G004558\n-G004559\n-G004561\n-G004565\n-G004568\n-G004577\n-G004578\n-G004589\n-G004593\n-G004604\n-G004610\n-G004612\n-G004618\n-G004623\n-G004625\n-G004635\n-G004636\n-G004643\n-G004648\n-G004649\n-G004657\n-G004667\n-G004671\n-G004682\n-G004693\n-G004695\n-G004697\n-G004698\n-G004699\n-G004700\n-G004704\n-G004712\n-G004713\n-G004714\n-G004715\n-G004718\n-G004726\n-G004729\n-G004730\n-G004733\n-G004735\n-G004740\n-G004743\n-G004745\n-G004749\n-G004753\n-G004755\n-G004762\n-G004768\n-G004772\n-G004783\n-G004784\n-G004786\n-G004789\n-G004793\n-G004795\n-G004814\n-G004826\n-G004829\n-G004832\n-G004850\n-G004855\n-G004856\n-G004860\n-G004863\n-G004867\n-G004874\n-G004883\n-G004885\n-G004887\n-G004888\n-G004892\n-G004895\n-G004907\n-G004908\n-G004922\n-G004925\n-G004930\n-G004932\n-G004934\n-G004944\n-G004947\n-G004957\n-G004967\n-G004972\n-G004980\n-G004982\n-G004988\n-G004989\n-G004992\n-G004994\n-G004999\n-G005001\n-G005002\n-G005019\n-G005021\n-G005023\n-G005024\n-G005029\n-G005033\n-G005041\n-G005043\n-G005044\n-G005050\n-G005053\n-G005055\n-G005073\n-G005074\n-G005089\n-G005091\n-G005094\n-G005095\n-G005105\n-G005114\n-G005118\n-G005119\n-G005121\n-G005126\n-G005131\n-G005138\n-G005142\n-G005148\n-G005149\n-G005154\n-G005158\n-G005159\n-G005167\n-G005169\n-G005172\n-G005173\n-G005175\n-G005176\n-G005178\n-G005180\n-G005182\n-G005185\n-G005186\n-G005188\n-G005192\n-G005196\n-G005198\n-G005199\n-G005200\n-G005201\n-G005202\n-G005203\n-G005204\n-G005212\n-G005214\n-G005215\n-G005217\n-G005220\n-G005221\n-G005222\n-G005227\n-G005231\n-G005234\n-G005237\n-G005241\n-G005243\n-G005246\n-G005248\n-G005250\n-G005254\n-G005255\n-G005259\n-G005262\n-G005263\n-G005264\n-G005265\n-G005266\n-G005268\n-G005269\n-G005273\n-G005274\n-G005276\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/UQ.txt --- a/test-data/UQ.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1213 +0,0 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|
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/Venn_diagram_html.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Venn_diagram_html.html Fri Feb 16 03:37:16 2018 -0500 |
| [ |
| b'@@ -0,0 +1,228 @@\n+<!DOCTYPE html>\n+<!--\n+# Copyright (C) 2015 INRA\n+#\n+# This program is free software: you can redistribute it and/or modify\n+# it under the terms of the GNU General Public License as published by\n+# the Free Software Foundation, either version 3 of the License, or\n+# (at your option) any later version.\n+#\n+# This program is distributed in the hope that it will be useful,\n+# but WITHOUT ANY WARRANTY; without even the implied warranty of\n+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n+# GNU General Public License for more details.\n+#\n+# You should have received a copy of the GNU General Public License\n+# along with this program. If not, see <http://www.gnu.org/licenses/>.\n+-->\n+<html>\n+\t<head>\n+\t\t<title>Jvenn+</title>\n+\t\t<meta charset="UTF-8">\n+\t\t<meta name="version" content="2.0.1">\n+\t\t<link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>\n+\t\t<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>\n+\t\t<style type="text/css">\n+\t\t\t#js-alert {\n+\t\t\t\twidth: 90%;\n+\t\t\t\tmargin-right: auto;\n+\t\t\t\tmargin-left: auto;\n+\t\t\t}\n+\t\t\t#content {\n+\t\t\t\twidth: 90%;\n+\t\t\t\tmargin-right: auto;\n+\t\t\t\tmargin-left: auto;\n+\t\t\t}\n+\t\t\t.clear {\n+\t\t\t\tclear: both;\n+\t\t\t\theight: 0px;\n+\t\t\t\twidth: 100%;\n+\t\t\t\tfloat: none !important;\n+\t\t\t}\n+\t\t\tul.nav-tabs {\n+\t\t\t\tmargin-bottom: 30px;\n+\t\t\t}\n+\t\t\t#venn-filters {\n+\t\t\t\tpadding: 10px;\n+\t\t\t\tbackground-color: #FFF;\n+\t\t\t\tbackground-clip: padding-box;\n+\t\t\t\tborder: 1px solid rgba(0, 0, 0, 0.15);\n+\t\t\t\tborder-radius: 4px;\n+\t\t\t\tbox-shadow: 0px 6px 12px rgba(0, 0, 0, 0.176);\n+\t\t\t\tmargin-right: auto;\n+\t\t\t\tmargin-left: auto;\n+\t\t\t\tmargin-bottom: 30px;\n+\t\t\t}\n+\t\t\t#byFilters-jvenn {\n+\t\t\t\tmargin-right: auto;\n+\t\t\t\tmargin-left: auto;\n+\t\t\t}\n+\t\t\t#venn-filters ul {\n+\t\t\t\tlist-style-type: none;\n+\t\t\t}\n+\t\t</style>\n+\n+\t\t<script type="text/javascript" src="http://code.jquery.com/jquery-2.1.3.min.js"></script>\n+\t\t<script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts.js"></script>\n+\t\t<script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/exporting.js"></script>\n+\t\t<script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>\n+\t\t<script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>\n+\t\t<script type="text/javascript">\n+\t\t\t/***************************************************************\n+\t\t\t* Copyright notice\n+\t\t\t*\n+\t\t\t* (c) 2014 PF bioinformatique de Toulouse\n+\t\t\t* All rights reserved\n+\t\t\t* \n+\t\t\t*\n+\t\t\t* This script is an adaptation of the venny script developed by\n+\t\t\t* Juan Carlos Oliveros, BioinfoGP, CNB-CSIC:\n+\t\t\t* Oliveros, J.C. (2007) VENNY. An interactive tool for comparing \n+\t\t\t* lists with Venn Diagrams.\n+\t\t\t* http://bioinfogp.cnb.csic.es/tools/venny/index.html.\n+\t\t\t* It is distributed under the terms of the GNU General Public \n+\t\t\t* License as published by the Free Software Foundation; either \n+\t\t\t* version 2 of the License, or (at your option) any later version.\n+\t\t\t*\n+\t\t\t* The GNU General Public License can be found at\n+\t\t\t* http://www.gnu.org/copyleft/gpl.html.\n+\t\t\t*\n+\t\t\t* This script is distributed in the hope that it will be useful,\n+\t\t\t* but WITHOUT ANY WARRANTY; without even the implied warranty of\n+\t\t\t* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n+\t\t\t* GNU General Public License for more details.\n+\t\t\t*\n+\t\t\t* This copyright notice MUST APPEAR in all copies of the script!\n+\t\t\t***************************************************************/\n+\t\t\t!function(){"use strict";function s(s,t){var e,l=Object.keys(t);for(e=0;e<l.length;e++)s=s.replace(new RegExp("\\\\{"+l[e]+"\\\\}","gi"),t[l[e]]);return s}function t(s){var t,e,l;if(!s)throw new Error("cannot create a random attribute name for an undefined object");t="ABCDEFGHIJKLMNOPQRSTUVWXTZabcdefghiklmnopqrstuvwxyz",e="";do for(e="",l=0;12>l;l++)e+=t[Math.floor(Math.random()*t.length)];'..b' "P63167", "P05783", "P50990", "P15880", "P35908", "P07476", "P49862"], "BC": ["Q13835", "P01023", "P59665", "Q15517", "P05109", "P60709", "P62805", "Q5D862", "P07737"], "AC": ["P02787", "P01833", "P01625", "P22528", "Q9UGM3", "Q96DA0", "P02763", "P61916", "P01009", "P12273", "Q13867", "P01765", "P01036", "P01011"], "ABC": ["P02768", "P10599", "P07355", "Q01469", "P68871", "P07900", "P15924", "P25311", "Q86YZ3", "P05089", "Q08188", "P04406", "P07339", "P06396", "P00338", "P61626", "P04083", "Q02413", "P27482", "P01871", "P80188", "P31947", "P31025", "Q96P63", "P63104", "P00738", "P02788"], "AB": ["P08779", "P04259", "O75223", "P47756", "P06733", "P20933", "Q9NZH8", "P09211", "P04792", "P36952", "P01040", "P60174", "P26641", "P14618", "P31944", "Q8N1N4", "P04075", "P14923", "Q8WVV4", "O75369", "P00558", "P19013", "Q5T750", "P14735", "P47929", "Q06830", "P29508", "P68371", "Q9NZT1", "P11142", "P40926", "P01876", "P58107", "P01834", "P18206", "Q04695", "P08865", "P13646", "P02545", "P04040", "P13639", "P05090", "Q6KB66", "P01857", "Q6UWP8", "Q9UIV8", "Q9C075", "O43707", "P11021", "P31949", "P60842"]}, "name": {"A": "Lacombe", "C": "Bredberg", "B": "Mucilli"}}], "displaySwitch": "true", "shortNumber": "true", "displayStat": "true"} ;\n+$(document).ready(function(){\n+ $(\'#example\').jvenn(jvenn_data);\n+});\n+\n+\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n+\t\t\t//\n+\t\t\t// Data\n+\t\t\t//\n+\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n+\t\t\t//var processed_filters = ###PORCESSED_FILTERS### ;\n+\t\t\t/* Example:\n+\t\t\t\t[\'filterA\', \'filterB\', \'filterC\']\n+\t\t\t*/\n+\t\t\t//var global_results = ###GLOBAL_RESULTS### ; \n+\t\t\t/* Example: \n+\t\t\t\t{\n+\t\t\t\t\t\'nb_clstr_kept\': 100,\n+\t\t\t\t\t\'nb_clstr_ini\': 300,\n+\t\t\t\t\t\'nb_seq_kept\': 100,\n+\t\t\t\t\t\'nb_seq_ini\': 100000\n+\t\t\t\t}\n+\t\t\t*/\n+\t\t\t//var by_samples_results =\xc2\xa0###SAMPLES_RESULTS### ;\n+\t\t\t/* Example:\n+\t\t\t\t{\n+\t\t\t\t\t\'sampleA\':{\n+\t\t\t\t\t\t\'filtered\':{\n+\t\t\t\t\t\t\t\'filterA\': 10,\n+\t\t\t\t\t\t\t\'filterB\': 20\n+\t\t\t\t\t\t},\n+\t\t\t\t\t\t\'initial\': 75,\n+\t\t\t\t\t\t\'kept\': 50\n+\t\t\t\t\t},\n+\t\t\t\t\t\'sampleB\':{\n+\t\t\t\t\t\t\'filtered\':{\n+\t\t\t\t\t\t\t\'filterB\': 20,\n+\t\t\t\t\t\t},\n+\t\t\t\t\t\t\'initial\': 110,\n+\t\t\t\t\t\t\'kept\': 90\n+\t\t\t\t\t}\n+\t\t\t\t}\n+\t\t\t*/\n+\t\t\t//var by_filters_results =\xc2\xa0###FILTERS_RESULTS### ;\n+\t\t\t/* Example:\n+\t\t\t\t[\n+\t\t\t\t\t{\'filters\':[\'filterA\'], \'count\': 10},\n+\t\t\t\t\t{\'filters\':[\'filterB\'], \'count\': 20},\n+\t\t\t\t\t{\'filters\':[\'filterC\'], \'count\': 30},\n+\t\t\t\t\t{\'filters\':[\'filterA\', \'filterB\'], \'count\': 1},\n+\t\t\t\t\t{\'filters\':[\'filterA\', \'filterC\'], \'count\': 2},\n+\t\t\t\t\t{\'filters\':[\'filterB\', \'filterC\'], \'count\': 3},\n+\t\t\t\t\t{\'filters\':[\'filterA\', \'filterB\', \'filterC\'], \'count\': 4}\n+\t\t\t\t];\n+\t\t\t*/\n+\t\t\t\n+\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n+\t\t\t//\n+\t\t\t// Main\n+\t\t\t//\n+\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n+\t\t\t$(function() {\n+\t\t\t\t// Remove alert\n+\t\t\t\t$(\'#js-alert\').remove();\n+\t\t\t\t$(\'#content\').removeClass("hidden");\n+\t\t\t\t\n+\t\t\t\t// Load active tab\n+\t\t\t\tglobal_filters_load();\n+\t\t\t\tintersections_filters_load();\n+\t\t\t\t\n+\t\t\t\t// Add tab listener\n+\t\t\t\t$(\'.nav-tabs a\').click(function (e) {\n+\t\t\t\t\te.preventDefault();\n+\t\t\t\t\t$(this).tab(\'show\');\n+\t\t\t\t\tif( $(this).attr(\'href\') == "#view-by-samples" && $(\'#view-by-samples\').hasClass(\'disabled\') ){\n+\t\t\t\t\t\t$(\'#view-by-samples\').removeClass(\'disabled\')\n+\t\t\t\t\t\tsamples_filters_load( "filter-log" );\n+\t\t\t\t\t}\n+\t\t\t\t})\n+\t\t\t});\n+\t\t</script>\n+\n+\t</head>\n+\t<body>\n+\t\t<!-- Alert -->\n+\t\t<p id="js-alert" class="alert alert-warning">\n+ javascript is needed to display data.<br />\n+ If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.\n+\t\t</p>\n+\t\t\n+ <!-- Content -->\n+\t<div id="example"></div>\n+ </div>\n+\n+\t\t\n+\t</body>\n+</html>\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/Venn_text_output.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Venn_text_output.txt Fri Feb 16 03:37:16 2018 -0500 |
| b |
| @@ -0,0 +1,81 @@ +Lacombe Bredberg Mucilli Mucilli_Bredberg Lacombe_Bredberg Lacombe_Mucilli_Bredberg Lacombe_Mucilli +P0DMV9 P04217 Q7Z794 Q13835 P02787 P02768 P08779 +Q9Y6R7 P02649 P51149 P01023 P01833 P10599 P04259 +P30740 Q7Z351 P17900 P59665 P01625 P07355 O75223 +P68363 P08758 Q96KK5 Q15517 P22528 Q01469 P47756 +O75635 Q9UBC9 P10809 P05109 Q9UGM3 P68871 P06733 +O60911 P02760 O43175 P60709 Q96DA0 P07900 P20933 +P61160 O95436 Q6ZVX7 P62805 P02763 P15924 Q9NZH8 +Q15828 P02647 P01861 Q5D862 P61916 P25311 P09211 +P23284 P15814 P14174 P07737 P01009 Q86YZ3 P04792 +P20930 Q9NSK0 P01593 P12273 P05089 P36952 +P01860 P01717 Q15365 Q13867 Q08188 P01040 +Q96FX8 P04117 P37802 P01765 P04406 P60174 +P62937 Q13885 P29373 P01036 P07339 P26641 +Q15149 P01591 P30050 P01011 P06396 P14618 +P25705 O95613 Q6E0U4 P00338 P31944 +P19971 P01880 P23526 P61626 Q8N1N4 +O75342 P04233 Q13748 P04083 P04075 +Q92820 P01598 P05120 Q02413 P14923 +P25788 P01621 Q14134 P27482 Q8WVV4 +Q9HCY8 Q9UL77 P68431 P01871 O75369 +P19012 P05362 P35527 P80188 P00558 +Q8TAX7 P01024 Q5XKE5 P31947 P19013 +P42357 Q86SJ6 O15523 P31025 Q5T750 +P50395 P12429 P25787 Q96P63 P14735 +P01766 P43652 P22392 P63104 P47929 +P40121 P22897 P49189 P00738 Q06830 +P04080 P06313 P61978 P02788 P29508 +Q9HC84 B4E1Z4 P32119 P68371 +P59998 P01008 Q5VVQ6 Q9NZT1 +P23396 A2IPI6 Q8IW75 P11142 +P00491 P02790 P01620 P40926 +P62258 P61769 P02671 P01876 +P01623 P00450 P62244 P58107 +P31151 Q08380 P0CG48 P01834 +Q6P4A8 P02751 P02675 P18206 +P63261 Q8NF17 Q9Y277 Q04695 +P01877 Q14624 P02679 P08865 +P09228 P0C0L5 P02533 P13646 +P48637 P0C0L4 Q9Y337 P02545 +P07858 Q9UL83 P12035 P04040 +P07384 P08238 P52907 P13639 +P06870 P02766 P35321 P05090 +Q9UI42 Q9UL86 P13489 Q6KB66 +P35579 P02774 P29401 P01857 +P13473 P05155 P04264 Q6UWP8 +P62987 P11686 Q14210 Q9UIV8 +P04745 P01622 P28074 Q9C075 +P49720 Q6N093 P40925 O43707 +P11279 P04637 P28070 P11021 +P18510 Q96S96 P28072 P31949 +Q14574 P62807 Q14CN4 P60842 +P02538 P23528 Q9Y3R4 +P48594 P10909 P13647 +A8K2U0 A4F255 P54652 +P09972 P00734 Q08554 +O95274 P19827 P08107 +P01037 Q16378 P30041 +P0CG05 P01714 P06702 +P00441 P11217 O43790 + A0A0U1RVJ5 Q96QA5 + P01617 P23490 + P01611 P22735 + P04196 P13645 + P01613 P17931 + P02747 Q3ZCW2 + P80748 P68104 + A0N5G5 P06576 + Q8IWL2 Q5T749 + Q9BYE4 P05091 + P06681 O60814 + Q6MZX7 P37837 + P22531 + P03973 + P63167 + P05783 + P50990 + P15880 + P35908 + P07476 + P49862 \ No newline at end of file |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/venn_diagram_summary.html --- a/test-data/venn_diagram_summary.html Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| b'@@ -1,228 +0,0 @@\n-<!DOCTYPE html>\n-<!--\n-# Copyright (C) 2015 INRA\n-#\n-# This program is free software: you can redistribute it and/or modify\n-# it under the terms of the GNU General Public License as published by\n-# the Free Software Foundation, either version 3 of the License, or\n-# (at your option) any later version.\n-#\n-# This program is distributed in the hope that it will be useful,\n-# but WITHOUT ANY WARRANTY; without even the implied warranty of\n-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n-# GNU General Public License for more details.\n-#\n-# You should have received a copy of the GNU General Public License\n-# along with this program. If not, see <http://www.gnu.org/licenses/>.\n--->\n-<html>\n-\t<head>\n-\t\t<title>Jvenn+</title>\n-\t\t<meta charset="UTF-8">\n-\t\t<meta name="version" content="2.0.1">\n-\t\t<link rel="stylesheet" href="https://cdn.datatables.net/1.10.6/css/jquery.dataTables.css"></link>\n-\t\t<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/css/bootstrap.min.css"></link>\n-\t\t<style type="text/css">\n-\t\t\t#js-alert {\n-\t\t\t\twidth: 90%;\n-\t\t\t\tmargin-right: auto;\n-\t\t\t\tmargin-left: auto;\n-\t\t\t}\n-\t\t\t#content {\n-\t\t\t\twidth: 90%;\n-\t\t\t\tmargin-right: auto;\n-\t\t\t\tmargin-left: auto;\n-\t\t\t}\n-\t\t\t.clear {\n-\t\t\t\tclear: both;\n-\t\t\t\theight: 0px;\n-\t\t\t\twidth: 100%;\n-\t\t\t\tfloat: none !important;\n-\t\t\t}\n-\t\t\tul.nav-tabs {\n-\t\t\t\tmargin-bottom: 30px;\n-\t\t\t}\n-\t\t\t#venn-filters {\n-\t\t\t\tpadding: 10px;\n-\t\t\t\tbackground-color: #FFF;\n-\t\t\t\tbackground-clip: padding-box;\n-\t\t\t\tborder: 1px solid rgba(0, 0, 0, 0.15);\n-\t\t\t\tborder-radius: 4px;\n-\t\t\t\tbox-shadow: 0px 6px 12px rgba(0, 0, 0, 0.176);\n-\t\t\t\tmargin-right: auto;\n-\t\t\t\tmargin-left: auto;\n-\t\t\t\tmargin-bottom: 30px;\n-\t\t\t}\n-\t\t\t#byFilters-jvenn {\n-\t\t\t\tmargin-right: auto;\n-\t\t\t\tmargin-left: auto;\n-\t\t\t}\n-\t\t\t#venn-filters ul {\n-\t\t\t\tlist-style-type: none;\n-\t\t\t}\n-\t\t</style>\n-\n-\t\t<script type="text/javascript" src="http://code.jquery.com/jquery-2.1.3.min.js"></script>\n-\t\t<script type="text/javascript" src="http://code.highcharts.com/4.1.4/highcharts.js"></script>\n-\t\t<script type="text/javascript" src="http://code.highcharts.com/4.1.4/modules/exporting.js"></script>\n-\t\t<script type="text/javascript" src="https://cdn.datatables.net/1.10.6/js/jquery.dataTables.min.js"></script>\n-\t\t<script type="text/javascript" src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>\n-\t\t<script type="text/javascript">\n-\t\t\t/***************************************************************\n-\t\t\t* Copyright notice\n-\t\t\t*\n-\t\t\t* (c) 2014 PF bioinformatique de Toulouse\n-\t\t\t* All rights reserved\n-\t\t\t* \n-\t\t\t*\n-\t\t\t* This script is an adaptation of the venny script developed by\n-\t\t\t* Juan Carlos Oliveros, BioinfoGP, CNB-CSIC:\n-\t\t\t* Oliveros, J.C. (2007) VENNY. An interactive tool for comparing \n-\t\t\t* lists with Venn Diagrams.\n-\t\t\t* http://bioinfogp.cnb.csic.es/tools/venny/index.html.\n-\t\t\t* It is distributed under the terms of the GNU General Public \n-\t\t\t* License as published by the Free Software Foundation; either \n-\t\t\t* version 2 of the License, or (at your option) any later version.\n-\t\t\t*\n-\t\t\t* The GNU General Public License can be found at\n-\t\t\t* http://www.gnu.org/copyleft/gpl.html.\n-\t\t\t*\n-\t\t\t* This script is distributed in the hope that it will be useful,\n-\t\t\t* but WITHOUT ANY WARRANTY; without even the implied warranty of\n-\t\t\t* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n-\t\t\t* GNU General Public License for more details.\n-\t\t\t*\n-\t\t\t* This copyright notice MUST APPEAR in all copies of the script!\n-\t\t\t***************************************************************/\n-\t\t\t!function(){"use strict";function s(s,t){var e,l=Object.keys(t);for(e=0;e<l.length;e++)s=s.replace(new RegExp("\\\\{"+l[e]+"\\\\}","gi"),t[l[e]]);return s}function t(s){var t,e,l;if(!s)throw new Error("cannot create a random attribute name for an undefined object");t="ABCDEFGHIJKLMNOPQRSTUVWXTZabcdefghiklmnopqrstuvwxyz",e="";do for(e="",l=0;12>l;l++)e+=t[Math.floor(Math.random()*t.length)];'..b'"G005154", "G004095", "G001107", "G001105", "G002894", "G001319", "G002896", "G002488", "G001317", "G002953", "G003902", "G003579", "G002551", "G004895", "G002001", "G001951", "G001819", "G002797", "G001771", "G001772", "G001554", "G000705", "G000704", "G000701", "G000951", "G001650", "G001651", "G002077", "G003075", "G001006", "G000259", "G004187", "G004565", "G004131", "G004136", "G003208", "G003611", "G005119", "G004762", "G005269", "G005268", "G004768", "G005264", "G005263", "G004299", "G002097", "G000311", "G000316", "G004612", "G005212", "G004349", "G004618", "G001136", "G000101", "G001045", "G001043", "G000005", "G003539", "G003220", "G002755", "G002453", "G005105", "G000030", "G002282"], "ABCDF": [], "BCEF": [], "CDE": [], "CDF": [], "CDEF": ["G004293", "G005246"], "ABE": ["G002821", "G004455", "G003971", "G000024", "G004855"], "ABCD": [], "ABCEF": ["G004239", "G003173", "G004545", "G004051", "G002566", "G002518", "G001525", "G000722", "G001029", "G004391", "G000370", "G003082", "G003602", "G002180", "G005167", "G004789", "G000824", "G005259"], "BDE": [], "ACDE": []}, "name": {"A": "DESeq", "C": "RPKM", "B": "FQ", "E": "TMM", "D": "TC", "F": "UQ"}}], "displaySwitch": "true", "shortNumber": "true", "displayStat": "true"} ;\n-$(document).ready(function(){\n- $(\'#example\').jvenn(jvenn_data);\n-});\n-\n-\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n-\t\t\t//\n-\t\t\t// Data\n-\t\t\t//\n-\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n-\t\t\t//var processed_filters = ###PORCESSED_FILTERS### ;\n-\t\t\t/* Example:\n-\t\t\t\t[\'filterA\', \'filterB\', \'filterC\']\n-\t\t\t*/\n-\t\t\t//var global_results = ###GLOBAL_RESULTS### ; \n-\t\t\t/* Example: \n-\t\t\t\t{\n-\t\t\t\t\t\'nb_clstr_kept\': 100,\n-\t\t\t\t\t\'nb_clstr_ini\': 300,\n-\t\t\t\t\t\'nb_seq_kept\': 100,\n-\t\t\t\t\t\'nb_seq_ini\': 100000\n-\t\t\t\t}\n-\t\t\t*/\n-\t\t\t//var by_samples_results =\xc2\xa0###SAMPLES_RESULTS### ;\n-\t\t\t/* Example:\n-\t\t\t\t{\n-\t\t\t\t\t\'sampleA\':{\n-\t\t\t\t\t\t\'filtered\':{\n-\t\t\t\t\t\t\t\'filterA\': 10,\n-\t\t\t\t\t\t\t\'filterB\': 20\n-\t\t\t\t\t\t},\n-\t\t\t\t\t\t\'initial\': 75,\n-\t\t\t\t\t\t\'kept\': 50\n-\t\t\t\t\t},\n-\t\t\t\t\t\'sampleB\':{\n-\t\t\t\t\t\t\'filtered\':{\n-\t\t\t\t\t\t\t\'filterB\': 20,\n-\t\t\t\t\t\t},\n-\t\t\t\t\t\t\'initial\': 110,\n-\t\t\t\t\t\t\'kept\': 90\n-\t\t\t\t\t}\n-\t\t\t\t}\n-\t\t\t*/\n-\t\t\t//var by_filters_results =\xc2\xa0###FILTERS_RESULTS### ;\n-\t\t\t/* Example:\n-\t\t\t\t[\n-\t\t\t\t\t{\'filters\':[\'filterA\'], \'count\': 10},\n-\t\t\t\t\t{\'filters\':[\'filterB\'], \'count\': 20},\n-\t\t\t\t\t{\'filters\':[\'filterC\'], \'count\': 30},\n-\t\t\t\t\t{\'filters\':[\'filterA\', \'filterB\'], \'count\': 1},\n-\t\t\t\t\t{\'filters\':[\'filterA\', \'filterC\'], \'count\': 2},\n-\t\t\t\t\t{\'filters\':[\'filterB\', \'filterC\'], \'count\': 3},\n-\t\t\t\t\t{\'filters\':[\'filterA\', \'filterB\', \'filterC\'], \'count\': 4}\n-\t\t\t\t];\n-\t\t\t*/\n-\t\t\t\n-\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n-\t\t\t//\n-\t\t\t// Main\n-\t\t\t//\n-\t\t\t///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////\n-\t\t\t$(function() {\n-\t\t\t\t// Remove alert\n-\t\t\t\t$(\'#js-alert\').remove();\n-\t\t\t\t$(\'#content\').removeClass("hidden");\n-\t\t\t\t\n-\t\t\t\t// Load active tab\n-\t\t\t\tglobal_filters_load();\n-\t\t\t\tintersections_filters_load();\n-\t\t\t\t\n-\t\t\t\t// Add tab listener\n-\t\t\t\t$(\'.nav-tabs a\').click(function (e) {\n-\t\t\t\t\te.preventDefault();\n-\t\t\t\t\t$(this).tab(\'show\');\n-\t\t\t\t\tif( $(this).attr(\'href\') == "#view-by-samples" && $(\'#view-by-samples\').hasClass(\'disabled\') ){\n-\t\t\t\t\t\t$(\'#view-by-samples\').removeClass(\'disabled\')\n-\t\t\t\t\t\tsamples_filters_load( "filter-log" );\n-\t\t\t\t\t}\n-\t\t\t\t})\n-\t\t\t});\n-\t\t</script>\n-\n-\t</head>\n-\t<body>\n-\t\t<!-- Alert -->\n-\t\t<p id="js-alert" class="alert alert-warning">\n- javascript is needed to display data.<br />\n- If you try to view this data on galaxy please contact your administrator to authorise javascript or download the file to view.\n-\t\t</p>\n-\t\t\n- <!-- Content -->\n-\t<div id="example"></div>\n- </div>\n-\n-\t\t\n-\t</body>\n-</html>\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca test-data/venn_diagram_text_output.txt --- a/test-data/venn_diagram_text_output.txt Sun Nov 26 19:09:40 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,485 +0,0 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002885\t\t\t\n-\t\t\tG002245\t\tG002712\t\t\t\tG000605\tG002752\t\t\t\t\t\t\t\t\tG000'..b'\t\t\n-\t\t\tG003025\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004131\t\t\t\n-\t\t\tG003342\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004136\t\t\t\n-\t\t\tG002687\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG003208\t\t\t\n-\t\t\tG001289\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG003611\t\t\t\n-\t\t\tG001324\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005119\t\t\t\n-\t\t\tG001325\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004762\t\t\t\n-\t\t\tG001281\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005269\t\t\t\n-\t\t\tG003938\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005268\t\t\t\n-\t\t\tG004022\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004768\t\t\t\n-\t\t\tG003931\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005264\t\t\t\n-\t\t\tG003163\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005263\t\t\t\n-\t\t\tG001517\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004299\t\t\t\n-\t\t\tG001457\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG002097\t\t\t\n-\t\t\tG002051\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG000311\t\t\t\n-\t\t\tG003233\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG000316\t\t\t\n-\t\t\tG003791\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004612\t\t\t\n-\t\t\tG003238\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005212\t\t\t\n-\t\t\tG003480\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004349\t\t\t\n-\t\t\tG003337\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG004618\t\t\t\n-\t\t\tG004470\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG001136\t\t\t\n-\t\t\tG004610\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG000101\t\t\t\n-\t\t\tG000358\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG001045\t\t\t\n-\t\t\tG003800\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG001043\t\t\t\n-\t\t\tG004657\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG000005\t\t\t\n-\t\t\tG004874\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG003539\t\t\t\n-\t\t\tG003808\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG003220\t\t\t\n-\t\t\tG000352\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG002755\t\t\t\n-\t\t\tG004625\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG002453\t\t\t\n-\t\t\tG002228\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG005105\t\t\t\n-\t\t\tG001711\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG000030\t\t\t\n-\t\t\tG004784\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tG002282\t\t\t\n-\t\t\tG004377\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004007\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001179\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000078\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000660\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004392\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002096\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004398\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002093\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG005227\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002705\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002251\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001108\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000592\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001756\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000772\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001825\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002891\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002439\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002489\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002484\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002957\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003474\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002388\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001083\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001080\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002555\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001394\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002843\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001952\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001073\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001810\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001812\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001776\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002414\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002417\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001227\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001495\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001559\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000468\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000810\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000709\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002671\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003375\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004435\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003076\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003296\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000253\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004220\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000254\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001424\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003949\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002458\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000929\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000927\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001578\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004137\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004501\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003612\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004245\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003201\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003972\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004989\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004988\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004755\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004040\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000405\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG005265\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004044\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004980\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004829\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002213\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004290\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003850\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004346\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000317\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001049\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003701\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG003538\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000530\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000534\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG004535\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002757\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002459\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001910\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002751\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002758\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG002320\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG000031\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n-\t\t\tG001032\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n\\ No newline at end of file\n' |
| b |
| diff -r 9d4f20618ab4 -r 760470ddb9ca venn_diagram.xml --- a/venn_diagram.xml Sun Nov 26 19:09:40 2017 -0500 +++ b/venn_diagram.xml Fri Feb 16 03:37:16 2018 -0500 |
| b |
| @@ -22,7 +22,6 @@ <param type="select" name="input" label="Please provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" > <option value="list">Copy/paste your identifiers </option> <option value="file">Input file containing your identifiers</option> - </param> <when value="file"> <param type="data" name="file" format="txt,tabular" label="Choose a file that contains your list of IDs" /> @@ -54,61 +53,33 @@ <test> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="DESeq.txt" /> - <param name="header" value="false" /> + <param name="input" value="file" /> + <param name="file" value="ID_Converter_FKW_Lacombe_et_al_2017_OK.txt" /> + <param name="header" value="true" /> <param name="ncol" value="c1" /> - <param name="name" value="DESeq" /> - </conditional> - </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="FQ.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="FQ" /> - </conditional> - </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="RPKM.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="RPKM" /> + <param name="name" value="Lacombe" /> </conditional> </repeat> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="TC.txt" /> + <param name="input" value="file" /> + <param name="file" value="Mucilli.txt" /> <param name="header" value="false" /> <param name="ncol" value="c1" /> - <param name="name" value="TC" /> + <param name="name" value="Mucilli" /> </conditional> </repeat> <repeat name="series"> <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="TMM.txt" /> + <param name="input" value="file" /> + <param name="file" value="Bredberg.txt" /> <param name="header" value="false" /> <param name="ncol" value="c1" /> - <param name="name" value="TMM" /> + <param name="name" value="Bredberg" /> </conditional> </repeat> - <repeat name="series"> - <conditional name="se"> - <param name="input" value="mq_file" /> - <param name="mq_file" value="UQ.txt" /> - <param name="header" value="false" /> - <param name="ncol" value="c1" /> - <param name="name" value="UQ" /> - </conditional> - </repeat> - <output name="output_summary" file="venn_diagram_summary.html" /> - <output name="output_text" file="venn_diagram_text_output.txt" /> - + <output name="output_summary" file="Venn_diagram_html.html" /> + <output name="output_text" file="Venn_text_output.txt" /> </test> </tests> <help> @@ -120,21 +91,22 @@ * **Query file:** A file containing different information of proteins, could be output of previous components. * **File of a list of IDs:** .TXT format, each line contains 1 ID - - AMY1A - - ALB - - IGKC - - CSTA - - IGHA1 - - ACTG1 + + AMY1A + + ALB + + IGKC + + CSTA + + IGHA1 + + ACTG1 * **List of IDs:** IDs separated by a space - AMY1A ALB IGKC CSTA IGHA1 ACTG1 + + AMY1A ALB IGKC CSTA IGHA1 ACTG1 If you choose a file, it is necessary to specify the column where you would like to perform the comparison. |